FvH4_1g11370

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
N/A
Physical Location & Seq
Forward (+)
6202637 .. 6204171
1535 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11370.t1

Sequence Viewer

Length: 447 bp
ATGAGGAGATTCAAAATAAACATGCCGATGAGACGAAAAACAAGAGAAAACGAGCTTGCCGCTAGTGAAGAGAATAGGAAGAAGAGACTTCCAGAAATAACATCGTGGGCATATGAGAATGGCCTCCCTGAGGAACTGAAGAAGAAGATCATGGACAATTTGACAGACAACTTGAGAGCAGATCTAGAAGTCAACACCAAGAATCTTCACTCTATACTTCGTTTGGAAGATATAAGAGAAGTTAAGTACCATCTCTGCTTGCCTATTCTAAGGAAGGTTTCCGTGTTTAGTGATTGGGAGGAAGAATTGTTGAAACAACTCTGTGAAAGGCTTTCACCTGTTATCTATCCTGAGGGCTTCCATGTATTACGAGAGGGGGAACCAACTGATAAGACGTACTGTCTTCATCACGAAAGGCCAGATATGTACCTACACAAGAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

149

Amino Acids

17.83

Weight (kDa)

7.75

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 3 cut(s) 248, 398, 428
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 2 cut(s) 13, 313
AhdI GACNNNNNGTC 1 cut(s) 399
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw26I GTCTC 2 cut(s) 25, 79
AoxI GGCC 2 cut(s) 121, 416
AsuHPI GGTGA 1 cut(s) 327
AxyI CCTNAGG 2 cut(s) 129, 351
BbsI GAAGAC 1 cut(s) 395
BccI CCATC 1 cut(s) 258
BcoDI GTCTC 2 cut(s) 25, 79
BfaI CTAG 2 cut(s) 63, 185
BglII AGATCT 1 cut(s) 181
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BmeRI GACNNNNNGTC 1 cut(s) 399
BmiI GGNNCC 1 cut(s) 381
BpiI GAAGAC 1 cut(s) 395
BpuEI CTTGAG 1 cut(s) 193
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse21I CCTNAGG 2 cut(s) 129, 351
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMII CTCAG 2 cut(s) 120, 342
BseRI GAGGAG 1 cut(s) 19
BshFI GGCC 2 cut(s) 123, 418
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 2 cut(s) 25, 79
BsmBI CGTCTC 1 cut(s) 25
BsnI GGCC 2 cut(s) 123, 418
Bsp143I GATC 2 cut(s) 147, 181
BspACI CCGC 1 cut(s) 60
BspANI GGCC 2 cut(s) 123, 418
BspCNI CTCAG 2 cut(s) 121, 343
BspLI GGNNCC 1 cut(s) 381
BssMI GATC 2 cut(s) 147, 181
Bst4CI ACNGT 1 cut(s) 401
Bst6I CTCTTC 2 cut(s) 63, 77
BstC8I GCNNGC 2 cut(s) 57, 260
BstDEI CTNAG 3 cut(s) 129, 269, 351
BstENI CCTNNNNNAGG 1 cut(s) 128
BstKTI GATC 2 cut(s) 150, 184
BstMAI GTCTC 2 cut(s) 25, 79
BstMBI GATC 2 cut(s) 147, 181
BstNSI RCATGY 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 395
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
Bsu36I CCTNAGG 2 cut(s) 129, 351
BsuRI GGCC 2 cut(s) 123, 418
Cac8I GCNNGC 2 cut(s) 57, 260
Csp6I GTAC 3 cut(s) 247, 397, 427
CviAII CATG 3 cut(s) 22, 151, 362
CviJI RGCY 5 cut(s) 55, 123, 331, 357, 418
CviKI_1 RGCY 5 cut(s) 55, 123, 331, 357, 418
CviQI GTAC 3 cut(s) 247, 397, 427
DdeI CTNAG 3 cut(s) 129, 269, 351
DpnI GATC 2 cut(s) 149, 183
DpnII GATC 2 cut(s) 147, 181
DriI GACNNNNNGTC 1 cut(s) 399
Eam1104I CTCTTC 2 cut(s) 63, 77
Eam1105I GACNNNNNGTC 1 cut(s) 399
EarI CTCTTC 2 cut(s) 63, 77
Eco57I CTGAAG 1 cut(s) 158
Eco81I CCTNAGG 2 cut(s) 129, 351
EcoNI CCTNNNNNAGG 1 cut(s) 128
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 3 cut(s) 25, 154, 365
FaiI YATR 8 cut(s) 23, 112, 114, 152, 215, 233, 363, 425
FatI CATG 3 cut(s) 21, 150, 361
FauNDI CATATG 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 2 cut(s) 63, 185
GluI GCNGC 1 cut(s) 60
HaeIII GGCC 2 cut(s) 123, 418
Hin1II CATG 3 cut(s) 25, 154, 365
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 2 cut(s) 9, 202
HphI GGTGA 1 cut(s) 327
Hpy166II GTNNAC 1 cut(s) 193
Hpy188III TCNNGA 4 cut(s) 92, 185, 350, 410
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4IV ACGT 1 cut(s) 395
HpyF3I CTNAG 3 cut(s) 129, 269, 351
HpySE526I ACGT 1 cut(s) 395
Hsp92II CATG 3 cut(s) 25, 154, 365
Kzo9I GATC 2 cut(s) 147, 181
LpnPI CCDG 5 cut(s) 105, 141, 351, 363, 432
MaeI CTAG 2 cut(s) 63, 185
MaeII ACGT 1 cut(s) 395
MalI GATC 2 cut(s) 149, 183
MboI GATC 2 cut(s) 147, 181
MflI RGATCY 1 cut(s) 181
MluCI AATT 2 cut(s) 157, 305
MnlI CCTC 5 cut(s) 124, 134, 292, 346, 367
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 26
NdeI CATATG 1 cut(s) 112
NdeII GATC 2 cut(s) 147, 181
NlaIII CATG 3 cut(s) 25, 154, 365
NlaIV GGNNCC 1 cut(s) 381
NspI RCATGY 1 cut(s) 25
PfeI GAWTC 2 cut(s) 9, 202
PkrI GCNGC 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 381
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 3 cut(s) 248, 398, 428
RsaNI GTAC 3 cut(s) 247, 397, 427
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 2 cut(s) 147, 181
SetI ASST 5 cut(s) 57, 279, 340, 398, 432
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 2 cut(s) 157, 305
SsiI CCGC 1 cut(s) 60
SspMI CTAG 2 cut(s) 63, 185
TaaI ACNGT 1 cut(s) 401
TaiI ACGT 1 cut(s) 398
TasI AATT 2 cut(s) 157, 305
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 2 cut(s) 9, 202
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TspDTI ATGAA 1 cut(s) 395
TspGWI ACGGA 1 cut(s) 271
XagI CCTNNNNNAGG 1 cut(s) 128
XbaI TCTAGA 1 cut(s) 184
XceI RCATGY 1 cut(s) 25
XspI CTAG 2 cut(s) 63, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.