Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

8702970 .. 8710404

Gene Structure 7435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g15360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGAAGAATGAAGGTGAAAGAAAACAGCTTGTATTGATAGTAGAGAGCAGAGTTTCAAAAGCAAGCAGAAGCGCAGGAAGAGGTCGAAGTTTGGAGATATCCAACTTAAGGGTTTACAGTTTCACTGAATTGAGGGATGCTACTCATAGTTTCAGGCAAGGTGAGTTTGGTTGTGGAGGCTTTGGGAGTATGTACAAGGGTTGGATGGATGAGAAGACGCTTGCACCTTCTAAGGTTGGCACGGGAATGGCTGTTGCTGTCAAGAGATTTTACTCGGACAGTATCAGAAGCATTAAACAGTGGCAGCTGGAGCTTAACTTATTAGGAAGGGTTTCTCATCCGAACCTTGTCAAGCTATTGGGATACTGTTGTGAGAAAAAGGAGATGTTCTTAGTTTATGAGTTCATTCCGAATAGAAGCTTACAAAACCATCTTTTTAAAAGAATCCCTACCAAGGAACCACTATCTTGGGACAACAGATTTAAAATAGCTATTGGAGTTGCTCAGGCAATAACTTTCTTGCACAGTTTACAACTCATACACAGAGCTGTCAACCCCTCAAATATATTGCTTGATGAGGATTACAATACAAAGTTATCAGATTTTTCCTTGACAGAATGGGGGTCAGATGATGGTGAGTTAGATGTGTCTACAGGGGGTCAGAGACAACTGATTTTAGCCGCCGTAAGGAGCAAATCAAACTTGTTGACTGGGCTACACCCATTTCTCTGTGATGAAATGAAGTTGCAAAGCATCATGGATGAGCAGGTTAAGGGCCAATATTCCTCCCAGGAAGCATTACAGACTGCACAGCTTACTGTCAACTTGACCTTTCTTCGGCATCCGATGCACCGGTTGACCACGCTCCTCATCGACGACTCCTCCAATCTCGTGCTCTCCACCGACGTGGCCGTTTTACGGATGGTTTCGATGGTTGTTGACGTAGAAAGAGTGGACCTGGCGTTGAGGTCAAGGAAGAAAAAATCGATATTTTCGGTGAATTTTTCATCTGAAACTCTCGATATTTCGAGATCTCGCCGAAACTTTCAAATGTCCCCACTTTCCCGCCGAAATTTGACTCCTCCATGTACTTCGACCACGGCCGCCATGTTTGACTCCTCCACGTACTTTGACCACAACCAGACTTTGACCACGCAAAATGTGTTAAATTTTGCTGCCAAGGTGAATCGAACCTTGGATGGGTTGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

404

Amino Acids

45.54

Weight (kDa)

9.35

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	55 - 218	5e-28	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	57 - 209	2.1e-22	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	757
AccI	GTMKAC	1 cut(s)	650
AciI	CCGC	3 cut(s)	681, 1066, 1104
AcoI	YGGCCR	2 cut(s)	909, 1101
AcsI	RAATTY	3 cut(s)	1000, 1072, 1168
AfaI	GTAC	3 cut(s)	194, 1090, 1127
AfiI	CCNNNNNNNGG	6 cut(s)	108, 454, 687, 837, 918, 1200
AflII	CTTAAG	1 cut(s)	106
AgeI	ACCGGT	1 cut(s)	852
AgsI	TTSAA	2 cut(s)	57, 1049
AjiI	CACGTC	1 cut(s)	907
AjnI	CCWGG	2 cut(s)	789, 957
AjuI	GAANNNNNNNTTGG	2 cut(s)	1178, 1210
AleI	CACNNNNGTG	1 cut(s)	905
AluBI	AGCT	8 cut(s)	28, 307, 313, 355, 420, 491, 548, 814
AluI	AGCT	8 cut(s)	28, 307, 313, 355, 420, 491, 548, 814
Alw21I	GWGCWC	1 cut(s)	897
Alw26I	GTCTC	1 cut(s)	658
AoxI	GGCC	3 cut(s)	775, 909, 1101
ApeKI	GCWGC	2 cut(s)	304, 1175
ApoI	RAATTY	3 cut(s)	1000, 1072, 1168
AsiGI	ACCGGT	1 cut(s)	852
Asp700I	GAANNNNTTC	1 cut(s)	331
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	775, 955
AsuHPI	GGTGA	5 cut(s)	26, 173, 647, 1009, 1195
AvaII	GGWCC	1 cut(s)	955
BaeI	ACNNNNGTAYC	2 cut(s)	355, 388
BauI	CACGAG	1 cut(s)	890
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	897
BbvI	GCAGC	2 cut(s)	316, 1162
BccI	CCATC	6 cut(s)	199, 438, 626, 916, 925, 1193
BceAI	ACGGC	3 cut(s)	668, 896, 1116
BciT130I	CCWGG	2 cut(s)	791, 959
BciVI	GTATCC	1 cut(s)	356
BcoDI	GTCTC	1 cut(s)	658
BfmI	CTRYAG	1 cut(s)	651
BfrI	CTTAAG	1 cut(s)	106
BfuAI	ACCTGC	1 cut(s)	757
BfuI	GTATCC	1 cut(s)	356
BglII	AGATCT	1 cut(s)	1031
BisI	GCNGC	4 cut(s)	305, 681, 1104, 1176
BlsI	GCNGC	4 cut(s)	306, 682, 1105, 1177
Bme1390I	CCNGG	2 cut(s)	791, 959
Bme18I	GGWCC	1 cut(s)	955
BmgBI	CACGTC	1 cut(s)	907
BmgT120I	GGNCC	2 cut(s)	775, 955
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	2 cut(s)	791, 959
BmrI	ACTGGG	1 cut(s)	720
BmsI	GCATC	4 cut(s)	127, 762, 837, 850
BmuI	ACTGGG	1 cut(s)	720
BpiI	GAAGAC	1 cut(s)	221
BpmI	CTGGAG	1 cut(s)	329
Bpu10I	CCTNAGC	1 cut(s)	504
Bsa29I	ATCGAT	1 cut(s)	986
BsaAI	YACGTR	1 cut(s)	1125
BsaJI	CCNNGG	5 cut(s)	453, 789, 1098, 1179, 1194
BsaWI	WCCGGW	1 cut(s)	852
BsaXI	ACNNNNNCTCC	2 cut(s)	866, 896
Bsc4I	CCNNNNNNNGG	6 cut(s)	108, 454, 687, 837, 918, 1200
Bse118I	RCCGGY	1 cut(s)	852
Bse1I	ACTGG	1 cut(s)	715
BseBI	CCWGG	2 cut(s)	791, 959
BseCI	ATCGAT	1 cut(s)	986
BseDI	CCNNGG	5 cut(s)	453, 789, 1098, 1179, 1194
BseGI	GGATG	8 cut(s)	142, 210, 214, 337, 766, 841, 927, 1204
BseLI	CCNNNNNNNGG	6 cut(s)	108, 454, 687, 837, 918, 1200
BseMII	CTCAG	1 cut(s)	518
BseNI	ACTGG	1 cut(s)	715
BseRI	GAGGAG	4 cut(s)	857, 871, 1071, 1108
BseX3I	CGGCCG	1 cut(s)	1101
BseXI	GCAGC	2 cut(s)	316, 1162
BsgI	GTGCAG	1 cut(s)	792
Bsh1285I	CGRYCG	1 cut(s)	1104
BshFI	GGCC	3 cut(s)	777, 911, 1103
BshTI	ACCGGT	1 cut(s)	852
BshVI	ATCGAT	1 cut(s)	986
BsiEI	CGRYCG	1 cut(s)	1104
BsiHKAI	GWGCWC	1 cut(s)	897
BsiSI	CCGG	1 cut(s)	853
BslFI	GGGAC	2 cut(s)	485, 1039
BslI	CCNNNNNNNGG	6 cut(s)	108, 454, 687, 837, 918, 1200
BsmAI	GTCTC	1 cut(s)	658
BsmFI	GGGAC	2 cut(s)	485, 1039
BsnI	GGCC	3 cut(s)	777, 911, 1103
Bsp1286I	GDGCHC	1 cut(s)	897
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	1031
BspACI	CCGC	3 cut(s)	681, 1066, 1104
BspANI	GGCC	3 cut(s)	777, 911, 1103
BspCNI	CTCAG	1 cut(s)	517
BspDI	ATCGAT	1 cut(s)	986
BspLI	GGNNCC	1 cut(s)	459
BspMI	ACCTGC	1 cut(s)	757
BspTI	CTTAAG	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	852
BsrGI	TGTACA	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	715
BssAI	RCCGGY	1 cut(s)	852
BssECI	CCNNGG	5 cut(s)	453, 789, 1098, 1179, 1194
BssMI	GATC	1 cut(s)	1031
BssSI	CACGAG	1 cut(s)	890
BssT1I	CCWWGG	3 cut(s)	453, 1179, 1194
Bst2BI	CACGAG	1 cut(s)	890
Bst2UI	CCWGG	2 cut(s)	791, 959
Bst4CI	ACNGT	6 cut(s)	119, 281, 300, 368, 527, 820
Bst6I	CTCTTC	1 cut(s)	73
BstAFI	CTTAAG	1 cut(s)	106
BstAPI	GCANNNNNTGC	1 cut(s)	847
BstAUI	TGTACA	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	1125
BstC8I	GCNNGC	2 cut(s)	64, 222
BstDEI	CTNAG	3 cut(s)	231, 391, 504
BstDSI	CCRYGG	1 cut(s)	1098
BstF5I	GGATG	8 cut(s)	142, 210, 214, 337, 766, 841, 927, 1204
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	1 cut(s)	1034
BstMAI	GTCTC	1 cut(s)	658
BstMBI	GATC	1 cut(s)	1031
BstMCI	CGRYCG	1 cut(s)	1104
BstMWI	GCNNNNNNNGC	2 cut(s)	310, 847
BstNI	CCWGG	2 cut(s)	791, 959
BstSCI	CCNGG	2 cut(s)	789, 957
BstSFI	CTRYAG	1 cut(s)	651
BstV1I	GCAGC	2 cut(s)	316, 1162
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	1031
BstXI	CCANNNNNNTGG	2 cut(s)	468, 907
BstYI	RGATCY	1 cut(s)	1031
BstZI	CGGCCG	1 cut(s)	1101
Bsu15I	ATCGAT	1 cut(s)	986
BsuI	GTATCC	1 cut(s)	356
BsuRI	GGCC	3 cut(s)	777, 911, 1103
BsuTUI	ATCGAT	1 cut(s)	986
BtgI	CCRYGG	1 cut(s)	1098
BtrI	CACGTC	1 cut(s)	907
BtsCI	GGATG	8 cut(s)	142, 210, 214, 337, 766, 841, 927, 1204
BtsIMutI	CAGTG	2 cut(s)	123, 305
BveI	ACCTGC	1 cut(s)	757
Cac8I	GCNNGC	2 cut(s)	64, 222
CfoI	GCGC	1 cut(s)	74
Cfr10I	RCCGGY	1 cut(s)	852
Cfr13I	GGNCC	2 cut(s)	775, 955
ClaI	ATCGAT	1 cut(s)	986
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	3 cut(s)	193, 1089, 1126
CspAI	ACCGGT	1 cut(s)	852
CspCI	CAANNNNNGTGG	2 cut(s)	1111, 1146
CviAII	CATG	3 cut(s)	757, 1086, 1108
CviQI	GTAC	3 cut(s)	193, 1089, 1126
DdeI	CTNAG	3 cut(s)	231, 391, 504
DpnI	GATC	1 cut(s)	1033
DpnII	GATC	1 cut(s)	1031
DraI	TTTAAA	2 cut(s)	439, 484
EaeI	YGGCCR	2 cut(s)	909, 1101
EagI	CGGCCG	1 cut(s)	1101
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
EclXI	CGGCCG	1 cut(s)	1101
Eco130I	CCWWGG	3 cut(s)	453, 1179, 1194
Eco32I	GATATC	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	955
Eco52I	CGGCCG	1 cut(s)	1101
EcoRII	CCWGG	2 cut(s)	789, 957
EcoRV	GATATC	1 cut(s)	99
EcoT14I	CCWWGG	3 cut(s)	453, 1179, 1194
ErhI	CCWWGG	3 cut(s)	453, 1179, 1194
FaeI	CATG	3 cut(s)	760, 1089, 1111
FaiI	YATR	8 cut(s)	147, 191, 399, 539, 566, 758, 1087, 1109
FaqI	GGGAC	2 cut(s)	485, 1039
FatI	CATG	3 cut(s)	756, 1085, 1107
FauI	CCCGC	1 cut(s)	1073
FblI	GTMKAC	1 cut(s)	650
Fnu4HI	GCNGC	4 cut(s)	305, 681, 1104, 1176
FokI	GGATG	7 cut(s)	149, 217, 221, 324, 773, 828, 934
Fsp4HI	GCNGC	4 cut(s)	305, 681, 1104, 1176
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	4 cut(s)	305, 681, 1104, 1176
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	3 cut(s)	777, 911, 1103
HapII	CCGG	1 cut(s)	853
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	3 cut(s)	760, 1089, 1111
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HincII	GTYRAC	5 cut(s)	553, 708, 823, 858, 940
HindII	GTYRAC	5 cut(s)	553, 708, 823, 858, 940
HindIII	AAGCTT	1 cut(s)	418
HinfI	GANTC	5 cut(s)	444, 878, 1078, 1115, 1186
HpaII	CCGG	1 cut(s)	853
HphI	GGTGA	5 cut(s)	26, 173, 647, 1009, 1195
Hpy166II	GTNNAC	9 cut(s)	115, 530, 553, 651, 708, 823, 858, 940, 955
Hpy188I	TCNGA	9 cut(s)	277, 287, 342, 411, 601, 628, 663, 846, 1012
Hpy188III	TCNNGA	3 cut(s)	262, 1019, 1029
Hpy8I	GTNNAC	9 cut(s)	115, 530, 553, 651, 708, 823, 858, 940, 955
Hpy99I	CGWCG	2 cut(s)	878, 908
HpyAV	CCTTC	3 cut(s)	5, 237, 321
HpyCH4III	ACNGT	6 cut(s)	119, 281, 300, 368, 527, 820
HpyCH4IV	ACGT	3 cut(s)	906, 942, 1124
HpyCH4V	TGCA	5 cut(s)	224, 523, 748, 809, 850
HpyF10VI	GCNNNNNNNGC	2 cut(s)	310, 847
HpyF3I	CTNAG	3 cut(s)	231, 391, 504
HpySE526I	ACGT	3 cut(s)	906, 942, 1124
Hsp92II	CATG	3 cut(s)	760, 1089, 1111
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	1031
LmnI	GCTCC	3 cut(s)	310, 690, 870
Lsp1109I	GCAGC	2 cut(s)	316, 1162
LweI	GCATC	4 cut(s)	127, 762, 837, 850
MaeII	ACGT	3 cut(s)	906, 942, 1124
MalI	GATC	1 cut(s)	1033
MboI	GATC	1 cut(s)	1031
MboII	GAAGA	5 cut(s)	16, 90, 226, 827, 988
MflI	RGATCY	1 cut(s)	1031
MhlI	GDGCHC	1 cut(s)	897
MluCI	AATT	4 cut(s)	128, 1000, 1072, 1168
MlyI	GAGTC	3 cut(s)	872, 1072, 1109
MmeI	TCCRAC	2 cut(s)	126, 182
MroXI	GAANNNNTTC	1 cut(s)	331
MseI	TTAA	7 cut(s)	107, 294, 315, 438, 483, 771, 1166
MslI	CAYNNNNRTG	2 cut(s)	245, 905
MspA1I	CMGCKG	1 cut(s)	307
MspCI	CTTAAG	1 cut(s)	106
MspI	CCGG	1 cut(s)	853
MspR9I	CCNGG	2 cut(s)	791, 959
MvaI	CCWGG	2 cut(s)	791, 959
MwoI	GCNNNNNNNGC	2 cut(s)	310, 847
NdeII	GATC	1 cut(s)	1031
NlaIII	CATG	3 cut(s)	760, 1089, 1111
NlaIV	GGNNCC	1 cut(s)	459
OliI	CACNNNNGTG	1 cut(s)	905
PdmI	GAANNNNTTC	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	444, 1186
PinAI	ACCGGT	1 cut(s)	852
PkrI	GCNGC	4 cut(s)	306, 682, 1105, 1177
PleI	GAGTC	3 cut(s)	872, 1072, 1109
PpsI	GAGTC	3 cut(s)	872, 1072, 1109
Ppu21I	YACGTR	1 cut(s)	1125
Psp6I	CCWGG	2 cut(s)	789, 957
PspGI	CCWGG	2 cut(s)	789, 957
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	2 cut(s)	775, 955
PsuI	RGATCY	1 cut(s)	1031
PvuII	CAGCTG	1 cut(s)	307
RsaI	GTAC	3 cut(s)	194, 1090, 1127
RsaNI	GTAC	3 cut(s)	193, 1089, 1126
RseI	CAYNNNNRTG	2 cut(s)	245, 905
SaqAI	TTAA	7 cut(s)	107, 294, 315, 438, 483, 771, 1166
SatI	GCNGC	4 cut(s)	305, 681, 1104, 1176
Sau3AI	GATC	1 cut(s)	1031
Sau96I	GGNCC	2 cut(s)	775, 955
SchI	GAGTC	3 cut(s)	872, 1072, 1109
ScrFI	CCNGG	2 cut(s)	791, 959
SduI	GDGCHC	1 cut(s)	897
SfaNI	GCATC	4 cut(s)	127, 762, 837, 850
SfcI	CTRYAG	1 cut(s)	651
SinI	GGWCC	1 cut(s)	955
SmiMI	CAYNNNNRTG	2 cut(s)	245, 905
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	4 cut(s)	128, 1000, 1072, 1168
SsiI	CCGC	3 cut(s)	681, 1066, 1104
SspI	AATATT	1 cut(s)	782
StyD4I	CCNGG	2 cut(s)	789, 957
StyI	CCWWGG	3 cut(s)	453, 1179, 1194
TaaI	ACNGT	6 cut(s)	119, 281, 300, 368, 527, 820
TaiI	ACGT	3 cut(s)	909, 945, 1127
TaqI	TCGA	8 cut(s)	85, 873, 929, 986, 1020, 1028, 1094, 1189
TasI	AATT	4 cut(s)	128, 1000, 1072, 1168
TatI	WGTACW	2 cut(s)	192, 1088
TauI	GCSGC	2 cut(s)	683, 1106
TfiI	GAWTC	2 cut(s)	444, 1186
Tru1I	TTAA	7 cut(s)	107, 294, 315, 438, 483, 771, 1166
Tru9I	TTAA	7 cut(s)	107, 294, 315, 438, 483, 771, 1166
TscAI	CASTG	2 cut(s)	130, 305
TseI	GCWGC	2 cut(s)	304, 1175
TspDTI	ATGAA	6 cut(s)	17, 24, 394, 750, 755, 996
TspGWI	ACGGA	1 cut(s)	934
TspRI	CASTG	2 cut(s)	130, 305
Vha464I	CTTAAG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	955
XapI	RAATTY	3 cut(s)	1000, 1072, 1168
XmiI	GTMKAC	1 cut(s)	650
XmnI	GAANNNNTTC	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.