Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

14340954 .. 14341865

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGATCGTGAAGGGAGCTCCGGTCTCCGATTGCAAATACATGCACTCCATCGGAGCTCCGGCGAACGCCGCCCCCCTCAACTGATACCTCCTCTCCGCTGCTATGTACATCAAGGAGGTAACCTTGGAAGGATTCAAGTCCAGGCAATCTTACAATCAAACGCGGACGGTGGTGCCGGGTTTCTACCCGTTTTTCAATGCCATAACGGGGCTAAACGGGTCGGGAGCTGGTGTATAAGCAAGGCCAGGCCGGAATTACTAAGGCCACCGTGTCAATCGTCTTCGACAATTCAGATCGGGCTCACAGTCCTCTCGGGTATGAGGCCCATTCGTAACTCATCGTCACCCGACAGGTTGAATTTAGTTATGAGGTGCTGTAGTAGTGGAGTGTTCCTAAGGTGGTCTTTGATTGCAGGGAGATTGCCGGGTCGAACAGACAATGAAATCAAGAACTACTGGTACACTCGTTTAAGCAAGAAAATCCAGCAGAAAGAGAAGCAAAGTAACAATGAAGCTAATGGGACGATACAATTTCCGGCAGTAGATGAGAAACCAAGTGTAGCAAATGATGATCAGAAGGTCCATGTCGAAATGAAGCAAGAGTGCTTGGCAGCAGCAGCGGGTACAAGTGCGGCTCTAATCAAGAAAGAGGAGGTGATCGATTCTGAGGACTACTCCAACACTTACATTAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

233

Amino Acids

25.65

Weight (kDa)

9.35

Isoelectric Point (pI)

55.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	133 - 156	2.8e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AccII	CGCG	1 cut(s)	164
AciI	CCGC	5 cut(s)	70, 97, 164, 620, 632
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	358
AfaI	GTAC	3 cut(s)	108, 461, 625
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgsI	TTSAA	3 cut(s)	137, 197, 358
AjnI	CCWGG	2 cut(s)	141, 245
AluBI	AGCT	4 cut(s)	18, 57, 228, 515
AluI	AGCT	4 cut(s)	18, 57, 228, 515
Alw21I	GWGCWC	2 cut(s)	20, 59
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	313
AoxI	GGCC	4 cut(s)	243, 248, 263, 323
ApeKI	GCWGC	4 cut(s)	99, 611, 614, 617
ApoI	RAATTY	1 cut(s)	358
AspS9I	GGNCC	2 cut(s)	324, 580
AsuC2I	CCSGG	2 cut(s)	178, 426
AsuHPI	GGTGA	2 cut(s)	336, 667
AvaI	CYCGRG	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	580
AxyI	CCTNAGG	1 cut(s)	395
BaeI	ACNNNNGTAYC	2 cut(s)	451, 484
BanI	GGYRCC	1 cut(s)	173
BanII	GRGCYC	3 cut(s)	20, 59, 303
BbsI	GAAGAC	1 cut(s)	273
Bbv12I	GWGCWC	2 cut(s)	20, 59
BbvI	GCAGC	4 cut(s)	86, 623, 626, 629
BccI	CCATC	1 cut(s)	57
BciT130I	CCWGG	2 cut(s)	143, 247
BclI	TGATCA	1 cut(s)	571
BcnI	CCSGG	2 cut(s)	178, 426
BcoDI	GTCTC	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	376
BisI	GCNGC	6 cut(s)	70, 100, 612, 615, 618, 633
BlsI	GCNGC	6 cut(s)	71, 101, 613, 616, 619, 634
Bme1390I	CCNGG	4 cut(s)	143, 178, 247, 426
Bme18I	GGWCC	1 cut(s)	580
BmeT110I	CYCGRG	1 cut(s)	313
BmgT120I	GGNCC	2 cut(s)	324, 580
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	4 cut(s)	143, 178, 247, 426
BpiI	GAAGAC	1 cut(s)	273
BplI	GAGNNNNNCTC	2 cut(s)	659, 691
BpuMI	CCSGG	2 cut(s)	178, 426
Bsa29I	ATCGAT	1 cut(s)	660
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	20
BsaXI	ACNNNNNCTCC	8 cut(s)	7, 30, 37, 60, 78, 108, 217, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	461
Bse21I	CCTNAGG	1 cut(s)	395
BseBI	CCWGG	2 cut(s)	143, 247
BseCI	ATCGAT	1 cut(s)	660
BseDI	CCNNGG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	657
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	2 cut(s)	81, 665
BseXI	GCAGC	4 cut(s)	86, 623, 626, 629
Bsh1236I	CGCG	1 cut(s)	164
BshFI	GGCC	4 cut(s)	245, 250, 265, 325
BshNI	GGYRCC	1 cut(s)	173
BshVI	ATCGAT	1 cut(s)	660
BsiHKAI	GWGCWC	2 cut(s)	20, 59
BsiHKCI	CYCGRG	1 cut(s)	313
BsiSI	CCGG	6 cut(s)	21, 60, 177, 251, 425, 536
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	535
BsnI	GGCC	4 cut(s)	245, 250, 265, 325
Bso31I	GGTCTC	1 cut(s)	29
BsoBI	CYCGRG	1 cut(s)	313
Bsp1286I	GDGCHC	3 cut(s)	20, 59, 303
Bsp1407I	TGTACA	1 cut(s)	106
Bsp143I	GATC	4 cut(s)	4, 294, 571, 657
BspACI	CCGC	5 cut(s)	70, 97, 164, 620, 632
BspANI	GGCC	4 cut(s)	245, 250, 265, 325
BspCNI	CTCAG	1 cut(s)	658
BspDI	ATCGAT	1 cut(s)	660
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	175
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	461
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	4 cut(s)	4, 294, 571, 657
BssT1I	CCWWGG	1 cut(s)	124
Bst2UI	CCWGG	2 cut(s)	143, 247
Bst4CI	ACNGT	3 cut(s)	170, 270, 307
BstAUI	TGTACA	1 cut(s)	106
BstDEI	CTNAG	3 cut(s)	260, 395, 666
BstEII	GGTNACC	1 cut(s)	119
BstFNI	CGCG	1 cut(s)	164
BstKTI	GATC	4 cut(s)	7, 297, 574, 660
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	4 cut(s)	4, 294, 571, 657
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 617
BstNI	CCWGG	2 cut(s)	143, 247
BstNSI	RCATGY	1 cut(s)	44
BstPI	GGTNACC	1 cut(s)	119
BstSCI	CCNGG	4 cut(s)	141, 176, 245, 424
BstSFI	CTRYAG	1 cut(s)	376
BstUI	CGCG	1 cut(s)	164
BstV1I	GCAGC	4 cut(s)	86, 623, 626, 629
BstV2I	GAAGAC	1 cut(s)	273
Bsu15I	ATCGAT	1 cut(s)	660
Bsu36I	CCTNAGG	1 cut(s)	395
BsuRI	GGCC	4 cut(s)	245, 250, 265, 325
BsuTUI	ATCGAT	1 cut(s)	660
Cfr13I	GGNCC	2 cut(s)	324, 580
ClaI	ATCGAT	1 cut(s)	660
Csp6I	GTAC	3 cut(s)	107, 460, 624
CviAII	CATG	2 cut(s)	41, 584
CviQI	GTAC	3 cut(s)	107, 460, 624
DdeI	CTNAG	3 cut(s)	260, 395, 666
DpnI	GATC	4 cut(s)	6, 296, 573, 659
DpnII	GATC	4 cut(s)	4, 294, 571, 657
Ecl136II	GAGCTC	2 cut(s)	18, 57
Eco130I	CCWWGG	1 cut(s)	124
Eco24I	GRGCYC	3 cut(s)	20, 59, 303
Eco31I	GGTCTC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	580
Eco53kI	GAGCTC	2 cut(s)	18, 57
Eco81I	CCTNAGG	1 cut(s)	395
Eco88I	CYCGRG	1 cut(s)	313
Eco91I	GGTNACC	1 cut(s)	119
EcoICRI	GAGCTC	2 cut(s)	18, 57
EcoO65I	GGTNACC	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	141, 245
EcoT14I	CCWWGG	1 cut(s)	124
EcoT38I	GRGCYC	3 cut(s)	20, 59, 303
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	2 cut(s)	44, 587
FaiI	YATR	7 cut(s)	42, 105, 204, 236, 320, 368, 585
FalI	AAGNNNNNCTT	2 cut(s)	388, 420
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	2 cut(s)	40, 583
FauI	CCCGC	1 cut(s)	613
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	6 cut(s)	70, 100, 612, 615, 618, 633
FriOI	GRGCYC	3 cut(s)	20, 59, 303
Fsp4HI	GCNGC	6 cut(s)	70, 100, 612, 615, 618, 633
GluI	GCNGC	6 cut(s)	70, 100, 612, 615, 618, 633
HaeIII	GGCC	4 cut(s)	245, 250, 265, 325
HapII	CCGG	6 cut(s)	21, 60, 177, 251, 425, 536
Hin1II	CATG	2 cut(s)	44, 587
HinfI	GANTC	2 cut(s)	133, 662
HpaII	CCGG	6 cut(s)	21, 60, 177, 251, 425, 536
HphI	GGTGA	2 cut(s)	336, 667
Hpy166II	GTNNAC	1 cut(s)	462
Hpy188I	TCNGA	5 cut(s)	29, 54, 294, 576, 667
Hpy188III	TCNNGA	4 cut(s)	8, 223, 448, 643
Hpy8I	GTNNAC	1 cut(s)	462
HpyAV	CCTTC	3 cut(s)	5, 123, 571
HpyCH4III	ACNGT	3 cut(s)	170, 270, 307
HpyCH4V	TGCA	3 cut(s)	34, 44, 413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 617
HpyF3I	CTNAG	3 cut(s)	260, 395, 666
Hsp92II	CATG	2 cut(s)	44, 587
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	4 cut(s)	4, 294, 571, 657
LmnI	GCTCC	5 cut(s)	15, 23, 54, 62, 225
Lsp1109I	GCAGC	4 cut(s)	86, 623, 626, 629
MaeIII	GTNAC	4 cut(s)	119, 332, 342, 503
MalI	GATC	4 cut(s)	6, 296, 573, 659
MboI	GATC	4 cut(s)	4, 294, 571, 657
MboII	GAAGA	1 cut(s)	273
MhlI	GDGCHC	3 cut(s)	20, 59, 303
MluCI	AATT	5 cut(s)	254, 288, 358, 530, 694
MseI	TTAA	3 cut(s)	470, 690, 697
MspA1I	CMGCKG	2 cut(s)	99, 620
MspI	CCGG	6 cut(s)	21, 60, 177, 251, 425, 536
MspR9I	CCNGG	4 cut(s)	143, 178, 247, 426
MvaI	CCWGG	2 cut(s)	143, 247
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	2 cut(s)	69, 617
NciI	CCSGG	2 cut(s)	178, 426
NdeII	GATC	4 cut(s)	4, 294, 571, 657
NlaIII	CATG	2 cut(s)	44, 587
NlaIV	GGNNCC	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	342
NspI	RCATGY	1 cut(s)	44
PfeI	GAWTC	2 cut(s)	133, 662
PkrI	GCNGC	6 cut(s)	71, 101, 613, 616, 619, 634
Psp124BI	GAGCTC	2 cut(s)	20, 59
Psp6I	CCWGG	2 cut(s)	141, 245
PspEI	GGTNACC	1 cut(s)	119
PspGI	CCWGG	2 cut(s)	141, 245
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	2 cut(s)	324, 580
PsrI	GAACNNNNNNTAC	2 cut(s)	443, 475
RsaI	GTAC	3 cut(s)	108, 461, 625
RsaNI	GTAC	3 cut(s)	107, 460, 624
SacI	GAGCTC	2 cut(s)	20, 59
SaqAI	TTAA	3 cut(s)	470, 690, 697
SatI	GCNGC	6 cut(s)	70, 100, 612, 615, 618, 633
Sau3AI	GATC	4 cut(s)	4, 294, 571, 657
Sau96I	GGNCC	2 cut(s)	324, 580
ScrFI	CCNGG	4 cut(s)	143, 178, 247, 426
SduI	GDGCHC	3 cut(s)	20, 59, 303
SfcI	CTRYAG	1 cut(s)	376
SinI	GGWCC	1 cut(s)	580
Sse9I	AATT	5 cut(s)	254, 288, 358, 530, 694
SsiI	CCGC	5 cut(s)	70, 97, 164, 620, 632
SstI	GAGCTC	2 cut(s)	20, 59
StyD4I	CCNGG	4 cut(s)	141, 176, 245, 424
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	3 cut(s)	170, 270, 307
TaqI	TCGA	4 cut(s)	284, 430, 588, 660
TasI	AATT	5 cut(s)	254, 288, 358, 530, 694
TatI	WGTACW	1 cut(s)	106
TauI	GCSGC	2 cut(s)	72, 635
TfiI	GAWTC	2 cut(s)	133, 662
Tru1I	TTAA	3 cut(s)	470, 690, 697
Tru9I	TTAA	3 cut(s)	470, 690, 697
TseFI	GTSAC	1 cut(s)	342
TseI	GCWGC	4 cut(s)	99, 611, 614, 617
Tsp45I	GTSAC	1 cut(s)	342
TspDTI	ATGAA	3 cut(s)	456, 525, 608
VpaK11BI	GGWCC	1 cut(s)	580
XapI	RAATTY	1 cut(s)	358
XceI	RCATGY	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.