FvH4_1g27300
HSP70 Family

Heat shock cognate 70 kDa

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
N/A
Physical Location & Seq
Forward (+)
19011101 .. 19011571
471 bp
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UTR
Exon/CDS
Intron
FvH4_1g27300.t1

Sequence Viewer

Length: 471 bp
ATGAGGGAGATTTCTGAGGCTTACCTTGGATCAACTGTGCAGAATGCTGTTATCACTGTCCCTGCTTACTTTAATAACTCGCAGTGTGAGGCTACAAAGAAAGCTGGTTTTGTTGCCGGCCTAAATGTGATGCGTATTATCAACAAACCAACTATAGTAGCTATTGCTTATGAGTTTGACAAGAAGGTTGGTTGGTATGGAAAAAGAAATGTGCTGGTATATGACTTTGGTGGTGGTACATTGGATGTTTCTCTACTTGAGGAAAAGAAGAGGTTGGAGGTTGAGGAGAAGCGAAGAGTCGAGAAGGAGTATGCAAAGCTATGGGAAAAGCATAAATCAGAGCTGCTGGAGAAAGTAAAGGTTGGGATAATGTACAAAAAACTTAAGGAGAAACACCGAAAAGTTGAGGAGGAGTATCAAAAGCTTGATGAGACTTTGTGGATTATTGTGGATTGTGGATTACTGTGTTGA
Functional Annotation

Protein Analysis

157

Amino Acids

18.08

Weight (kDa)

8.82

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 1 - 88 1.3e-33 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 37
AfaI GTAC 2 cut(s) 238, 374
AflII CTTAAG 1 cut(s) 383
AluBI AGCT 5 cut(s) 104, 161, 319, 343, 424
AluI AGCT 5 cut(s) 104, 161, 319, 343, 424
Alw26I GTCTC 1 cut(s) 425
AlwI GGATC 1 cut(s) 37
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 343
BbvI GCAGC 1 cut(s) 330
BcoDI GTCTC 1 cut(s) 425
BfmI CTRYAG 1 cut(s) 153
BfrI CTTAAG 1 cut(s) 383
BisI GCNGC 1 cut(s) 344
BlsI GCNGC 1 cut(s) 345
BmsI GCATC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 368
BpuEI CTTGAG 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 25
Bse118I RCCGGY 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 25
BseGI GGATG 1 cut(s) 250
BseMII CTCAG 1 cut(s) 6
BseRI GAGGAG 3 cut(s) 299, 422, 425
BseXI GCAGC 1 cut(s) 330
BsgI GTGCAG 1 cut(s) 59
BshFI GGCC 1 cut(s) 120
BsiSI CCGG 1 cut(s) 117
BslFI GGGAC 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 425
BsmFI GGGAC 1 cut(s) 44
BsmI GAATGC 1 cut(s) 49
BsnI GGCC 1 cut(s) 120
Bsp1407I TGTACA 1 cut(s) 372
Bsp143I GATC 1 cut(s) 29
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 1 cut(s) 7
BspPI GGATC 1 cut(s) 37
BspTI CTTAAG 1 cut(s) 383
BsrFI RCCGGY 1 cut(s) 116
BsrGI TGTACA 1 cut(s) 372
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 25
Bst4CI ACNGT 3 cut(s) 37, 58, 465
Bst6I CTCTTC 2 cut(s) 263, 289
BstAFI CTTAAG 1 cut(s) 383
BstAUI TGTACA 1 cut(s) 372
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 250
BstKTI GATC 1 cut(s) 32
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 330
BsuRI GGCC 1 cut(s) 120
BtsCI GGATG 1 cut(s) 250
BtsI GCAGTG 1 cut(s) 89
BtsIMutI CAGTG 2 cut(s) 54, 89
Cac8I GCNNGC 1 cut(s) 118
Cfr10I RCCGGY 1 cut(s) 116
Csp6I GTAC 2 cut(s) 237, 373
CviJI RGCY 8 cut(s) 20, 92, 104, 120, 161, 319, 343, 424
CviKI_1 RGCY 8 cut(s) 20, 92, 104, 120, 161, 319, 343, 424
CviQI GTAC 2 cut(s) 237, 373
DdeI CTNAG 1 cut(s) 15
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
Eam1104I CTCTTC 2 cut(s) 263, 289
EarI CTCTTC 2 cut(s) 263, 289
Eco130I CCWWGG 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 25
FaiI YATR 8 cut(s) 155, 171, 198, 220, 222, 312, 322, 333
FaqI GGGAC 1 cut(s) 44
Fnu4HI GCNGC 1 cut(s) 344
FokI GGATG 1 cut(s) 257
Fsp4HI GCNGC 1 cut(s) 344
GluI GCNGC 1 cut(s) 344
GsuI CTGGAG 1 cut(s) 368
HaeIII GGCC 1 cut(s) 120
HapII CCGG 1 cut(s) 117
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 1 cut(s) 297
HpaII CCGG 1 cut(s) 117
Hpy188I TCNGA 2 cut(s) 16, 340
Hpy188III TCNNGA 1 cut(s) 301
HpyAV CCTTC 2 cut(s) 178, 298
HpyCH4III ACNGT 3 cut(s) 37, 58, 465
HpyCH4V TGCA 2 cut(s) 40, 314
HpyF3I CTNAG 1 cut(s) 15
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
Kzo9I GATC 1 cut(s) 29
LpnPI CCDG 5 cut(s) 75, 90, 130, 200, 332
Lsp1109I GCAGC 1 cut(s) 330
LweI GCATC 1 cut(s) 120
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MboII GAAGA 2 cut(s) 280, 306
MlyI GAGTC 1 cut(s) 306
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 8 cut(s) 10, 82, 253, 264, 271, 277, 400, 403
MroNI GCCGGC 1 cut(s) 116
MseI TTAA 2 cut(s) 72, 384
MspCI CTTAAG 1 cut(s) 383
MspI CCGG 1 cut(s) 117
Mva1269I GAATGC 1 cut(s) 49
NaeI GCCGGC 1 cut(s) 118
NdeII GATC 1 cut(s) 29
NgoMIV GCCGGC 1 cut(s) 116
PctI GAATGC 1 cut(s) 49
PdiI GCCGGC 1 cut(s) 118
PkrI GCNGC 1 cut(s) 345
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
RsaI GTAC 2 cut(s) 238, 374
RsaNI GTAC 2 cut(s) 237, 373
SaqAI TTAA 2 cut(s) 72, 384
SatI GCNGC 1 cut(s) 344
Sau3AI GATC 1 cut(s) 29
SchI GAGTC 1 cut(s) 306
SfaNI GCATC 1 cut(s) 120
SfcI CTRYAG 1 cut(s) 153
SmlI CTYRAG 2 cut(s) 257, 383
SmoI CTYRAG 2 cut(s) 257, 383
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 3 cut(s) 37, 58, 465
TaqI TCGA 1 cut(s) 300
TatI WGTACW 1 cut(s) 372
Tru1I TTAA 2 cut(s) 72, 384
Tru9I TTAA 2 cut(s) 72, 384
TscAI CASTG 2 cut(s) 61, 89
TseI GCWGC 1 cut(s) 343
TspRI CASTG 2 cut(s) 61, 89
Vha464I CTTAAG 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.