FvH4_1g28530
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
N/A
Physical Location & Seq
Forward (+)
20721522 .. 20722173
652 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28530.t1

Sequence Viewer

Length: 273 bp
ATGCAGTGTGTCCTACTATGTATTAATAGAGGGATATTTGGAGTCCCTTCTGCTAAGAAAGCTGAGGTTGAAGGTCTGGTTAAGCAGCTGGAGTCTCAGAATCCAACTCCAGATCCTACCGTGAATTTAGAGAAGCACAATTACAATTCTAGGCTCAAGAAGAACAAAGCTGGGATTGAGGGACTTCATCTCATTGGGAGGCTCAAGGCTAAGGCCGCTCGGTTTAAGCAGTTTAGCTTTAGTTCTGGTAGCTTTAGGTTGTGTACATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

91

Amino Acids

9.97

Weight (kDa)

9.96

Isoelectric Point (pI)

30.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 271
AccBSI CCGCTC 1 cut(s) 218
AciI CCGC 1 cut(s) 216
AclWI GGATC 1 cut(s) 107
AcsI RAATTY 1 cut(s) 124
AfaI GTAC 1 cut(s) 265
AgsI TTSAA 1 cut(s) 71
AluBI AGCT 5 cut(s) 62, 88, 170, 237, 252
AluI AGCT 5 cut(s) 62, 88, 170, 237, 252
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 1 cut(s) 107
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 1 cut(s) 124
AseI ATTAAT 1 cut(s) 24
BarI GAAGNNNNNNTAC 2 cut(s) 125, 157
BbvCI CCTCAGC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 1 cut(s) 150
BisI GCNGC 2 cut(s) 86, 216
BlsI GCNGC 2 cut(s) 87, 217
BpmI CTGGAG 2 cut(s) 93, 110
Bpu10I CCTNAGC 2 cut(s) 63, 210
BpuEI CTTGAG 2 cut(s) 140, 188
BseMII CTCAG 2 cut(s) 54, 110
BseXI GCAGC 1 cut(s) 97
BseYI CCCAGC 1 cut(s) 170
BshFI GGCC 1 cut(s) 215
BslFI GGGAC 2 cut(s) 29, 195
BsmAI GTCTC 1 cut(s) 99
BsmFI GGGAC 2 cut(s) 29, 195
BsnI GGCC 1 cut(s) 215
Bsp1407I TGTACA 1 cut(s) 263
Bsp143I GATC 1 cut(s) 112
BspACI CCGC 1 cut(s) 216
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 2 cut(s) 55, 109
BspPI GGATC 1 cut(s) 107
BsrBI CCGCTC 1 cut(s) 218
BsrGI TGTACA 1 cut(s) 263
BssMI GATC 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 121
BstAUI TGTACA 1 cut(s) 263
BstDEI CTNAG 4 cut(s) 54, 63, 96, 210
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 2 cut(s) 59, 215
BstV1I GCAGC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 1 cut(s) 215
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 11
Csp6I GTAC 1 cut(s) 264
CviJI RGCY 9 cut(s) 62, 88, 154, 170, 202, 209, 215, 237, 252
CviKI_1 RGCY 9 cut(s) 62, 88, 154, 170, 202, 209, 215, 237, 252
CviQI GTAC 1 cut(s) 264
DdeI CTNAG 4 cut(s) 54, 63, 96, 210
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
FaiI YATR 2 cut(s) 19, 271
FaqI GGGAC 2 cut(s) 29, 195
Fnu4HI GCNGC 2 cut(s) 86, 216
Fsp4HI GCNGC 2 cut(s) 86, 216
FspBI CTAG 1 cut(s) 150
GluI GCNGC 2 cut(s) 86, 216
GsaI CCCAGC 1 cut(s) 174
GsuI CTGGAG 2 cut(s) 93, 110
HaeIII GGCC 1 cut(s) 215
HinfI GANTC 3 cut(s) 42, 92, 100
Hpy166II GTNNAC 1 cut(s) 264
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 2 cut(s) 110, 157
Hpy8I GTNNAC 1 cut(s) 264
HpyAV CCTTC 2 cut(s) 57, 65
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 215
HpyF3I CTNAG 4 cut(s) 54, 63, 96, 210
Kzo9I GATC 1 cut(s) 112
LpnPI CCDG 5 cut(s) 62, 74, 123, 156, 231
Lsp1109I GCAGC 1 cut(s) 97
MaeI CTAG 1 cut(s) 150
MalI GATC 1 cut(s) 114
MbiI CCGCTC 1 cut(s) 218
MboI GATC 1 cut(s) 112
MboII GAAGA 1 cut(s) 172
MflI RGATCY 1 cut(s) 112
MluCI AATT 3 cut(s) 124, 139, 145
MlyI GAGTC 2 cut(s) 51, 101
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 4 cut(s) 23, 58, 172, 192
MseI TTAA 3 cut(s) 24, 81, 225
MspA1I CMGCKG 1 cut(s) 88
MwoI GCNNNNNNNGC 2 cut(s) 59, 215
NdeII GATC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 2 cut(s) 87, 217
PleI GAGTC 2 cut(s) 50, 100
PpsI GAGTC 2 cut(s) 50, 100
PshBI ATTAAT 1 cut(s) 24
PsiI TTATAA 1 cut(s) 271
PspFI CCCAGC 1 cut(s) 170
PsuI RGATCY 1 cut(s) 112
PvuII CAGCTG 1 cut(s) 88
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
SaqAI TTAA 3 cut(s) 24, 81, 225
SatI GCNGC 2 cut(s) 86, 216
Sau3AI GATC 1 cut(s) 112
SchI GAGTC 2 cut(s) 51, 101
SetI ASST 8 cut(s) 64, 69, 76, 90, 172, 239, 254, 260
SmlI CTYRAG 2 cut(s) 155, 203
SmoI CTYRAG 2 cut(s) 155, 203
Sse9I AATT 3 cut(s) 124, 139, 145
SsiI CCGC 1 cut(s) 216
SspMI CTAG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 121
TasI AATT 3 cut(s) 124, 139, 145
TatI WGTACW 1 cut(s) 263
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 3 cut(s) 24, 81, 225
Tru9I TTAA 3 cut(s) 24, 81, 225
TseI GCWGC 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 176
VspI ATTAAT 1 cut(s) 24
XapI RAATTY 1 cut(s) 124
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.