FvH4_2g01411
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
N/A
Physical Location & Seq
Forward (+)
1308936 .. 1311235
2300 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g01411.t1

Sequence Viewer

Length: 840 bp
ATGCCAATGTCGACACGAGAAGAAGAAGAGGAACACGCAATAGGGATCGACTTGGGAACAACCTACTCGTGCGTGGCTGTTTGGCGGAATAACAGTGCAGAAATCATACCAAACGATCAGGGCAACAGAACAACTCCATCCTACGTTGCCTTCACTGATAACGAACGACTCGTAGGTGATGCCGCACTTAACCAGGCCATCAGAAATCCCACTACCTCCATATTCGATCAATGTCTTGAGATGTCAATTTTGATTCCAAGAAACAGCAGAGTTCCCATCAAGATGAACAAGAGGTTTACTACAAAGTGTGACAATCTACGTAGCGTGTTGTTCATTGTATTTGAAGGTGAGAGTAAGAAACCCTCAAATAATAACTTTCTGGGTGAATTTGAGTTAGGCGATATTCCTCGAGCTCCCAAGGCTGTTCCTAAGTTTGATGTTTGCTTTGATATTGATGCCAACGGCATCCTGAATGTCTCTGCTAAAGACGAGTCCACTGGCAACAAGAAAGGGATTACAATAAACACTAAGACAAAAATCTCCAGATCATATAATAAAGGTGAGAAAGAAACTGAAAGTGAAGTTGGGAGTGAAACTGAGAATGGAGGTGTAAGTGAAACTAAGCAAGGTGAGTTTATGCTCAACAACACTCCTCCAGCTCCAGAGTATGTTTCTAAGTTTGATACCGACGACAGCCTTCACGTCTCTGCTGAAAAGAAGTCCAAAATCAACACCAAGACAAGAACCATGAGGACTGGAAGATCCTTGCCGAGCAAGCTTAAAACCATGGCAAATCGTTGGCGTGGTTATGTTATTAGCAAATTTGTATGTCTTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

280

Amino Acids

31.06

Weight (kDa)

8.18

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 13 - 76 4.6e-25 Hsp70 protein
HSP70 PF00012 81 - 251 5.3e-22 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 11
AciI CCGC 2 cut(s) 85, 183
AclWI GGATC 2 cut(s) 53, 756
AcsI RAATTY 2 cut(s) 386, 821
AgsI TTSAA 1 cut(s) 344
AjiI CACGTC 1 cut(s) 703
AjnI CCWGG 1 cut(s) 192
AjuI GAANNNNNNNTTGG 2 cut(s) 567, 599
AluBI AGCT 3 cut(s) 413, 659, 778
AluI AGCT 3 cut(s) 413, 659, 778
Alw21I GWGCWC 1 cut(s) 415
Alw26I GTCTC 2 cut(s) 481, 709
AlwI GGATC 2 cut(s) 53, 756
Ama87I CYCGRG 1 cut(s) 408
AoxI GGCC 1 cut(s) 195
ApoI RAATTY 2 cut(s) 386, 821
AsuHPI GGTGA 5 cut(s) 188, 359, 395, 572, 641
AvaI CYCGRG 1 cut(s) 408
BanII GRGCYC 1 cut(s) 415
BauI CACGAG 2 cut(s) 15, 67
Bbv12I GWGCWC 1 cut(s) 415
BccI CCATC 3 cut(s) 145, 206, 284
BceAI ACGGC 1 cut(s) 478
BciT130I CCWGG 1 cut(s) 194
BcoDI GTCTC 2 cut(s) 481, 709
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 194
BmeT110I CYCGRG 1 cut(s) 408
BmgBI CACGTC 1 cut(s) 703
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 3 cut(s) 169, 445, 474
BpmI CTGGAG 3 cut(s) 526, 639, 645
BpuEI CTTGAG 1 cut(s) 257
BsaAI YACGTR 1 cut(s) 320
BsaJI CCNNGG 2 cut(s) 417, 786
Bse1I ACTGG 2 cut(s) 502, 760
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 2 cut(s) 417, 786
BseGI GGATG 2 cut(s) 137, 465
BseMII CTCAG 1 cut(s) 588
BseNI ACTGG 2 cut(s) 502, 760
BseRI GAGGAG 1 cut(s) 642
BsgI GTGCAG 1 cut(s) 117
BshFI GGCC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 415
BsiHKCI CYCGRG 1 cut(s) 408
BsmAI GTCTC 2 cut(s) 481, 709
BsmBI CGTCTC 1 cut(s) 709
BsnI GGCC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 408
Bsp1286I GDGCHC 1 cut(s) 415
Bsp143I GATC 5 cut(s) 45, 115, 226, 545, 761
Bsp19I CCATGG 1 cut(s) 786
BspACI CCGC 2 cut(s) 85, 183
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 1 cut(s) 589
BspPI GGATC 2 cut(s) 53, 756
BsrI ACTGG 2 cut(s) 502, 760
BssECI CCNNGG 2 cut(s) 417, 786
BssMI GATC 5 cut(s) 45, 115, 226, 545, 761
BssSI CACGAG 2 cut(s) 15, 67
BssT1I CCWWGG 2 cut(s) 417, 786
Bst2BI CACGAG 2 cut(s) 15, 67
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 21
BstBAI YACGTR 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 776
BstDEI CTNAG 5 cut(s) 429, 528, 597, 621, 675
BstDSI CCRYGG 1 cut(s) 786
BstF5I GGATG 2 cut(s) 137, 465
BstKTI GATC 5 cut(s) 48, 118, 229, 548, 764
BstMAI GTCTC 2 cut(s) 481, 709
BstMBI GATC 5 cut(s) 45, 115, 226, 545, 761
BstMWI GCNNNNNNNGC 2 cut(s) 419, 775
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 192
BstSNI TACGTA 1 cut(s) 320
BstX2I RGATCY 1 cut(s) 761
BstYI RGATCY 1 cut(s) 761
BsuRI GGCC 1 cut(s) 197
BtgI CCRYGG 1 cut(s) 786
BtrI CACGTC 1 cut(s) 703
BtsCI GGATG 2 cut(s) 137, 465
BtsIMutI CAGTG 3 cut(s) 100, 153, 495
Cac8I GCNNGC 1 cut(s) 776
CviAII CATG 2 cut(s) 748, 787
CviJI RGCY 7 cut(s) 77, 197, 413, 422, 659, 696, 778
CviKI_1 RGCY 7 cut(s) 77, 197, 413, 422, 659, 696, 778
DdeI CTNAG 5 cut(s) 429, 528, 597, 621, 675
DpnI GATC 5 cut(s) 47, 117, 228, 547, 763
DpnII GATC 5 cut(s) 45, 115, 226, 545, 761
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
EciI GGCGGA 1 cut(s) 100
Ecl136II GAGCTC 1 cut(s) 413
Eco105I TACGTA 1 cut(s) 320
Eco130I CCWWGG 2 cut(s) 417, 786
Eco24I GRGCYC 1 cut(s) 415
Eco53kI GAGCTC 1 cut(s) 413
Eco88I CYCGRG 1 cut(s) 408
EcoICRI GAGCTC 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 192
EcoT14I CCWWGG 2 cut(s) 417, 786
EcoT38I GRGCYC 1 cut(s) 415
ErhI CCWWGG 2 cut(s) 417, 786
Esp3I CGTCTC 1 cut(s) 709
FaeI CATG 2 cut(s) 751, 790
FatI CATG 2 cut(s) 747, 786
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 2 cut(s) 124, 452
FriOI GRGCYC 1 cut(s) 415
Fsp4HI GCNGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 183
GsuI CTGGAG 3 cut(s) 526, 639, 645
HaeIII GGCC 1 cut(s) 197
Hin1II CATG 2 cut(s) 751, 790
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 3 cut(s) 168, 253, 491
HphI GGTGA 5 cut(s) 188, 359, 395, 572, 641
Hpy166II GTNNAC 3 cut(s) 12, 297, 495
Hpy188I TCNGA 1 cut(s) 203
Hpy188III TCNNGA 5 cut(s) 236, 280, 469, 543, 662
Hpy8I GTNNAC 3 cut(s) 12, 297, 495
Hpy99I CGWCG 1 cut(s) 692
HpyAV CCTTC 3 cut(s) 160, 338, 707
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 3 cut(s) 144, 319, 702
HpyCH4V TGCA 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 775
HpyF3I CTNAG 5 cut(s) 429, 528, 597, 621, 675
HpySE526I ACGT 3 cut(s) 144, 319, 702
Hsp92II CATG 2 cut(s) 751, 790
Kzo9I GATC 5 cut(s) 45, 115, 226, 545, 761
LmnI GCTCC 2 cut(s) 418, 664
LweI GCATC 3 cut(s) 169, 445, 474
MaeII ACGT 3 cut(s) 144, 319, 702
MaeIII GTNAC 1 cut(s) 308
MalI GATC 5 cut(s) 47, 117, 228, 547, 763
MboI GATC 5 cut(s) 45, 115, 226, 545, 761
MboII GAAGA 4 cut(s) 32, 35, 38, 771
MflI RGATCY 1 cut(s) 761
MhlI GDGCHC 1 cut(s) 415
MluCI AATT 3 cut(s) 246, 386, 821
MlyI GAGTC 2 cut(s) 162, 500
MnlI CCTC 8 cut(s) 22, 226, 285, 373, 417, 599, 663, 744
MseI TTAA 2 cut(s) 189, 780
MslI CAYNNNNRTG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 194
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 2 cut(s) 419, 775
NcoI CCATGG 1 cut(s) 786
NdeII GATC 5 cut(s) 45, 115, 226, 545, 761
NlaIII CATG 2 cut(s) 751, 790
NmeAIII GCCGAG 1 cut(s) 795
NmuCI GTSAC 1 cut(s) 308
PaeR7I CTCGAG 1 cut(s) 408
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PfeI GAWTC 1 cut(s) 253
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 2 cut(s) 162, 499
PpsI GAGTC 2 cut(s) 162, 499
Ppu21I YACGTR 1 cut(s) 320
Psp124BI GAGCTC 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspXI VCTCGAGB 1 cut(s) 408
PsuI RGATCY 1 cut(s) 761
RseI CAYNNNNRTG 1 cut(s) 281
SacI GAGCTC 1 cut(s) 415
SalI GTCGAC 1 cut(s) 10
SaqAI TTAA 2 cut(s) 189, 780
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 5 cut(s) 45, 115, 226, 545, 761
SchI GAGTC 2 cut(s) 162, 500
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 1 cut(s) 415
SfaNI GCATC 3 cut(s) 169, 445, 474
Sfr274I CTCGAG 1 cut(s) 408
SlaI CTCGAG 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 281
SmlI CTYRAG 2 cut(s) 236, 408
SmoI CTYRAG 2 cut(s) 236, 408
SnaBI TACGTA 1 cut(s) 320
Sse9I AATT 3 cut(s) 246, 386, 821
SsiI CCGC 2 cut(s) 85, 183
SstI GAGCTC 1 cut(s) 415
StyD4I CCNGG 1 cut(s) 192
StyI CCWWGG 2 cut(s) 417, 786
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 3 cut(s) 147, 322, 705
TaqI TCGA 4 cut(s) 11, 48, 225, 409
TasI AATT 3 cut(s) 246, 386, 821
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 2 cut(s) 189, 780
Tru9I TTAA 2 cut(s) 189, 780
TscAI CASTG 3 cut(s) 100, 160, 502
TseFI GTSAC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 299, 322
TspRI CASTG 3 cut(s) 100, 160, 502
XapI RAATTY 2 cut(s) 386, 821
XhoI CTCGAG 1 cut(s) 408
XmiI GTMKAC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.