Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1587892 .. 1588164

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g01850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGCCCTCAAAATTTAACGGTGTTAATGGTCAGGGGTATCAAAATGCTAACGGAATGAAACTTCGGAATGAAACAAAGCAATTAGCACCAAAGGAAATATCATCAATGGTTCTCTCTAAGATGCGTGAAATAGTGGAAATGTATCTTGGATCGGTAGTAAAGAATGCAGTAGTAACTGTCCCAACATATTTTATTGACTCTAACGACATGCTACAAAGGACGCTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0016020 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70

Protein Analysis

77

Amino Acids

8.51

Weight (kDa)

9.45

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	15 - 68	4.6e-14	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	11
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AlwI	GGATC	1 cut(s)	157
ApoI	RAATTY	1 cut(s)	11
BmsI	GCATC	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	149
BspPI	GGATC	1 cut(s)	157
BssMI	GATC	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	20, 178
BstDEI	CTNAG	1 cut(s)	117
BstKTI	GATC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	211
CviAII	CATG	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	1 cut(s)	151
DpnII	GATC	1 cut(s)	149
FaeI	CATG	1 cut(s)	211
FaiI	YATR	2 cut(s)	187, 209
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	1 cut(s)	207
Hin1II	CATG	1 cut(s)	211
HinfI	GANTC	1 cut(s)	197
Hpy188I	TCNGA	1 cut(s)	66
HpyCH4III	ACNGT	2 cut(s)	20, 178
HpyCH4V	TGCA	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	149
LpnPI	CCDG	2 cut(s)	17, 209
LweI	GCATC	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	151
MboI	GATC	1 cut(s)	149
MluCI	AATT	2 cut(s)	11, 80
MlyI	GAGTC	1 cut(s)	191
MnlI	CCTC	1 cut(s)	16
MseI	TTAA	3 cut(s)	15, 24, 229
Mva1269I	GAATGC	1 cut(s)	169
NdeII	GATC	1 cut(s)	149
NlaIII	CATG	1 cut(s)	211
NspI	RCATGY	1 cut(s)	211
PctI	GAATGC	1 cut(s)	169
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
SaqAI	TTAA	3 cut(s)	15, 24, 229
Sau3AI	GATC	1 cut(s)	149
SchI	GAGTC	1 cut(s)	191
SfaNI	GCATC	1 cut(s)	111
SgeI	CNNG	4 cut(s)	44, 137, 158, 220
Sse9I	AATT	2 cut(s)	11, 80
TaaI	ACNGT	2 cut(s)	20, 178
TasI	AATT	2 cut(s)	11, 80
Tru1I	TTAA	3 cut(s)	15, 24, 229
Tru9I	TTAA	3 cut(s)	15, 24, 229
TspDTI	ATGAA	2 cut(s)	71, 84
TspGWI	ACGGA	1 cut(s)	66
XapI	RAATTY	1 cut(s)	11
XceI	RCATGY	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.