Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3386672 .. 3387528

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCAACAAAAGGTGAGGCTCCGGCTATTGGCATTGATTTGGGAACAACTTATTCATGTGTTGGCGTTTGGCAACATGGTCGGATTGAGATCATAGCCAATGATCAAGGAAACAGAACGACACCGTCCTATGTTGTTTTTACTGATACCAGGCGGTTGATCGGTGATGCTGCAAAGAATCAAACGATCTCTTTCTCTTCTGAATGGGAGAGCCCAGAAGATGATGACGGCGGTGACCATGAGGCCAGGGTAGTATCGATGAAGCAAGAAGATTGTGCTGGTGGGTCTTCGTCTTTGTCTTCAACGATTGGAAAGCGCTATGATCTTTGCTTGTTTACTGGGTTTATGCTTTGTGAGATGGACTGGTCCAAACGCCATGATCTTTGCTCAATTGTTTACTGGGTTTATGCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70

Protein Analysis

139

Amino Acids

15.24

Weight (kDa)

4.7

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	9 - 64	1.6e-22	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	154, 231
AfeI	AGCGCT	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	303
AjnI	CCWGG	2 cut(s)	149, 245
Aor51HI	AGCGCT	1 cut(s)	317
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	366
AsuHPI	GGTGA	3 cut(s)	26, 176, 245
AvaII	GGWCC	1 cut(s)	366
BanII	GRGCYC	1 cut(s)	215
BbsI	GAAGAC	2 cut(s)	279, 291
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	1 cut(s)	352
BceAI	ACGGC	1 cut(s)	244
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	2 cut(s)	151, 247
BclI	TGATCA	1 cut(s)	103
BfoI	RGCGCY	1 cut(s)	319
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	2 cut(s)	151, 247
Bme18I	GGWCC	1 cut(s)	366
BmgT120I	GGNCC	1 cut(s)	366
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	2 cut(s)	151, 247
BmrI	ACTGGG	2 cut(s)	348, 409
BmsI	GCATC	1 cut(s)	157
BmuI	ACTGGG	2 cut(s)	348, 409
BpiI	GAAGAC	2 cut(s)	279, 291
Bsa29I	ATCGAT	1 cut(s)	257
BsaBI	GATNNNNATC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	3 cut(s)	343, 368, 404
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	2 cut(s)	151, 247
BseCI	ATCGAT	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	246
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseNI	ACTGG	3 cut(s)	343, 368, 404
BseXI	GCAGC	1 cut(s)	157
BshFI	GGCC	1 cut(s)	245
BshVI	ATCGAT	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	29
BsnI	GGCC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	6 cut(s)	90, 103, 159, 186, 322, 379
BspACI	CCGC	2 cut(s)	154, 231
BspANI	GGCC	1 cut(s)	245
BspDI	ATCGAT	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	21
BsrI	ACTGG	3 cut(s)	343, 368, 404
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	6 cut(s)	90, 103, 159, 186, 322, 379
Bst2UI	CCWGG	2 cut(s)	151, 247
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	202
BstEII	GGTNACC	1 cut(s)	233
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	6 cut(s)	93, 106, 162, 189, 325, 382
BstMBI	GATC	6 cut(s)	90, 103, 159, 186, 322, 379
BstNI	CCWGG	2 cut(s)	151, 247
BstPI	GGTNACC	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	149, 245
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	2 cut(s)	279, 291
Bsu15I	ATCGAT	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	245
BsuTUI	ATCGAT	1 cut(s)	257
CfoI	GCGC	1 cut(s)	318
Cfr13I	GGNCC	1 cut(s)	366
ClaI	ATCGAT	1 cut(s)	257
CviAII	CATG	4 cut(s)	57, 77, 239, 377
CviJI	RGCY	5 cut(s)	20, 26, 98, 213, 245
CviKI_1	RGCY	5 cut(s)	20, 26, 98, 213, 245
DpnI	GATC	6 cut(s)	92, 105, 161, 188, 324, 381
DpnII	GATC	6 cut(s)	90, 103, 159, 186, 322, 379
Eam1104I	CTCTTC	1 cut(s)	202
EarI	CTCTTC	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	366
Eco47III	AGCGCT	1 cut(s)	317
Eco91I	GGTNACC	1 cut(s)	233
EcoO65I	GGTNACC	1 cut(s)	233
EcoRII	CCWGG	2 cut(s)	149, 245
EcoT38I	GRGCYC	1 cut(s)	215
FaeI	CATG	4 cut(s)	60, 80, 242, 380
FaiI	YATR	9 cut(s)	58, 78, 95, 132, 240, 321, 347, 378, 408
FatI	CATG	4 cut(s)	56, 76, 238, 376
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	171
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	171
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	1 cut(s)	171
HaeII	RGCGCY	1 cut(s)	319
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	1 cut(s)	23
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	4 cut(s)	60, 80, 242, 380
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	3 cut(s)	26, 176, 245
Hpy166II	GTNNAC	2 cut(s)	336, 397
Hpy188I	TCNGA	2 cut(s)	84, 202
Hpy8I	GTNNAC	2 cut(s)	336, 397
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4V	TGCA	1 cut(s)	173
Hsp92II	CATG	4 cut(s)	60, 80, 242, 380
HspAI	GCGC	1 cut(s)	316
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	6 cut(s)	90, 103, 159, 186, 322, 379
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	157
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	6 cut(s)	92, 105, 161, 188, 324, 381
MboI	GATC	6 cut(s)	90, 103, 159, 186, 322, 379
MboII	GAAGA	5 cut(s)	189, 230, 279, 281, 291
MfeI	CAATTG	1 cut(s)	390
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	1 cut(s)	390
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	2 cut(s)	10, 235
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	2 cut(s)	151, 247
MunI	CAATTG	1 cut(s)	390
MvaI	CCWGG	2 cut(s)	151, 247
NdeII	GATC	6 cut(s)	90, 103, 159, 186, 322, 379
NlaIII	CATG	4 cut(s)	60, 80, 242, 380
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	178
PflFI	GACNNNGTC	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	172
Psp6I	CCWGG	2 cut(s)	149, 245
PspEI	GGTNACC	1 cut(s)	233
PspGI	CCWGG	2 cut(s)	149, 245
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	366
PsyI	GACNNNGTC	1 cut(s)	124
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	6 cut(s)	90, 103, 159, 186, 322, 379
Sau96I	GGNCC	1 cut(s)	366
ScrFI	CCNGG	2 cut(s)	151, 247
SduI	GDGCHC	1 cut(s)	215
SetI	ASST	1 cut(s)	16
SfaNI	GCATC	1 cut(s)	157
SinI	GGWCC	1 cut(s)	366
Sse9I	AATT	1 cut(s)	390
SsiI	CCGC	2 cut(s)	154, 231
StyD4I	CCNGG	2 cut(s)	149, 245
TaaI	ACNGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	257
TasI	AATT	1 cut(s)	390
TfiI	GAWTC	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	2 cut(s)	45, 275
Tth111I	GACNNNGTC	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.