Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10091715 .. 10097124

Gene Structure 5410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g11540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGTGGAGATTATGCACATGCGCCATGAATTTGATGCGGACACACGGTTGGAAGACAGAATTTTCGGGTCGAGTCGACCCGGTCTGAAAACCGGACTATATTTCCGCCGTCAGGCCGCCCTAGGGCGCGGCACCGGCGTCGTTCGGCGCACCTCGCCCTCCTCGACCTCCGCCCGACCTTCAAGTCCATCAGTTCTTGCTCAGAGCAACGATTTGAAGAGAAGATCAAGAACCCAGTCAAATCGGGTGACCCGATCGGTTCTCCTTTCTCCGGTCGACCCCGGCAGCTCCACCACCCACGTTTTGAAGGTCTCCTCTCGTATATCAATCTCTCAAAAGGAACTAGAATCGGTGATCGGCCGTGGAGACCGACCGCCACTGCCGGCGGCGCGTGAGGCGCGTGCGGCCTCTTCAGAGCAGAGAGAAGCAATGGTTTTAGCTAAAAGGCGTCAGGTTGATGAGAGAGTTAGAAAGATTATTGAGCTGAAAAATAAGGTTTGTTCTGGTAATGACAATAATTTTGTCGTTATCAATCAGAAGGGAATTGATCCCCCATCTCTGGACCTTCTGGCAAGGGCCAGGGATTATTTCTCTGAGAAGAGCAAAGAGGAGAAATATGGAACGGTTGGTTTTGGCTTGTGGAGGGGAGGCTCTGTAATCTTGGGTGCTGGAGCTTTTGAAGTTGCAGCGAGACAATATCTGATAAATGAAGTGAAGAAAACTGTTCAAGGGCGAGCTCAACTTGGTGTTGAAGCTTTTGCTTACACTCTCCTTGTGGTACCCAAGACACTAGCTGAGAATGCTGGCCTTGACACACAAGATGTGATAATTTCTCTCAAGGGAGAGCATGAGCGTGAAACATTGTCGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0032991 GO:0042221 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

291

Amino Acids

31.97

Weight (kDa)

10.02

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	132 - 193	3.6e-06	TCP-1/cpn60 chaperonin family
Cpn60_TCP1	PF00118	217 - 286	2.1e-16	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	183
Acc65I	GGTACC	1 cut(s)	778
AccB1I	GGYRCC	2 cut(s)	131, 778
AccI	GTMKAC	2 cut(s)	76, 276
AccII	CGCG	3 cut(s)	129, 391, 400
AciI	CCGC	8 cut(s)	38, 106, 117, 129, 171, 374, 386, 404
AclWI	GGATC	1 cut(s)	542
AcoI	YGGCCR	1 cut(s)	358
AcsI	RAATTY	2 cut(s)	29, 60
AcuI	CTGAAG	1 cut(s)	396
AcyI	GRCGYC	2 cut(s)	138, 448
AfaI	GTAC	1 cut(s)	780
AfiI	CCNNNNNNNGG	4 cut(s)	112, 123, 271, 559
AgsI	TTSAA	6 cut(s)	183, 217, 307, 680, 728, 752
AjnI	CCWGG	1 cut(s)	578
AluBI	AGCT	7 cut(s)	288, 440, 484, 674, 737, 755, 794
AluI	AGCT	7 cut(s)	288, 440, 484, 674, 737, 755, 794
Alw21I	GWGCWC	1 cut(s)	739
Alw26I	GTCTC	3 cut(s)	316, 360, 685
AlwI	GGATC	1 cut(s)	542
AoxI	GGCC	5 cut(s)	114, 358, 405, 576, 805
ApeKI	GCWGC	2 cut(s)	285, 686
ApoI	RAATTY	2 cut(s)	29, 60
ArsI	GACNNNNNNTTYG	4 cut(s)	47, 79, 503, 535
Asp718I	GGTACC	1 cut(s)	778
AspA2I	CCTAGG	1 cut(s)	121
AspLEI	GCGC	5 cut(s)	24, 129, 150, 391, 400
AspS9I	GGNCC	2 cut(s)	562, 576
AsuC2I	CCSGG	2 cut(s)	81, 282
AsuHPI	GGTGA	2 cut(s)	259, 364
AvaII	GGWCC	1 cut(s)	562
AvrII	CCTAGG	1 cut(s)	121
BanI	GGYRCC	2 cut(s)	131, 778
BanII	GRGCYC	1 cut(s)	739
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	739
BbvI	GCAGC	2 cut(s)	297, 698
BccI	CCATC	2 cut(s)	196, 562
BceAI	ACGGC	2 cut(s)	93, 345
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BciT130I	CCWGG	1 cut(s)	580
BcnI	CCSGG	2 cut(s)	81, 282
BcoDI	GTCTC	3 cut(s)	316, 360, 685
BfaI	CTAG	3 cut(s)	122, 344, 791
BisI	GCNGC	6 cut(s)	117, 130, 286, 387, 405, 687
BlnI	CCTAGG	1 cut(s)	121
BlsI	GCNGC	6 cut(s)	118, 131, 287, 388, 406, 688
Bme1390I	CCNGG	3 cut(s)	81, 282, 580
Bme18I	GGWCC	1 cut(s)	562
BmgT120I	GGNCC	2 cut(s)	562, 576
BmiI	GGNNCC	2 cut(s)	133, 780
BmrFI	CCNGG	3 cut(s)	81, 282, 580
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	1 cut(s)	25
BmuI	ACTGGG	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	690
BpuEI	CTTGAG	1 cut(s)	821
BpuMI	CCSGG	2 cut(s)	81, 282
BsaHI	GRCGYC	2 cut(s)	138, 448
BsaI	GGTCTC	2 cut(s)	316, 360
BsaJI	CCNNGG	4 cut(s)	121, 280, 361, 579
BsaWI	WCCGGW	2 cut(s)	92, 271
BsaXI	ACNNNNNCTCC	2 cut(s)	639, 669
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 123, 271, 559
Bse118I	RCCGGY	2 cut(s)	134, 382
Bse1I	ACTGG	1 cut(s)	235
Bse3DI	GCAATG	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	580
BseDI	CCNNGG	4 cut(s)	121, 280, 361, 579
BseLI	CCNNNNNNNGG	4 cut(s)	112, 123, 271, 559
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	3 cut(s)	215, 585, 786
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	3 cut(s)	151, 304, 623
BseX3I	CGGCCG	1 cut(s)	358
BseXI	GCAGC	2 cut(s)	297, 698
Bsh1236I	CGCG	3 cut(s)	129, 391, 400
Bsh1285I	CGRYCG	4 cut(s)	257, 276, 361, 374
BshFI	GGCC	5 cut(s)	116, 360, 407, 578, 807
BshNI	GGYRCC	2 cut(s)	131, 778
BsiEI	CGRYCG	4 cut(s)	257, 276, 361, 374
BsiHKAI	GWGCWC	1 cut(s)	739
BsiSI	CCGG	6 cut(s)	81, 93, 135, 272, 282, 383
BslI	CCNNNNNNNGG	4 cut(s)	112, 123, 271, 559
BsmAI	GTCTC	3 cut(s)	316, 360, 685
BsmI	GAATGC	1 cut(s)	805
BsnI	GGCC	5 cut(s)	116, 360, 407, 578, 807
Bso31I	GGTCTC	2 cut(s)	316, 360
Bsp1286I	GDGCHC	1 cut(s)	739
Bsp143I	GATC	4 cut(s)	224, 254, 354, 547
BspACI	CCGC	8 cut(s)	38, 106, 117, 129, 171, 374, 386, 404
BspANI	GGCC	5 cut(s)	116, 360, 407, 578, 807
BspCNI	CTCAG	3 cut(s)	214, 586, 787
BspFNI	CGCG	3 cut(s)	129, 391, 400
BspLI	GGNNCC	2 cut(s)	133, 780
BspPI	GGATC	1 cut(s)	542
BspQI	GCTCTTC	1 cut(s)	593
BspT107I	GGYRCC	2 cut(s)	131, 778
BspTNI	GGTCTC	2 cut(s)	316, 360
BsrDI	GCAATG	1 cut(s)	435
BsrFI	RCCGGY	2 cut(s)	134, 382
BsrI	ACTGG	1 cut(s)	235
BssAI	RCCGGY	2 cut(s)	134, 382
BssECI	CCNNGG	4 cut(s)	121, 280, 361, 579
BssMI	GATC	4 cut(s)	224, 254, 354, 547
BssNI	GRCGYC	2 cut(s)	138, 448
BssT1I	CCWWGG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	580
Bst4CI	ACNGT	3 cut(s)	48, 625, 724
Bst6I	CTCTTC	3 cut(s)	212, 415, 593
BstACI	GRCGYC	2 cut(s)	138, 448
BstC8I	GCNNGC	4 cut(s)	384, 402, 735, 805
BstDEI	CTNAG	3 cut(s)	201, 594, 795
BstDSI	CCRYGG	1 cut(s)	361
BstEII	GGTNACC	1 cut(s)	247
BstFNI	CGCG	3 cut(s)	129, 391, 400
BstHHI	GCGC	5 cut(s)	24, 129, 150, 391, 400
BstKTI	GATC	4 cut(s)	227, 257, 357, 550
BstMAI	GTCTC	3 cut(s)	316, 360, 685
BstMBI	GATC	4 cut(s)	224, 254, 354, 547
BstMCI	CGRYCG	4 cut(s)	257, 276, 361, 374
BstMWI	GCNNNNNNNGC	7 cut(s)	135, 154, 388, 395, 397, 404, 800
BstNI	CCWGG	1 cut(s)	580
BstNSI	RCATGY	1 cut(s)	22
BstPI	GGTNACC	1 cut(s)	247
BstSCI	CCNGG	3 cut(s)	79, 280, 578
BstUI	CGCG	3 cut(s)	129, 391, 400
BstV1I	GCAGC	2 cut(s)	297, 698
BstV2I	GAAGAC	1 cut(s)	60
BstZI	CGGCCG	1 cut(s)	358
BsuRI	GGCC	5 cut(s)	116, 360, 407, 578, 807
BtgI	CCRYGG	1 cut(s)	361
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	1 cut(s)	377
Cac8I	GCNNGC	4 cut(s)	384, 402, 735, 805
CfoI	GCGC	5 cut(s)	24, 129, 150, 391, 400
Cfr10I	RCCGGY	2 cut(s)	134, 382
Cfr13I	GGNCC	2 cut(s)	562, 576
CseI	GACGC	2 cut(s)	127, 437
Csp6I	GTAC	1 cut(s)	779
CviAII	CATG	3 cut(s)	19, 26, 848
CviQI	GTAC	1 cut(s)	779
DdeI	CTNAG	3 cut(s)	201, 594, 795
DpnI	GATC	4 cut(s)	226, 256, 356, 549
DpnII	GATC	4 cut(s)	224, 254, 354, 547
DrdI	GACNNNNNNGTC	1 cut(s)	183
DseDI	GACNNNNNNGTC	1 cut(s)	183
EaeI	YGGCCR	1 cut(s)	358
EagI	CGGCCG	1 cut(s)	358
Eam1104I	CTCTTC	3 cut(s)	212, 415, 593
EarI	CTCTTC	3 cut(s)	212, 415, 593
EciI	GGCGGA	2 cut(s)	95, 160
Ecl136II	GAGCTC	1 cut(s)	737
EclXI	CGGCCG	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	739
Eco31I	GGTCTC	2 cut(s)	316, 360
Eco47I	GGWCC	1 cut(s)	562
Eco52I	CGGCCG	1 cut(s)	358
Eco53kI	GAGCTC	1 cut(s)	737
Eco57I	CTGAAG	1 cut(s)	396
Eco91I	GGTNACC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	737
EcoO65I	GGTNACC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	578
EcoT14I	CCWWGG	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	739
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	3 cut(s)	22, 29, 851
FaiI	YATR	7 cut(s)	14, 20, 27, 100, 323, 618, 849
FatI	CATG	3 cut(s)	18, 25, 847
FblI	GTMKAC	2 cut(s)	76, 276
Fnu4HI	GCNGC	6 cut(s)	117, 130, 286, 387, 405, 687
FriOI	GRGCYC	1 cut(s)	739
Fsp4HI	GCNGC	6 cut(s)	117, 130, 286, 387, 405, 687
FspBI	CTAG	3 cut(s)	122, 344, 791
GlaI	GCGC	5 cut(s)	23, 128, 149, 390, 399
GluI	GCNGC	6 cut(s)	117, 130, 286, 387, 405, 687
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	5 cut(s)	116, 360, 407, 578, 807
HapII	CCGG	6 cut(s)	81, 93, 135, 272, 282, 383
HgaI	GACGC	2 cut(s)	127, 437
HhaI	GCGC	5 cut(s)	24, 129, 150, 391, 400
Hin1I	GRCGYC	2 cut(s)	138, 448
Hin1II	CATG	3 cut(s)	22, 29, 851
Hin6I	GCGC	5 cut(s)	22, 127, 148, 389, 398
HinP1I	GCGC	5 cut(s)	22, 127, 148, 389, 398
HincII	GTYRAC	2 cut(s)	77, 277
HindII	GTYRAC	2 cut(s)	77, 277
HindIII	AAGCTT	1 cut(s)	753
HinfI	GANTC	2 cut(s)	73, 347
HpaII	CCGG	6 cut(s)	81, 93, 135, 272, 282, 383
HphI	GGTGA	2 cut(s)	259, 364
Hpy166II	GTNNAC	2 cut(s)	77, 277
Hpy188I	TCNGA	7 cut(s)	87, 204, 415, 537, 595, 702, 868
Hpy188III	TCNNGA	2 cut(s)	228, 560
Hpy8I	GTNNAC	2 cut(s)	77, 277
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	4 cut(s)	189, 301, 532, 575
HpyCH4III	ACNGT	3 cut(s)	48, 625, 724
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	2 cut(s)	16, 686
HpyF10VI	GCNNNNNNNGC	7 cut(s)	135, 154, 388, 395, 397, 404, 800
HpyF3I	CTNAG	3 cut(s)	201, 594, 795
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	2 cut(s)	138, 448
Hsp92II	CATG	3 cut(s)	22, 29, 851
HspAI	GCGC	5 cut(s)	22, 127, 148, 389, 398
KpnI	GGTACC	1 cut(s)	782
KroI	GCCGGC	1 cut(s)	382
KroNI	GCCGGC	1 cut(s)	384
Kzo9I	GATC	4 cut(s)	224, 254, 354, 547
LguI	GCTCTTC	1 cut(s)	593
LmnI	GCTCC	2 cut(s)	293, 671
Lsp1109I	GCAGC	2 cut(s)	297, 698
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	3 cut(s)	122, 344, 791
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	4 cut(s)	226, 256, 356, 549
MboI	GATC	4 cut(s)	224, 254, 354, 547
MboII	GAAGA	6 cut(s)	65, 229, 234, 402, 610, 727
MhlI	GDGCHC	1 cut(s)	739
MluCI	AATT	5 cut(s)	29, 60, 517, 543, 828
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	2 cut(s)	30, 846
MroNI	GCCGGC	1 cut(s)	382
MslI	CAYNNNNRTG	1 cut(s)	852
MspI	CCGG	6 cut(s)	81, 93, 135, 272, 282, 383
MspR9I	CCNGG	3 cut(s)	81, 282, 580
Mva1269I	GAATGC	1 cut(s)	805
MvaI	CCWGG	1 cut(s)	580
MvnI	CGCG	3 cut(s)	129, 391, 400
MwoI	GCNNNNNNNGC	7 cut(s)	135, 154, 388, 395, 397, 404, 800
NaeI	GCCGGC	1 cut(s)	384
NciI	CCSGG	2 cut(s)	81, 282
NdeII	GATC	4 cut(s)	224, 254, 354, 547
NgoMIV	GCCGGC	1 cut(s)	382
NlaIII	CATG	3 cut(s)	22, 29, 851
NlaIV	GGNNCC	2 cut(s)	133, 780
NmuCI	GTSAC	1 cut(s)	247
NspI	RCATGY	1 cut(s)	22
PciSI	GCTCTTC	1 cut(s)	593
PcsI	WCGNNNNNNNCGW	2 cut(s)	161, 250
PctI	GAATGC	1 cut(s)	805
PdiI	GCCGGC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	347
PflFI	GACNNNGTC	1 cut(s)	81
PkrI	GCNGC	6 cut(s)	118, 131, 287, 388, 406, 688
Ple19I	CGATCG	1 cut(s)	257
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
Psp124BI	GAGCTC	1 cut(s)	739
Psp6I	CCWGG	1 cut(s)	578
PspEI	GGTNACC	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	578
PspN4I	GGNNCC	2 cut(s)	133, 780
PspPI	GGNCC	2 cut(s)	562, 576
PsyI	GACNNNGTC	1 cut(s)	81
PvuI	CGATCG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	780
RsaNI	GTAC	1 cut(s)	779
RseI	CAYNNNNRTG	1 cut(s)	852
SacI	GAGCTC	1 cut(s)	739
SalI	GTCGAC	2 cut(s)	75, 275
SapI	GCTCTTC	1 cut(s)	593
SatI	GCNGC	6 cut(s)	117, 130, 286, 387, 405, 687
Sau3AI	GATC	4 cut(s)	224, 254, 354, 547
Sau96I	GGNCC	2 cut(s)	562, 576
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	3 cut(s)	81, 282, 580
SduI	GDGCHC	1 cut(s)	739
SfaNI	GCATC	1 cut(s)	25
SgrAI	CRCCGGYG	1 cut(s)	134
SinI	GGWCC	1 cut(s)	562
SmiMI	CAYNNNNRTG	1 cut(s)	852
SmlI	CTYRAG	1 cut(s)	836
SmoI	CTYRAG	1 cut(s)	836
Sse9I	AATT	5 cut(s)	29, 60, 517, 543, 828
SsiI	CCGC	8 cut(s)	38, 106, 117, 129, 171, 374, 386, 404
SspMI	CTAG	3 cut(s)	122, 344, 791
SstI	GAGCTC	1 cut(s)	739
StyD4I	CCNGG	3 cut(s)	79, 280, 578
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	3 cut(s)	48, 625, 724
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	4 cut(s)	71, 76, 164, 276
TaqII	GACCGA	1 cut(s)	384
TasI	AATT	5 cut(s)	29, 60, 517, 543, 828
TauI	GCSGC	4 cut(s)	119, 132, 389, 407
TfiI	GAWTC	1 cut(s)	347
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	2 cut(s)	285, 686
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	2 cut(s)	42, 723
TspRI	CASTG	1 cut(s)	384
Tth111I	GACNNNGTC	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	562
XapI	RAATTY	2 cut(s)	29, 60
XceI	RCATGY	1 cut(s)	22
XmaJI	CCTAGG	1 cut(s)	121
XmiI	GTMKAC	2 cut(s)	76, 276
XspI	CTAG	3 cut(s)	122, 344, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.