FvH4_2g15132
MYB Family

DDE superfamily endonuclease

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
N/A
Physical Location & Seq
Forward (+)
13270888 .. 13273192
2305 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15132.t1

Sequence Viewer

Length: 579 bp
ATGGAAGTTGTGGAAAGACCTAATTGGCAAGGAAACTGGGTTAGGTGTTTCAAAGAGGGGGAAAAAAAAAGAATGAAAGAAGCTGAATTACAAGCTCAAGTGGAAAAGAAATCTAAGGGACCTATTGATTTACGCAAGAAGAAGGTGGGAGGTTTTGCAAAGTTGTCCGAACAAATAGAACGTTTTGTTGATGTAGTTGAGAAGGGGAATGCTGGAAAATCAAGTAATGTGAACAACACAGAAGGGTGTACTATTGCTCAAGACAAGTACGAGTTTGTGGGTTCTAAAAGGATGAATGTTTTTGAGATATTGGGAATGTTCTTACACATTATAGGACATGGAGTGGTGAACATATTAACACAAGAAGAATTTCAGCATTTTGGGGAGACTGTGAGTAGGTGTGGTGGTTCAACAAGCCGTAAAGATGTATTCAACTACGTGCATTCTTCTCTTAGAAGCGTCGTTGAACGCACTTTTGGAGCCTGGAAGAAAAAATGGAAGATTTTAAGGGATATACCTAATTTTCCATTTGACAAGCAACAAGCAAGTGAAGATAGTCATTACAACTATGACACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

193

Amino Acids

22.11

Weight (kDa)

9.17

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 86 - 134 7.4e-10 Domain of unknown function (DUF8040)
DDE_Tnp_4 PF13359 135 - 170 2.4e-06 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 181
AcsI RAATTY 1 cut(s) 368
AfaI GTAC 2 cut(s) 250, 269
AgsI TTSAA 4 cut(s) 52, 411, 433, 467
AjnI CCWGG 1 cut(s) 482
AjuI GAANNNNNNNTTGG 2 cut(s) 459, 491
AluBI AGCT 2 cut(s) 83, 95
AluI AGCT 2 cut(s) 83, 95
Alw26I GTCTC 1 cut(s) 380
ApoI RAATTY 1 cut(s) 368
Asp700I GAANNNNTTC 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 358
AvaII GGWCC 1 cut(s) 119
BarI GAAGNNNNNNTAC 2 cut(s) 72, 104
BceAI ACGGC 1 cut(s) 402
BciT130I CCWGG 1 cut(s) 484
BcoDI GTCTC 1 cut(s) 380
Bme1390I CCNGG 1 cut(s) 484
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 119
BmiI GGNNCC 2 cut(s) 120, 481
BmrFI CCNGG 1 cut(s) 484
BmrI ACTGGG 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 46
BpuEI CTTGAG 2 cut(s) 81, 243
BsaAI YACGTR 1 cut(s) 439
Bse1I ACTGG 1 cut(s) 41
BseBI CCWGG 1 cut(s) 484
BseGI GGATG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 41
BslFI GGGAC 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 132
BsmI GAATGC 2 cut(s) 214, 442
BspLI GGNNCC 2 cut(s) 120, 481
BsrI ACTGG 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 484
Bst4CI ACNGT 1 cut(s) 391
BstBAI YACGTR 1 cut(s) 439
BstDEI CTNAG 2 cut(s) 114, 452
BstF5I GGATG 1 cut(s) 297
BstMAI GTCTC 1 cut(s) 380
BstNI CCWGG 1 cut(s) 484
BstSCI CCNGG 1 cut(s) 482
BtsCI GGATG 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 119
CseI GACGC 1 cut(s) 448
Csp6I GTAC 2 cut(s) 249, 268
CviAII CATG 1 cut(s) 338
CviJI RGCY 4 cut(s) 83, 95, 417, 482
CviKI_1 RGCY 4 cut(s) 83, 95, 417, 482
CviQI GTAC 2 cut(s) 249, 268
DdeI CTNAG 2 cut(s) 114, 452
Eco47I GGWCC 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 482
FaeI CATG 1 cut(s) 341
FaiI YATR 5 cut(s) 332, 339, 353, 515, 570
FaqI GGGAC 1 cut(s) 132
FatI CATG 1 cut(s) 337
FokI GGATG 1 cut(s) 304
HgaI GACGC 1 cut(s) 448
Hin1II CATG 1 cut(s) 341
HphI GGTGA 1 cut(s) 358
Hpy166II GTNNAC 3 cut(s) 232, 249, 349
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 3 cut(s) 232, 249, 349
Hpy99I CGWCG 1 cut(s) 464
HpyAV CCTTC 3 cut(s) 136, 196, 236
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4IV ACGT 2 cut(s) 181, 438
HpyCH4V TGCA 2 cut(s) 158, 442
HpyF3I CTNAG 2 cut(s) 114, 452
HpySE526I ACGT 2 cut(s) 181, 438
Hsp92II CATG 1 cut(s) 341
LmnI GCTCC 1 cut(s) 479
LpnPI CCDG 4 cut(s) 22, 198, 469, 496
MaeII ACGT 2 cut(s) 181, 438
MboII GAAGA 6 cut(s) 151, 377, 438, 499, 511, 563
MluCI AATT 4 cut(s) 22, 86, 368, 520
MnlI CCTC 2 cut(s) 49, 143
MroXI GAANNNNTTC 1 cut(s) 369
MseI TTAA 3 cut(s) 356, 506, 577
MspR9I CCNGG 1 cut(s) 484
Mva1269I GAATGC 2 cut(s) 214, 442
MvaI CCWGG 1 cut(s) 484
NlaIII CATG 1 cut(s) 341
NlaIV GGNNCC 2 cut(s) 120, 481
PctI GAATGC 2 cut(s) 214, 442
PdmI GAANNNNTTC 1 cut(s) 369
Ppu21I YACGTR 1 cut(s) 439
PpuMI RGGWCCY 1 cut(s) 119
Psp1406I AACGTT 1 cut(s) 181
Psp5II RGGWCCY 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 482
PspGI CCWGG 1 cut(s) 482
PspN4I GGNNCC 2 cut(s) 120, 481
PspPI GGNCC 1 cut(s) 119
PspPPI RGGWCCY 1 cut(s) 119
RsaI GTAC 2 cut(s) 250, 269
RsaNI GTAC 2 cut(s) 249, 268
SaqAI TTAA 3 cut(s) 356, 506, 577
Sau96I GGNCC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 484
SinI GGWCC 1 cut(s) 119
SmlI CTYRAG 2 cut(s) 96, 258
SmoI CTYRAG 2 cut(s) 96, 258
Sse9I AATT 4 cut(s) 22, 86, 368, 520
StyD4I CCNGG 1 cut(s) 482
TaaI ACNGT 1 cut(s) 391
TaiI ACGT 2 cut(s) 184, 441
TasI AATT 4 cut(s) 22, 86, 368, 520
TatI WGTACW 1 cut(s) 248
Tru1I TTAA 3 cut(s) 356, 506, 577
Tru9I TTAA 3 cut(s) 356, 506, 577
TspDTI ATGAA 2 cut(s) 89, 308
VpaK11BI GGWCC 1 cut(s) 119
XapI RAATTY 1 cut(s) 368
XmnI GAANNNNTTC 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.