Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

15990226 .. 15991304

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18711.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCAGATATCCTAGGTGTGCAGTTGGTGGAGAAACATGAGAAATATCTTGGTATTCCTATTTTGGTTGGAAAATCCAAGTCAGATAATTTATCTAAGAAGCGCACAGAATTTGATTCAGGAACTTCACCAACCTTGTGCCCAATTCTGTGGGGTAGTACGGAGTTGAAGAAGGAAGATTACCCAAAGCCATCTATTTTCCTCATTGTAACTCTTAGGAGGCAGGGCTTGGGTCTTGTGCTTCTTATGCTTGGAGGAGTATTCTACAAGGCAGGGATAATCTGCAAGCTGGCATTTGTAAACATATTGATAGTCAACAATTGCAACTACACAGTCTGGCCTGGAGTTTTCTCCTTTGACGCACTAAACCAGCCGTCATTGTCGACCACCGGCTTCACGCTCAAGAGCGACGCGTCCTTCAACCTCTCCGTCCCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Thaumatin

Protein Analysis

147

Amino Acids

16.03

Weight (kDa)

9.01

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	383
AccII	CGCG	1 cut(s)	413
AcsI	RAATTY	1 cut(s)	110
AfaI	GTAC	1 cut(s)	160
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	2 cut(s)	169, 421
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
AoxI	GGCC	1 cut(s)	338
ApoI	RAATTY	1 cut(s)	110
AspA2I	CCTAGG	1 cut(s)	13
AspLEI	GCGC	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	120
AvrII	CCTAGG	1 cut(s)	13
BaeGI	GKGCMC	1 cut(s)	143
BarI	GAAGNNNNNNTAC	2 cut(s)	164, 196
BccI	CCATC	1 cut(s)	199
BceAI	ACGGC	1 cut(s)	358
BciT130I	CCWGG	1 cut(s)	342
BfaI	CTAG	1 cut(s)	14
BlnI	CCTAGG	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	342
BmrFI	CCNGG	1 cut(s)	342
BpmI	CTGGAG	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	386
BsaJI	CCNNGG	1 cut(s)	13
Bse118I	RCCGGY	1 cut(s)	389
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	13
BseRI	GAGGAG	1 cut(s)	270
BseSI	GKGCMC	1 cut(s)	143
BsgI	GTGCAG	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	413
BshFI	GGCC	1 cut(s)	340
BsiSI	CCGG	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	340
Bsp1286I	GDGCHC	1 cut(s)	143
BspANI	GGCC	1 cut(s)	340
BspFNI	CGCG	1 cut(s)	413
BsrFI	RCCGGY	1 cut(s)	389
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	334
BstC8I	GCNNGC	2 cut(s)	287, 291
BstDEI	CTNAG	2 cut(s)	96, 215
BstFNI	CGCG	1 cut(s)	413
BstHHI	GCGC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	340
BstSLI	GKGCMC	1 cut(s)	143
BstUI	CGCG	1 cut(s)	413
BstXI	CCANNNNNNTGG	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	340
Cac8I	GCNNGC	2 cut(s)	287, 291
CfoI	GCGC	1 cut(s)	105
Cfr10I	RCCGGY	1 cut(s)	389
CseI	GACGC	3 cut(s)	368, 402, 419
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	6 cut(s)	190, 228, 289, 340, 373, 393
CviKI_1	RGCY	6 cut(s)	190, 228, 289, 340, 373, 393
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	2 cut(s)	96, 215
Eco130I	CCWWGG	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	340
EcoRV	GATATC	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	1 cut(s)	41
FaiI	YATR	3 cut(s)	39, 248, 305
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	1 cut(s)	37
FblI	GTMKAC	1 cut(s)	383
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	1 cut(s)	104
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	340
HapII	CCGG	1 cut(s)	390
HgaI	GACGC	3 cut(s)	368, 402, 419
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	1 cut(s)	41
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	2 cut(s)	316, 384
HindII	GTYRAC	2 cut(s)	316, 384
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	1 cut(s)	390
HphI	GGTGA	1 cut(s)	120
Hpy166II	GTNNAC	3 cut(s)	301, 316, 384
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	2 cut(s)	120, 403
Hpy8I	GTNNAC	3 cut(s)	301, 316, 384
Hpy99I	CGWCG	1 cut(s)	413
HpyAV	CCTTC	2 cut(s)	166, 427
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4V	TGCA	3 cut(s)	22, 285, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	2 cut(s)	96, 215
Hsp92II	CATG	1 cut(s)	41
HspAI	GCGC	1 cut(s)	103
LpnPI	CCDG	9 cut(s)	105, 209, 258, 275, 322, 327, 354, 383, 403
MaeI	CTAG	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	208
MboII	GAAGA	2 cut(s)	181, 188
MfeI	CAATTG	1 cut(s)	319
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	4 cut(s)	88, 110, 144, 319
MluI	ACGCGT	1 cut(s)	411
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	4 cut(s)	212, 213, 248, 434
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	1 cut(s)	342
MunI	CAATTG	1 cut(s)	319
MvaI	CCWGG	1 cut(s)	342
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	1 cut(s)	247
NlaIII	CATG	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
SalI	GTCGAC	1 cut(s)	382
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	4 cut(s)	19, 137, 291, 426
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	4 cut(s)	88, 110, 144, 319
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	1 cut(s)	334
TaqI	TCGA	1 cut(s)	383
TasI	AATT	4 cut(s)	88, 110, 144, 319
TfiI	GAWTC	1 cut(s)	116
TspGWI	ACGGA	2 cut(s)	176, 418
XapI	RAATTY	1 cut(s)	110
XmaJI	CCTAGG	1 cut(s)	13
XmiI	GTMKAC	1 cut(s)	383
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.