FvH4_2g19764
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
N/A
Physical Location & Seq
Reverse (-)
16710249 .. 16713384
3136 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19764.t1

Sequence Viewer

Length: 564 bp
ATGGAAGACGATTGGGATCTCACCGTTGTTGTCAGAGGCTGCTCCACCGCCACTACCACCACCACAAAGCCAACCACCTCTTTCATCTTAGACCATCATCACCACCACCACTTCCACTCTAGCCCTCTCCTCTCTTCTTCATTTGATCCCATTAAACCCACAAGTGCAATTGAGGAACTGCATGATCTTTACAAGCCATTCTTCCCCAAATCTCATCACAAGATTCACACCCCATCTCTTCTTTCTCCTCCCCCACAAATCACTCCACAGCCTAATTTCTCCTCCCATCAACAACTCCACAAACACCAGCCTAAGCTTTCTGCCACTAATACCACACAACGCTCCAAAATGAGGCTTATGATGGTTGGGCAAGAGGAGGGAGAGGGAGTGAAGGGATTTGGACCGGTAAGGAGGAAGAGGGGAGCTGGGTTTTGTGAGCGGAGGAAGAGGGTAAGAGGAGGAAGAGGGAGTGAAGGGCGACCGGTAAGGAGGAAGAAGGGAGCTGGGTTTTGTGAGCGGAGGAAGAGGGCAAGAGGAGGAAGAGGGGAGCTGGATTTAGACTGA

Protein Analysis

188

Amino Acids

21.14

Weight (kDa)

10.39

Isoelectric Point (pI)

56.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 439, 517
AciI CCGC 3 cut(s) 48, 439, 517
AclWI GGATC 2 cut(s) 24, 140
AfiI CCNNNNNNNGG 1 cut(s) 351
AgeI ACCGGT 2 cut(s) 403, 481
AluBI AGCT 4 cut(s) 316, 425, 503, 550
AluI AGCT 4 cut(s) 316, 425, 503, 550
AlwI GGATC 2 cut(s) 24, 140
AlwNI CAGNNNCTG 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 39
AsiGI ACCGGT 2 cut(s) 403, 481
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 2 cut(s) 13, 92
AvaII GGWCC 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 26
BccI CCATC 4 cut(s) 102, 241, 294, 355
BfaI CTAG 1 cut(s) 120
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 401
BpiI GAAGAC 1 cut(s) 12
Bpu10I CCTNAGC 1 cut(s) 312
BsaBI GATNNNNATC 1 cut(s) 15
BsaWI WCCGGW 2 cut(s) 403, 481
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse118I RCCGGY 2 cut(s) 403, 481
Bse8I GATNNNNATC 1 cut(s) 15
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 1 cut(s) 351
BseRI GAGGAG 6 cut(s) 119, 237, 271, 389, 471, 549
BseXI GCAGC 1 cut(s) 26
BseYI CCCAGC 2 cut(s) 425, 503
Bsh1285I CGRYCG 1 cut(s) 482
BshTI ACCGGT 2 cut(s) 403, 481
BsiEI CGRYCG 1 cut(s) 482
BsiSI CCGG 2 cut(s) 404, 482
BslI CCNNNNNNNGG 1 cut(s) 351
Bsp143I GATC 3 cut(s) 16, 145, 184
BspACI CCGC 3 cut(s) 48, 439, 517
BspPI GGATC 2 cut(s) 24, 140
BsrBI CCGCTC 2 cut(s) 439, 517
BsrFI RCCGGY 2 cut(s) 403, 481
BssAI RCCGGY 2 cut(s) 403, 481
BssMI GATC 3 cut(s) 16, 145, 184
Bst4CI ACNGT 1 cut(s) 25
Bst6I CTCTTC 7 cut(s) 139, 243, 410, 440, 457, 518, 535
BstDEI CTNAG 2 cut(s) 88, 312
BstKTI GATC 3 cut(s) 19, 148, 187
BstMBI GATC 3 cut(s) 16, 145, 184
BstMCI CGRYCG 1 cut(s) 482
BstV1I GCAGC 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
CaiI CAGNNNCTG 1 cut(s) 39
Cfr10I RCCGGY 2 cut(s) 403, 481
Cfr13I GGNCC 1 cut(s) 401
CspAI ACCGGT 2 cut(s) 403, 481
CviAII CATG 1 cut(s) 182
DdeI CTNAG 2 cut(s) 88, 312
DpnI GATC 3 cut(s) 18, 147, 186
DpnII GATC 3 cut(s) 16, 145, 184
Eam1104I CTCTTC 7 cut(s) 139, 243, 410, 440, 457, 518, 535
EarI CTCTTC 7 cut(s) 139, 243, 410, 440, 457, 518, 535
Eco47I GGWCC 1 cut(s) 401
FaeI CATG 1 cut(s) 185
FaiI YATR 2 cut(s) 183, 359
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FatI CATG 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 1 cut(s) 120
GluI GCNGC 1 cut(s) 40
GsaI CCCAGC 2 cut(s) 429, 507
HapII CCGG 2 cut(s) 404, 482
Hin1II CATG 1 cut(s) 185
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 1 cut(s) 223
HpaII CCGG 2 cut(s) 404, 482
HphI GGTGA 2 cut(s) 13, 92
Hpy188I TCNGA 1 cut(s) 35
HpyAV CCTTC 3 cut(s) 385, 467, 490
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4V TGCA 2 cut(s) 167, 181
HpyF3I CTNAG 2 cut(s) 88, 312
Hsp92II CATG 1 cut(s) 185
Kzo9I GATC 3 cut(s) 16, 145, 184
LmnI GCTCC 5 cut(s) 47, 347, 422, 500, 547
LpnPI CCDG 6 cut(s) 320, 411, 417, 489, 495, 536
Lsp1109I GCAGC 1 cut(s) 26
MaeI CTAG 1 cut(s) 120
MalI GATC 3 cut(s) 18, 147, 186
MbiI CCGCTC 2 cut(s) 439, 517
MboI GATC 3 cut(s) 16, 145, 184
MfeI CAATTG 1 cut(s) 168
MflI RGATCY 1 cut(s) 16
MluCI AATT 2 cut(s) 168, 274
MseI TTAA 1 cut(s) 153
MspI CCGG 2 cut(s) 404, 482
MunI CAATTG 1 cut(s) 168
NdeII GATC 3 cut(s) 16, 145, 184
NlaIII CATG 1 cut(s) 185
PfeI GAWTC 1 cut(s) 223
PinAI ACCGGT 2 cut(s) 403, 481
PkrI GCNGC 1 cut(s) 41
PspFI CCCAGC 2 cut(s) 425, 503
PspPI GGNCC 1 cut(s) 401
PstNI CAGNNNCTG 1 cut(s) 39
PsuI RGATCY 1 cut(s) 16
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 3 cut(s) 16, 145, 184
Sau96I GGNCC 1 cut(s) 401
SetI ASST 5 cut(s) 80, 318, 427, 505, 552
SinI GGWCC 1 cut(s) 401
Sse9I AATT 2 cut(s) 168, 274
SsiI CCGC 3 cut(s) 48, 439, 517
SspMI CTAG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 25
TasI AATT 2 cut(s) 168, 274
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseI GCWGC 1 cut(s) 39
TspDTI ATGAA 2 cut(s) 73, 129
VpaK11BI GGWCC 1 cut(s) 401
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.