FvH4_2g23201

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
N/A
Physical Location & Seq
Reverse (-)
19017584 .. 19018642
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23201.t1

Sequence Viewer

Length: 1059 bp
ATGTGCAAAACGGGTGCTGTAGTTACATATCACGTTGATCATGACTTTTCTGATGTATTTGGTCCTGTACCAGTCCATACTCCAGTAGATAACACTGGCCTTACTTCCTATGATCCCGTTGTCATTGACAACCGATCACATTCTTTCATTGATCCTTGCCATTCACTGAAGCCCAACAAACTCACCATTTGGGACACAGAAGATTCAGTAGGGTGTCTCCATGAAGAAACCATCAAAGAATCTCAGGAACCTTTTGTTTGTGAGAATGTTGAGGAGAATTTCTTGAGGAGTGAGAGTGTAGGCATCGAAGATTTTGAGGTTTTGAAGATTGTTGGGAAGGGTGCATTTGCAAAAGTATATCAGGTGAGGAAGAAGGGGACCTCGGAAATATATGCGATGAAGGTTATGCGAAAGGACAAGATCATGAAGGATGATTATACGGCTGAAAACATTAAATTTGAGAGGGATATATTAACAAAAGTTGATCATCCATTCATTATCAAGCTTAGATACTCATTCCAAACCAACAAGAGACTCTATCTTGTAATGGATTTTGTGAATGGAGGTCAGCTTTTCTTTCAGCTCCACCAACATGGCCTTTTCTTGGAGGAGCTAGCACGAATATATGCCGCTGAGATTGTTTCTGCGGTATCTCACCTTCATTCCAATGGCATAATGCATAGAGATCTTAAGCCTGAAAATATCCTATTGGATGCAGATGGCCATGTCATTTTGACAGACTTTGGGCTTGCAAAAAATTTCGATGAAAACACAAGGTCTTATTCTTTTTGTGGAACTCTACAATACATGGCACCGGAAATAGTTCAGGGAAGAGGTCATGATAAGGCAGCAGATTGGTGGAGTGTGGGAGTTCTATTGTATGTGATGCTCACCGGAAAGCTTCCTTTTATCGGGAACCGTTGGGAATATCAAGAGAAGATAGTAAACAAGAAAATCAAGTTGCCTAGTTTTTTGACAAGTGAAGCACATTCTCTATTGAAAGGGCTGTTAGATAAAGACGCATGGAAGCGCCTAGGTTGTGGACCTTTGGGGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008285 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0035556 GO:0036211 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045727 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:2000112
KEGG Pathways
Metabolic & Signaling
ko01521 ko01522 ko04012 ko04066 ko04140 ko04150 ko04151 ko04152 ko04211 ko04212 ko04213 ko04350 ko04371 ko04666 ko04714 ko04910 ko04931 ko05165 ko05200 ko05205 ko05210 ko05212 ko05221 ko05224 ko05225 ko05226 ko05231 map01521 map01522 map04012 map04066 map04140 map04150 map04151 map04152 map04211 map04212 map04213 map04350 map04371 map04666 map04714 map04910 map04931 map05165 map05200 map05205 map05210 map05212 map05221 map05224 map05225 map05226 map05231
Pfam Domains
Protein Families
Pkinase Pkinase_C

Protein Analysis

353

Amino Acids

40.03

Weight (kDa)

6.11

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 105 - 347 5.9e-73 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 107 - 342 2.2e-33 Protein tyrosine and serine/threonine kinase
ABC1 PF03109 178 - 261 3e-08 ABC1 atypical kinase-like domain
Kinase-like PF14531 202 - 340 8.8e-09 Kinase-like
Pkinase_fungal PF17667 213 - 296 1.7e-07 Fungal protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 811
AciI CCGC 2 cut(s) 630, 647
AclWI GGATC 2 cut(s) 107, 146
AcoI YGGCCR 1 cut(s) 721
AcsI RAATTY 3 cut(s) 277, 455, 757
AcuI CTGAAG 1 cut(s) 188
AfaI GTAC 1 cut(s) 69
AfiI CCNNNNNNNGG 3 cut(s) 604, 911, 1052
AflII CTTAAG 1 cut(s) 689
AgsI TTSAA 2 cut(s) 325, 1000
AluBI AGCT 5 cut(s) 505, 571, 583, 613, 901
AluI AGCT 5 cut(s) 505, 571, 583, 613, 901
Alw26I GTCTC 2 cut(s) 221, 526
AlwI GGATC 2 cut(s) 107, 146
AoxI GGCC 3 cut(s) 97, 595, 721
ApeKI GCWGC 1 cut(s) 848
ApoI RAATTY 3 cut(s) 277, 455, 757
Asp700I GAANNNNTTC 1 cut(s) 822
AspA2I CCTAGG 1 cut(s) 1033
AspLEI GCGC 1 cut(s) 1032
AspS9I GGNCC 3 cut(s) 62, 378, 1043
AsuHPI GGTGA 4 cut(s) 175, 376, 647, 883
AsuNHI GCTAGC 1 cut(s) 613
AvaII GGWCC 3 cut(s) 62, 378, 1043
AvrII CCTAGG 1 cut(s) 1033
BalI TGGCCA 1 cut(s) 723
BanI GGYRCC 1 cut(s) 811
BarI GAAGNNNNNNTAC 2 cut(s) 642, 674
BbvI GCAGC 1 cut(s) 860
BccI CCATC 2 cut(s) 239, 713
BceAI ACGGC 1 cut(s) 456
BclI TGATCA 2 cut(s) 37, 484
BcoDI GTCTC 2 cut(s) 221, 526
BfaI CTAG 3 cut(s) 614, 966, 1034
BfmI CTRYAG 1 cut(s) 18
BfoI RGCGCY 1 cut(s) 1033
BfrI CTTAAG 1 cut(s) 689
BglII AGATCT 1 cut(s) 685
BisI GCNGC 2 cut(s) 630, 849
BlnI CCTAGG 1 cut(s) 1033
BlsI GCNGC 2 cut(s) 631, 850
Bme18I GGWCC 3 cut(s) 62, 378, 1043
BmgT120I GGNCC 3 cut(s) 62, 378, 1043
BmiI GGNNCC 4 cut(s) 249, 379, 813, 917
BmsI GCATC 3 cut(s) 312, 703, 876
BmtI GCTAGC 1 cut(s) 617
BpmI CTGGAG 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 304
BsaJI CCNNGG 2 cut(s) 381, 1033
BsaWI WCCGGW 2 cut(s) 814, 893
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 3 cut(s) 604, 911, 1052
Bse1I ACTGG 3 cut(s) 71, 83, 100
BseDI CCNNGG 2 cut(s) 381, 1033
BseGI GGATG 3 cut(s) 436, 487, 718
BseLI CCNNNNNNNGG 3 cut(s) 604, 911, 1052
BseMII CTCAG 2 cut(s) 257, 624
BseNI ACTGG 3 cut(s) 71, 83, 100
BseRI GAGGAG 3 cut(s) 287, 301, 623
BseXI GCAGC 1 cut(s) 860
BshFI GGCC 3 cut(s) 99, 597, 723
BshNI GGYRCC 1 cut(s) 811
BsiSI CCGG 2 cut(s) 815, 894
BslFI GGGAC 2 cut(s) 206, 391
BslI CCNNNNNNNGG 3 cut(s) 604, 911, 1052
BsmAI GTCTC 2 cut(s) 221, 526
BsmFI GGGAC 2 cut(s) 206, 391
BsnI GGCC 3 cut(s) 99, 597, 723
Bsp143I GATC 7 cut(s) 37, 112, 134, 151, 420, 484, 685
BspACI CCGC 2 cut(s) 630, 647
BspANI GGCC 3 cut(s) 99, 597, 723
BspCNI CTCAG 2 cut(s) 256, 625
BspHI TCATGA 3 cut(s) 40, 423, 838
BspLI GGNNCC 4 cut(s) 249, 379, 813, 917
BspOI GCTAGC 1 cut(s) 617
BspPI GGATC 2 cut(s) 107, 146
BspT107I GGYRCC 1 cut(s) 811
BspTI CTTAAG 1 cut(s) 689
BsrI ACTGG 3 cut(s) 71, 83, 100
BssECI CCNNGG 2 cut(s) 381, 1033
BssMI GATC 7 cut(s) 37, 112, 134, 151, 420, 484, 685
BssT1I CCWWGG 1 cut(s) 1033
Bst4CI ACNGT 1 cut(s) 920
Bst6I CTCTTC 1 cut(s) 826
BstAFI CTTAAG 1 cut(s) 689
BstC8I GCNNGC 2 cut(s) 615, 750
BstDEI CTNAG 3 cut(s) 243, 506, 633
BstF5I GGATG 3 cut(s) 436, 487, 718
BstH2I RGCGCY 1 cut(s) 1033
BstHHI GCGC 1 cut(s) 1032
BstKTI GATC 7 cut(s) 40, 115, 137, 154, 423, 487, 688
BstMAI GTCTC 2 cut(s) 221, 526
BstMBI GATC 7 cut(s) 37, 112, 134, 151, 420, 484, 685
BstSFI CTRYAG 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 860
BstX2I RGATCY 1 cut(s) 685
BstXI CCANNNNNNTGG 1 cut(s) 593
BstYI RGATCY 1 cut(s) 685
BsuRI GGCC 3 cut(s) 99, 597, 723
BtgZI GCGATG 1 cut(s) 410
BtsCI GGATG 3 cut(s) 436, 487, 718
BtsIMutI CAGTG 2 cut(s) 93, 164
Cac8I GCNNGC 2 cut(s) 615, 750
CciI TCATGA 3 cut(s) 40, 423, 838
CfoI GCGC 1 cut(s) 1032
Cfr13I GGNCC 3 cut(s) 62, 378, 1043
CseI GACGC 1 cut(s) 1028
Csp6I GTAC 1 cut(s) 68
CviAII CATG 8 cut(s) 41, 221, 424, 593, 725, 808, 839, 1023
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 3 cut(s) 243, 506, 633
DpnI GATC 7 cut(s) 39, 114, 136, 153, 422, 486, 687
DpnII GATC 7 cut(s) 37, 112, 134, 151, 420, 484, 685
EaeI YGGCCR 1 cut(s) 721
Eam1104I CTCTTC 1 cut(s) 826
EarI CTCTTC 1 cut(s) 826
Eco130I CCWWGG 1 cut(s) 1033
Eco47I GGWCC 3 cut(s) 62, 378, 1043
Eco57I CTGAAG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 1033
EcoT22I ATGCAT 1 cut(s) 681
ErhI CCWWGG 1 cut(s) 1033
FaeI CATG 8 cut(s) 44, 224, 427, 596, 728, 811, 842, 1026
FaqI GGGAC 2 cut(s) 206, 391
FatI CATG 8 cut(s) 40, 220, 423, 592, 724, 807, 838, 1022
FbaI TGATCA 2 cut(s) 37, 484
Fnu4HI GCNGC 2 cut(s) 630, 849
FokI GGATG 3 cut(s) 443, 474, 725
Fsp4HI GCNGC 2 cut(s) 630, 849
FspBI CTAG 3 cut(s) 614, 966, 1034
GlaI GCGC 1 cut(s) 1031
GluI GCNGC 2 cut(s) 630, 849
GsuI CTGGAG 1 cut(s) 66
HaeII RGCGCY 1 cut(s) 1033
HaeIII GGCC 3 cut(s) 99, 597, 723
HapII CCGG 2 cut(s) 815, 894
HgaI GACGC 1 cut(s) 1028
HhaI GCGC 1 cut(s) 1032
Hin1II CATG 8 cut(s) 44, 224, 427, 596, 728, 811, 842, 1026
Hin6I GCGC 1 cut(s) 1030
HinP1I GCGC 1 cut(s) 1030
HindIII AAGCTT 2 cut(s) 503, 899
HinfI GANTC 3 cut(s) 203, 239, 534
HpaII CCGG 2 cut(s) 815, 894
HphI GGTGA 4 cut(s) 175, 376, 647, 883
Hpy166II GTNNAC 2 cut(s) 946, 1043
Hpy188I TCNGA 2 cut(s) 52, 385
Hpy188III TCNNGA 7 cut(s) 41, 245, 283, 424, 839, 913, 932
Hpy8I GTNNAC 2 cut(s) 946, 1043
HpyAV CCTTC 5 cut(s) 331, 367, 394, 421, 668
HpyCH4III ACNGT 1 cut(s) 920
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 6 cut(s) 6, 344, 350, 679, 716, 752
HpyF3I CTNAG 3 cut(s) 243, 506, 633
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 8 cut(s) 44, 224, 427, 596, 728, 811, 842, 1026
HspAI GCGC 1 cut(s) 1030
Ksp22I TGATCA 2 cut(s) 37, 484
Kzo9I GATC 7 cut(s) 37, 112, 134, 151, 420, 484, 685
LmnI GCTCC 2 cut(s) 588, 610
Lsp1109I GCAGC 1 cut(s) 860
LweI GCATC 3 cut(s) 312, 703, 876
MaeI CTAG 3 cut(s) 614, 966, 1034
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 22
MalI GATC 7 cut(s) 39, 114, 136, 153, 422, 486, 687
MboI GATC 7 cut(s) 37, 112, 134, 151, 420, 484, 685
MboII GAAGA 7 cut(s) 212, 236, 320, 337, 382, 843, 949
MflI RGATCY 1 cut(s) 685
MlsI TGGCCA 1 cut(s) 723
MluCI AATT 3 cut(s) 277, 455, 757
MluNI TGGCCA 1 cut(s) 723
MlyI GAGTC 1 cut(s) 528
MnlI CCTC 9 cut(s) 265, 279, 310, 360, 391, 456, 557, 601, 827
Mox20I TGGCCA 1 cut(s) 723
Mph1103I ATGCAT 1 cut(s) 681
MroXI GAANNNNTTC 1 cut(s) 822
MscI TGGCCA 1 cut(s) 723
MseI TTAA 3 cut(s) 453, 473, 690
MslI CAYNNNNRTG 2 cut(s) 591, 666
Msp20I TGGCCA 1 cut(s) 723
MspA1I CMGCKG 1 cut(s) 632
MspCI CTTAAG 1 cut(s) 689
MspI CCGG 2 cut(s) 815, 894
NdeII GATC 7 cut(s) 37, 112, 134, 151, 420, 484, 685
NheI GCTAGC 1 cut(s) 613
NlaIII CATG 8 cut(s) 44, 224, 427, 596, 728, 811, 842, 1026
NlaIV GGNNCC 4 cut(s) 249, 379, 813, 917
NsiI ATGCAT 1 cut(s) 681
PagI TCATGA 3 cut(s) 40, 423, 838
PdmI GAANNNNTTC 1 cut(s) 822
PfeI GAWTC 2 cut(s) 203, 239
PkrI GCNGC 2 cut(s) 631, 850
PleI GAGTC 1 cut(s) 528
PpsI GAGTC 1 cut(s) 528
PpuMI RGGWCCY 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 378
PspN4I GGNNCC 4 cut(s) 249, 379, 813, 917
PspPI GGNCC 3 cut(s) 62, 378, 1043
PspPPI RGGWCCY 1 cut(s) 378
PsuI RGATCY 1 cut(s) 685
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
RseI CAYNNNNRTG 2 cut(s) 591, 666
SaqAI TTAA 3 cut(s) 453, 473, 690
SatI GCNGC 2 cut(s) 630, 849
Sau3AI GATC 7 cut(s) 37, 112, 134, 151, 420, 484, 685
Sau96I GGNCC 3 cut(s) 62, 378, 1043
SchI GAGTC 1 cut(s) 528
SfaNI GCATC 3 cut(s) 312, 703, 876
SfcI CTRYAG 1 cut(s) 18
SinI GGWCC 3 cut(s) 62, 378, 1043
SmiMI CAYNNNNRTG 2 cut(s) 591, 666
SmlI CTYRAG 2 cut(s) 283, 689
SmoI CTYRAG 2 cut(s) 283, 689
Sse9I AATT 3 cut(s) 277, 455, 757
SsiI CCGC 2 cut(s) 630, 647
SspMI CTAG 3 cut(s) 614, 966, 1034
StyI CCWWGG 1 cut(s) 1033
TaaI ACNGT 1 cut(s) 920
TaiI ACGT 1 cut(s) 36
TaqI TCGA 2 cut(s) 306, 762
TasI AATT 3 cut(s) 277, 455, 757
TauI GCSGC 1 cut(s) 632
TfiI GAWTC 2 cut(s) 203, 239
Tru1I TTAA 3 cut(s) 453, 473, 690
Tru9I TTAA 3 cut(s) 453, 473, 690
TscAI CASTG 2 cut(s) 100, 171
TseI GCWGC 1 cut(s) 848
TspDTI ATGAA 7 cut(s) 136, 237, 413, 440, 484, 650, 780
TspRI CASTG 2 cut(s) 100, 171
Vha464I CTTAAG 1 cut(s) 689
VpaK11BI GGWCC 3 cut(s) 62, 378, 1043
XapI RAATTY 3 cut(s) 277, 455, 757
XmaJI CCTAGG 1 cut(s) 1033
XmnI GAANNNNTTC 1 cut(s) 822
XspI CTAG 3 cut(s) 614, 966, 1034
Zsp2I ATGCAT 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.