FvH4_2g30320
MYB Family

Transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
N/A
Physical Location & Seq
Reverse (-)
23453300 .. 23453825
526 bp
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UTR
Exon/CDS
Intron
FvH4_2g30320.t1

Sequence Viewer

Length: 243 bp
ATGGAGAAGGAAGATGGCACAAGATTCCTCTCAAAGCAGGTTAGCTTAAACAGATGCAGAAAGAGCTGTAGATTGAGGTGGTTAAATTATCTCAAGCCAACCATCAAGAGAGGAAAATTTGAAGATGATGAAGTCGATCTAATGATTAGGCTTCGGAAGCTTTTAGGAAACAGGCAAGGACGTACTACTGATCAATTTCTCTATAACTTATTATTAATTAGGTTTCCGGCCAACAAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

81

Amino Acids

9.65

Weight (kDa)

10.34

Isoelectric Point (pI)

36.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_6 PF13921 14 - 46 6.9e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 28
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 1 cut(s) 116
AfaI GTAC 1 cut(s) 184
AgsI TTSAA 1 cut(s) 122
AluBI AGCT 3 cut(s) 45, 66, 160
AluI AGCT 3 cut(s) 45, 66, 160
AoxI GGCC 1 cut(s) 228
ApoI RAATTY 1 cut(s) 116
AseI ATTAAT 1 cut(s) 215
BccI CCATC 2 cut(s) 8, 110
BclI TGATCA 1 cut(s) 190
BfmI CTRYAG 1 cut(s) 67
BfuAI ACCTGC 1 cut(s) 28
BmsI GCATC 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 77
BshFI GGCC 1 cut(s) 230
BsiSI CCGG 1 cut(s) 227
BsnI GGCC 1 cut(s) 230
Bsp143I GATC 2 cut(s) 136, 190
BspANI GGCC 1 cut(s) 230
BspMI ACCTGC 1 cut(s) 28
BssMI GATC 2 cut(s) 136, 190
BstKTI GATC 2 cut(s) 139, 193
BstMBI GATC 2 cut(s) 136, 190
BstMWI GCNNNNNNNGC 2 cut(s) 63, 157
BstSFI CTRYAG 1 cut(s) 67
BsuRI GGCC 1 cut(s) 230
BveI ACCTGC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 183
CviJI RGCY 6 cut(s) 45, 66, 97, 151, 160, 230
CviKI_1 RGCY 6 cut(s) 45, 66, 97, 151, 160, 230
CviQI GTAC 1 cut(s) 183
DpnI GATC 2 cut(s) 138, 192
DpnII GATC 2 cut(s) 136, 190
EaeI YGGCCR 1 cut(s) 228
FaiI YATR 1 cut(s) 204
FbaI TGATCA 1 cut(s) 190
HaeIII GGCC 1 cut(s) 230
HapII CCGG 1 cut(s) 227
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 1 cut(s) 24
HpaII CCGG 1 cut(s) 227
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 157
HpySE526I ACGT 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 2 cut(s) 136, 190
LpnPI CCDG 2 cut(s) 23, 157
LweI GCATC 1 cut(s) 44
MaeII ACGT 1 cut(s) 181
MalI GATC 2 cut(s) 138, 192
MboI GATC 2 cut(s) 136, 190
MboII GAAGA 2 cut(s) 23, 134
MluCI AATT 4 cut(s) 85, 116, 194, 216
MnlI CCTC 3 cut(s) 38, 69, 104
MseI TTAA 4 cut(s) 47, 83, 215, 241
MspI CCGG 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 63, 157
NdeII GATC 2 cut(s) 136, 190
PfeI GAWTC 1 cut(s) 24
PshBI ATTAAT 1 cut(s) 215
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
SaqAI TTAA 4 cut(s) 47, 83, 215, 241
Sau3AI GATC 2 cut(s) 136, 190
SetI ASST 8 cut(s) 42, 47, 68, 80, 162, 184, 224, 240
SfaNI GCATC 1 cut(s) 44
SfcI CTRYAG 1 cut(s) 67
SgeI CNNG 7 cut(s) 33, 50, 106, 118, 184, 188, 239
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 4 cut(s) 85, 116, 194, 216
TaiI ACGT 1 cut(s) 184
TaqI TCGA 1 cut(s) 135
TasI AATT 4 cut(s) 85, 116, 194, 216
TfiI GAWTC 1 cut(s) 24
Tru1I TTAA 4 cut(s) 47, 83, 215, 241
Tru9I TTAA 4 cut(s) 47, 83, 215, 241
TspDTI ATGAA 1 cut(s) 144
VspI ATTAAT 1 cut(s) 215
XapI RAATTY 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.