Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

17906092 .. 17907421

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g24810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTTAGCGTTACAAGAAAAACTCATAATCAAGCATCCATTTCTGGTTAGGAAGTTCTTTGACATTGCATTTCATATAATGTCCCCAACCTTGCTAGCAGCGATCTATGTCTCTGTGGAGAGGGCACATAGAGCATACACGGTGGAATTAGAAGCTGAGGTGAATCACCTTGAAGAGGAGAATGAAAGGCTAAAGGAAACAGTGGCGGGAATCGAAGAGAGGCGTAGACAAGAGGTGATGGCAAGGAAGCAATCCACAAAAGCGCAAAGGTTGGCAGCGAAGTCGAGGACAATGAGGAGGACAATGCTTCTCCACGTAATCACAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008134 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

110

Amino Acids

12.81

Weight (kDa)

9.98

Isoelectric Point (pI)

65.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	226
AciI	CCGC	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	1 cut(s)	173
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
Alw26I	GTCTC	1 cut(s)	115
ApeKI	GCWGC	2 cut(s)	98, 275
AspLEI	GCGC	1 cut(s)	265
AsuHPI	GGTGA	3 cut(s)	158, 172, 247
AsuNHI	GCTAGC	1 cut(s)	94
BaeGI	GKGCMC	1 cut(s)	127
BbvCI	CCTCAGC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	110, 287
BccI	CCATC	1 cut(s)	232
BcgI	CGANNNNNNTGC	2 cut(s)	264, 298
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	1 cut(s)	95
BisI	GCNGC	2 cut(s)	99, 276
BlsI	GCNGC	2 cut(s)	100, 277
BmsI	GCATC	1 cut(s)	43
BmtI	GCTAGC	1 cut(s)	98
Bpu10I	CCTNAGC	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	147
BseRI	GAGGAG	2 cut(s)	191, 310
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	2 cut(s)	110, 287
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	102
BspACI	CCGC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	148
BspOI	GCTAGC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	63
BssMI	GATC	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	142, 202
Bst6I	CTCTTC	2 cut(s)	168, 210
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	156
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	1 cut(s)	105
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	2 cut(s)	110, 287
BtsCI	GGATG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	96
CfoI	GCGC	1 cut(s)	265
CviJI	RGCY	2 cut(s)	155, 190
CviKI_1	RGCY	2 cut(s)	155, 190
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
Eam1104I	CTCTTC	2 cut(s)	168, 210
EarI	CTCTTC	2 cut(s)	168, 210
EcoNI	CCTNNNNNAGG	1 cut(s)	173
FaiI	YATR	6 cut(s)	26, 75, 77, 108, 129, 136
FaqI	GGGAC	1 cut(s)	67
FauI	CCCGC	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	226
Fnu4HI	GCNGC	2 cut(s)	99, 276
FokI	GGATG	1 cut(s)	21
Fsp4HI	GCNGC	2 cut(s)	99, 276
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	2 cut(s)	99, 276
HhaI	GCGC	1 cut(s)	265
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	2 cut(s)	163, 210
HphI	GGTGA	3 cut(s)	158, 172, 247
Hpy166II	GTNNAC	1 cut(s)	227
Hpy8I	GTNNAC	1 cut(s)	227
HpyCH4III	ACNGT	2 cut(s)	142, 202
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	315
HspAI	GCGC	1 cut(s)	263
Kzo9I	GATC	1 cut(s)	102
LpnPI	CCDG	1 cut(s)	29
Lsp1109I	GCAGC	2 cut(s)	110, 287
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	2 cut(s)	185, 227
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	1 cut(s)	146
MnlI	CCTC	8 cut(s)	114, 151, 169, 213, 226, 279, 288, 291
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	1 cut(s)	102
NheI	GCTAGC	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	163, 210
PkrI	GCNGC	2 cut(s)	100, 277
Ppu21I	YACGTR	1 cut(s)	316
SatI	GCNGC	2 cut(s)	99, 276
Sau3AI	GATC	1 cut(s)	102
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	7 cut(s)	92, 157, 162, 171, 237, 272, 318
SfaNI	GCATC	1 cut(s)	43
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	1 cut(s)	206
SspMI	CTAG	1 cut(s)	95
TaaI	ACNGT	2 cut(s)	142, 202
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	2 cut(s)	213, 284
TasI	AATT	1 cut(s)	146
TfiI	GAWTC	2 cut(s)	163, 210
TscAI	CASTG	1 cut(s)	207
TseI	GCWGC	2 cut(s)	98, 275
TspDTI	ATGAA	2 cut(s)	62, 198
TspRI	CASTG	1 cut(s)	207
XagI	CCTNNNNNAGG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	226
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.