Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2514956 .. 2515312

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g02780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGCAGCGCAAGGAGCTCATTATATTGTGTCTTGAGGATTGCAGTGACTGGAGTAATGCAACTATGCGAAGAGTTGTTATGCAAATTGATCATGAGCTTTCGAGGACTGTGCACAGTTTGATACGTACGAAGATACCACAGTTTGAACGGGCAGATGTGAAGCTTAGTCATCTGGCCTCTGGCAATGACTTGACTTCTATTCAAACTACGGAAACAAGGCTGGCTGATCTGCTGGACGGTACACTTCGGAATAGGAAACTTGCTCCTTCATCTGAAAGGATTGTTTATGCTTTGGTGCAGCAGATATATATTTCATGGCATAAGAGAATATTTCTTGGCCTATGCGGAGTACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0007031 GO:0007623 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016559 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048511 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_N WD40

Protein Analysis

119

Amino Acids

13.63

Weight (kDa)

9.25

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	345
AfaI	GTAC	3 cut(s)	127, 241, 351
AgsI	TTSAA	2 cut(s)	146, 203
AluBI	AGCT	3 cut(s)	16, 97, 163
AluI	AGCT	3 cut(s)	16, 97, 163
Alw21I	GWGCWC	2 cut(s)	18, 114
Alw44I	GTGCAC	1 cut(s)	110
AlwNI	CAGNNNCTG	1 cut(s)	48
AoxI	GGCC	2 cut(s)	174, 337
ApaLI	GTGCAC	1 cut(s)	110
ApeKI	GCWGC	2 cut(s)	4, 298
AspLEI	GCGC	1 cut(s)	9
BaeGI	GKGCMC	1 cut(s)	114
BaeI	ACNNNNGTAYC	2 cut(s)	125, 158
BanII	GRGCYC	1 cut(s)	18
Bbv12I	GWGCWC	2 cut(s)	18, 114
BbvI	GCAGC	2 cut(s)	16, 310
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BclI	TGATCA	1 cut(s)	88
BisI	GCNGC	2 cut(s)	5, 299
BlsI	GCNGC	2 cut(s)	6, 300
BpmI	CTGGAG	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	53
Bse3DI	GCAATG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	190
BseNI	ACTGG	1 cut(s)	53
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	2 cut(s)	16, 310
BsgI	GTGCAG	1 cut(s)	317
BshFI	GGCC	2 cut(s)	176, 339
BsiHKAI	GWGCWC	2 cut(s)	18, 114
BsiWI	CGTACG	1 cut(s)	125
BsnI	GGCC	2 cut(s)	176, 339
Bsp1286I	GDGCHC	2 cut(s)	18, 114
Bsp143I	GATC	2 cut(s)	88, 226
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	2 cut(s)	176, 339
BspHI	TCATGA	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	53
BssMI	GATC	2 cut(s)	88, 226
Bst4CI	ACNGT	4 cut(s)	109, 116, 141, 239
Bst6I	CTCTTC	1 cut(s)	64
BstBAI	YACGTR	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	2 cut(s)	91, 229
BstMBI	GATC	2 cut(s)	88, 226
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstSLI	GKGCMC	1 cut(s)	114
BstSNI	TACGTA	1 cut(s)	125
BstV1I	GCAGC	2 cut(s)	16, 310
BsuRI	GGCC	2 cut(s)	176, 339
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	222
CaiI	CAGNNNCTG	1 cut(s)	48
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	1 cut(s)	9
Csp6I	GTAC	3 cut(s)	126, 240, 350
CviAII	CATG	2 cut(s)	92, 315
CviJI	RGCY	7 cut(s)	16, 97, 163, 176, 220, 224, 339
CviKI_1	RGCY	7 cut(s)	16, 97, 163, 176, 220, 224, 339
CviQI	GTAC	3 cut(s)	126, 240, 350
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	2 cut(s)	90, 228
DpnII	GATC	2 cut(s)	88, 226
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Ecl136II	GAGCTC	1 cut(s)	16
Eco105I	TACGTA	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	18
Eco53kI	GAGCTC	1 cut(s)	16
EcoICRI	GAGCTC	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	18
FaeI	CATG	2 cut(s)	95, 318
FatI	CATG	2 cut(s)	91, 314
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	2 cut(s)	5, 299
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	2 cut(s)	5, 299
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	2 cut(s)	5, 299
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	2 cut(s)	176, 339
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	2 cut(s)	95, 318
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HindIII	AAGCTT	1 cut(s)	161
Hpy166II	GTNNAC	2 cut(s)	112, 242
Hpy188I	TCNGA	2 cut(s)	249, 274
Hpy188III	TCNNGA	2 cut(s)	32, 92
Hpy8I	GTNNAC	2 cut(s)	112, 242
HpyAV	CCTTC	1 cut(s)	276
HpyCH4III	ACNGT	4 cut(s)	109, 116, 141, 239
HpyCH4IV	ACGT	2 cut(s)	124, 352
HpyCH4V	TGCA	6 cut(s)	4, 42, 59, 82, 112, 298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	2 cut(s)	124, 352
Hsp92II	CATG	2 cut(s)	95, 318
HspAI	GCGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	88, 226
LmnI	GCTCC	2 cut(s)	13, 268
LpnPI	CCDG	5 cut(s)	34, 158, 165, 206, 218
Lsp1109I	GCAGC	2 cut(s)	16, 310
MaeII	ACGT	2 cut(s)	124, 352
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	2 cut(s)	90, 228
MboI	GATC	2 cut(s)	88, 226
MboII	GAAGA	2 cut(s)	81, 142
MhlI	GDGCHC	2 cut(s)	18, 114
MluCI	AATT	1 cut(s)	84
MnlI	CCTC	3 cut(s)	28, 96, 187
MwoI	GCNNNNNNNGC	1 cut(s)	13
NdeII	GATC	2 cut(s)	88, 226
NlaIII	CATG	2 cut(s)	95, 318
NmuCI	GTSAC	1 cut(s)	44
PagI	TCATGA	1 cut(s)	91
Pfl23II	CGTACG	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	6, 300
Ppu21I	YACGTR	1 cut(s)	125
Psp124BI	GAGCTC	1 cut(s)	18
PspLI	CGTACG	1 cut(s)	125
PstNI	CAGNNNCTG	1 cut(s)	48
RsaI	GTAC	3 cut(s)	127, 241, 351
RsaNI	GTAC	3 cut(s)	126, 240, 350
SacI	GAGCTC	1 cut(s)	18
SatI	GCNGC	2 cut(s)	5, 299
Sau3AI	GATC	2 cut(s)	88, 226
SduI	GDGCHC	2 cut(s)	18, 114
SetI	ASST	5 cut(s)	18, 99, 127, 165, 355
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
SnaBI	TACGTA	1 cut(s)	125
Sse9I	AATT	1 cut(s)	84
SsiI	CCGC	1 cut(s)	345
SspI	AATATT	1 cut(s)	330
SstI	GAGCTC	1 cut(s)	18
TaaI	ACNGT	4 cut(s)	109, 116, 141, 239
TaiI	ACGT	2 cut(s)	127, 355
TaqI	TCGA	1 cut(s)	101
TasI	AATT	1 cut(s)	84
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	2 cut(s)	4, 298
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	258, 303
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	1 cut(s)	49
VneI	GTGCAC	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.