Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4689687 .. 4694687

Gene Structure 5001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTCCTTGAGGACATATCTTGATGCAGCTTGGAGGGATGGGAAGGCACCAATTGACCCATCAACCCTGGTGAAAGTGGAAGATATTGATTCCTATGCGCCAAAGGATTTGCTAATCGTCACAACTGGCTCTCAAGCAGAACCTCGTGCGGCGCTAAATCTTGCATCATTTGGAGGTAGTCATTCTGTCAAACTGACCAAGGAAGATATAATTTTATATTCTGCTAAGGTGATTCCTGGTAACGAATCTCGGGTAATGAAAATGTTAAACCGCATATCAGATATGGGGTCAACAATAGTGATGGGTAAAAACGAGGGGCTGCACACTTCTGGTCATGGTTACCGTGGGGAGCTGATAAGTTTGAACCATCTCAAGATTTTCACTTTTGACGAGGAAGTGCTTAGAATTGTGAAGCCGCAGCACTTTTTGCCCATGCATGGAGAGCTCTTGTTTCTCAAAGAGCATGAATTGCTCGGGAGATCAAACGGCATCCATCACACCACTCATAAAAGGAAAGATAAGGTTACTACCCGATGTTTGTGGCTTGACAAAGGAAAGCTATATGATGCACTCTATAAAGCTGCCCATGCTGCACTGTCAAGCTGCCCCATTAATTGTCCTTTACCTCACATGGAAAGAACAGTGTCCGAAGTATTAAGGAAATTGGTTAGGAAATATAGTGGTAAAAGGCCAGATGTTATTGCTATTGCCATGGAGAATCCCACAGCAGTTCTTGCTGATGAGGAAAGCAAGAGTGGAAAGAGGAGCCAAAAGAGTTGGCCATATTATGAGGAAATGGATGGAGGTTTGCCTGATTCAGAGGCAATGGCAACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008409 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009914 GO:0009942 GO:0009987 GO:0010154 GO:0010817 GO:0016043 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B Lactamase_B_2 Myb_DNA-bind_4 RMMBL

Protein Analysis

280

Amino Acids

31.14

Weight (kDa)

8.78

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_J_b_CASP	PF22505	3 - 92	8e-17	Ribonuclease J, beta-CASP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	46
AciI	CCGC	3 cut(s)	149, 271, 416
AcoI	YGGCCR	1 cut(s)	779
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgsI	TTSAA	1 cut(s)	364
AjnI	CCWGG	2 cut(s)	66, 235
AluBI	AGCT	6 cut(s)	29, 352, 445, 559, 581, 603
AluI	AGCT	6 cut(s)	29, 352, 445, 559, 581, 603
Alw21I	GWGCWC	1 cut(s)	447
Ama87I	CYCGRG	2 cut(s)	249, 473
AoxI	GGCC	2 cut(s)	689, 779
ApeKI	GCWGC	6 cut(s)	26, 319, 418, 581, 590, 603
AseI	ATTAAT	1 cut(s)	612
AspLEI	GCGC	2 cut(s)	100, 154
AsuHPI	GGTGA	2 cut(s)	82, 241
AvaI	CYCGRG	2 cut(s)	249, 473
BalI	TGGCCA	1 cut(s)	781
BanI	GGYRCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	447
BauI	CACGAG	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	447
BbvI	GCAGC	6 cut(s)	38, 306, 430, 568, 577, 590
BccI	CCATC	6 cut(s)	32, 67, 295, 375, 501, 794
BceAI	ACGGC	1 cut(s)	502
BciT130I	CCWGG	2 cut(s)	68, 237
BfoI	RGCGCY	1 cut(s)	155
BisI	GCNGC	8 cut(s)	27, 150, 320, 416, 419, 582, 591, 604
BlsI	GCNGC	8 cut(s)	28, 151, 321, 417, 420, 583, 592, 605
Bme1390I	CCNGG	2 cut(s)	68, 237
BmeT110I	CYCGRG	2 cut(s)	249, 473
BmiI	GGNNCC	2 cut(s)	48, 767
BmrFI	CCNGG	2 cut(s)	68, 237
BmsI	GCATC	4 cut(s)	13, 173, 498, 556
Bpu10I	CCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	3 cut(s)	28, 117, 356
BsaJI	CCNNGG	4 cut(s)	66, 198, 343, 711
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse1I	ACTGG	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	831
BseBI	CCWGG	2 cut(s)	68, 237
BseDI	CCNNGG	4 cut(s)	66, 198, 343, 711
BseGI	GGATG	3 cut(s)	43, 489, 805
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMI	GCAATG	1 cut(s)	831
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	778
BseXI	GCAGC	6 cut(s)	38, 306, 430, 568, 577, 590
BsgI	GTGCAG	2 cut(s)	305, 576
BshFI	GGCC	2 cut(s)	691, 781
BshNI	GGYRCC	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	447
BsiHKCI	CYCGRG	2 cut(s)	249, 473
BslI	CCNNNNNNNGG	1 cut(s)	437
BsnI	GGCC	2 cut(s)	691, 781
BsoBI	CYCGRG	2 cut(s)	249, 473
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp143I	GATC	1 cut(s)	479
Bsp19I	CCATGG	1 cut(s)	711
BspACI	CCGC	3 cut(s)	149, 271, 416
BspANI	GGCC	2 cut(s)	691, 781
BspLI	GGNNCC	2 cut(s)	48, 767
BspT107I	GGYRCC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	831
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	4 cut(s)	66, 198, 343, 711
BssMI	GATC	1 cut(s)	479
BssSI	CACGAG	1 cut(s)	144
BssT1I	CCWWGG	2 cut(s)	198, 711
Bst2BI	CACGAG	1 cut(s)	144
Bst2UI	CCWGG	2 cut(s)	68, 237
Bst4CI	ACNGT	3 cut(s)	344, 597, 643
BstAPI	GCANNNNNTGC	3 cut(s)	427, 469, 734
BstDEI	CTNAG	2 cut(s)	225, 401
BstDSI	CCRYGG	2 cut(s)	343, 711
BstEII	GGTNACC	1 cut(s)	338
BstF5I	GGATG	3 cut(s)	43, 489, 805
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	2 cut(s)	100, 154
BstKTI	GATC	1 cut(s)	482
BstMBI	GATC	1 cut(s)	479
BstMWI	GCNNNNNNNGC	6 cut(s)	427, 442, 469, 587, 590, 734
BstNI	CCWGG	2 cut(s)	68, 237
BstPI	GGTNACC	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	66, 235
BstV1I	GCAGC	6 cut(s)	38, 306, 430, 568, 577, 590
BsuRI	GGCC	2 cut(s)	691, 781
BtgI	CCRYGG	2 cut(s)	343, 711
BtsCI	GGATG	3 cut(s)	43, 489, 805
BtsIMutI	CAGTG	2 cut(s)	593, 648
CfoI	GCGC	2 cut(s)	100, 154
CviAII	CATG	7 cut(s)	335, 433, 437, 464, 587, 631, 712
DdeI	CTNAG	2 cut(s)	225, 401
DpnI	GATC	1 cut(s)	481
DpnII	GATC	1 cut(s)	479
EaeI	YGGCCR	1 cut(s)	779
Ecl136II	GAGCTC	1 cut(s)	445
Eco130I	CCWWGG	2 cut(s)	198, 711
Eco24I	GRGCYC	1 cut(s)	447
Eco53kI	GAGCTC	1 cut(s)	445
Eco88I	CYCGRG	2 cut(s)	249, 473
Eco91I	GGTNACC	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	445
EcoO65I	GGTNACC	1 cut(s)	338
EcoRII	CCWGG	2 cut(s)	66, 235
EcoT14I	CCWWGG	2 cut(s)	198, 711
EcoT22I	ATGCAT	1 cut(s)	438
EcoT38I	GRGCYC	1 cut(s)	447
ErhI	CCWWGG	2 cut(s)	198, 711
FaeI	CATG	7 cut(s)	338, 436, 440, 467, 590, 634, 715
FatI	CATG	7 cut(s)	334, 432, 436, 463, 586, 630, 711
Fnu4HI	GCNGC	8 cut(s)	27, 150, 320, 416, 419, 582, 591, 604
FokI	GGATG	3 cut(s)	50, 476, 812
FriOI	GRGCYC	1 cut(s)	447
Fsp4HI	GCNGC	8 cut(s)	27, 150, 320, 416, 419, 582, 591, 604
GlaI	GCGC	2 cut(s)	99, 153
GluI	GCNGC	8 cut(s)	27, 150, 320, 416, 419, 582, 591, 604
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	691, 781
HhaI	GCGC	2 cut(s)	100, 154
Hin1II	CATG	7 cut(s)	338, 436, 440, 467, 590, 634, 715
Hin6I	GCGC	2 cut(s)	98, 152
HinP1I	GCGC	2 cut(s)	98, 152
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HinfI	GANTC	5 cut(s)	89, 232, 245, 718, 815
HphI	GGTGA	2 cut(s)	82, 241
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	3 cut(s)	280, 649, 820
Hpy188III	TCNNGA	3 cut(s)	20, 373, 475
Hpy8I	GTNNAC	1 cut(s)	291
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	3 cut(s)	344, 597, 643
HpyCH4V	TGCA	6 cut(s)	26, 164, 322, 436, 569, 593
HpyF10VI	GCNNNNNNNGC	6 cut(s)	427, 442, 469, 587, 590, 734
HpyF3I	CTNAG	2 cut(s)	225, 401
Hsp92II	CATG	7 cut(s)	338, 436, 440, 467, 590, 634, 715
HspAI	GCGC	2 cut(s)	98, 152
Kzo9I	GATC	1 cut(s)	479
LmnI	GCTCC	2 cut(s)	349, 765
LpnPI	CCDG	8 cut(s)	53, 80, 111, 222, 249, 315, 705, 825
Lsp1109I	GCAGC	6 cut(s)	38, 306, 430, 568, 577, 590
LweI	GCATC	4 cut(s)	13, 173, 498, 556
MaeIII	GTNAC	4 cut(s)	118, 239, 338, 523
MalI	GATC	1 cut(s)	481
MboI	GATC	1 cut(s)	479
MboII	GAAGA	2 cut(s)	92, 215
MfeI	CAATTG	1 cut(s)	51
MhlI	GDGCHC	1 cut(s)	447
MlsI	TGGCCA	1 cut(s)	781
MluCI	AATT	6 cut(s)	51, 210, 405, 467, 613, 662
MluNI	TGGCCA	1 cut(s)	781
Mox20I	TGGCCA	1 cut(s)	781
Mph1103I	ATGCAT	1 cut(s)	438
MscI	TGGCCA	1 cut(s)	781
MseI	TTAA	3 cut(s)	266, 612, 656
Msp20I	TGGCCA	1 cut(s)	781
MspR9I	CCNGG	2 cut(s)	68, 237
MunI	CAATTG	1 cut(s)	51
MvaI	CCWGG	2 cut(s)	68, 237
MwoI	GCNNNNNNNGC	6 cut(s)	427, 442, 469, 587, 590, 734
NcoI	CCATGG	1 cut(s)	711
NdeII	GATC	1 cut(s)	479
NlaIII	CATG	7 cut(s)	338, 436, 440, 467, 590, 634, 715
NlaIV	GGNNCC	2 cut(s)	48, 767
NmuCI	GTSAC	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	438
PfeI	GAWTC	5 cut(s)	89, 232, 245, 718, 815
PkrI	GCNGC	8 cut(s)	28, 151, 321, 417, 420, 583, 592, 605
PshBI	ATTAAT	1 cut(s)	612
Psp124BI	GAGCTC	1 cut(s)	447
Psp6I	CCWGG	2 cut(s)	66, 235
PspEI	GGTNACC	1 cut(s)	338
PspGI	CCWGG	2 cut(s)	66, 235
PspN4I	GGNNCC	2 cut(s)	48, 767
SacI	GAGCTC	1 cut(s)	447
SaqAI	TTAA	3 cut(s)	266, 612, 656
SatI	GCNGC	8 cut(s)	27, 150, 320, 416, 419, 582, 591, 604
Sau3AI	GATC	1 cut(s)	479
ScrFI	CCNGG	2 cut(s)	68, 237
SduI	GDGCHC	1 cut(s)	447
SfaNI	GCATC	4 cut(s)	13, 173, 498, 556
SmlI	CTYRAG	3 cut(s)	7, 132, 371
SmoI	CTYRAG	3 cut(s)	7, 132, 371
Sse9I	AATT	6 cut(s)	51, 210, 405, 467, 613, 662
SsiI	CCGC	3 cut(s)	149, 271, 416
SstI	GAGCTC	1 cut(s)	447
StyD4I	CCNGG	2 cut(s)	66, 235
StyI	CCWWGG	2 cut(s)	198, 711
TaaI	ACNGT	3 cut(s)	344, 597, 643
TasI	AATT	6 cut(s)	51, 210, 405, 467, 613, 662
TauI	GCSGC	2 cut(s)	152, 418
TfiI	GAWTC	5 cut(s)	89, 232, 245, 718, 815
Tru1I	TTAA	3 cut(s)	266, 612, 656
Tru9I	TTAA	3 cut(s)	266, 612, 656
TscAI	CASTG	2 cut(s)	600, 648
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	6 cut(s)	26, 319, 418, 581, 590, 603
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	272, 480
TspRI	CASTG	2 cut(s)	600, 648
VspI	ATTAAT	1 cut(s)	612
Zsp2I	ATGCAT	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.