FvH4_5g16681

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
N/A
Physical Location & Seq
Forward (+)
9532067 .. 9532950
884 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16681.t1

Sequence Viewer

Length: 723 bp
ATGGTATATCCAAAGAGAAAAGCGCTACGACGACCACTGACACAGACCTCTATGGCGGCTCAGCTTGTGCTGCTGGGTGTGGTGCAGCTTGTGGTGCATGAAGTAATTCTTCTTCCCAGTTCTAGTTTAACAGATACTAAAGTGGTGAGTAGTTCTGTAGTTTCAGAATGTGAGGTTAAAGAATTCCATGCATCCAAAGTTGGACAGACAGTAGCTTTGACTTCCATTGATGTTGTATCAATTTGTAACACATTAGTTTCCTGCAGGAGTCTGGATCAGCCACCTAATTGCTTTAAGCACCTATGCTTTTTCATAGAAAAGCATGCTCTTGACAATCAATGGAGTTTTATTGATCATCATTCAGATTGTTATAACTTAGTTTCATTAAGATCTCAATCAAGATTACAATCCAAGGCAATGATATATCGCAATTACAAATCTTATTATAATATTGGACAAACACTTCTTTGTCAACAATGTCAAGATGGCCGAGTTGGTCTAAGGCGCCAGTTTCAGGTACTGGTCCGAAAGGGCATGGGTTCGAATCCCATTCTTGACAAAACAATTTTTTTTTTCTGTGTATTTTCGCTCTTGTTTTATTTTATTGTTAACCAAAACATATATATATTTAAGTTCAATTATGATATATACATTTATTGGCTTCTTGTCCATGATAGCTCTAAAATACAAAGGTCTTTTTTTCATGTGAAAGAAATAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

241

Amino Acids

27.79

Weight (kDa)

9.12

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 372, 447
AccB1I GGYRCC 1 cut(s) 504
AciI CCGC 1 cut(s) 56
AclWI GGATC 1 cut(s) 282
AcoI YGGCCR 1 cut(s) 487
AcsI RAATTY 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 505
AfaI GTAC 1 cut(s) 519
AfeI AGCGCT 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 514
AgsI TTSAA 1 cut(s) 637
AluBI AGCT 4 cut(s) 64, 88, 215, 678
AluI AGCT 4 cut(s) 64, 88, 215, 678
AlwI GGATC 1 cut(s) 282
AlwNI CAGNNNCTG 1 cut(s) 520
Aor51HI AGCGCT 1 cut(s) 24
AoxI GGCC 1 cut(s) 487
ApeKI GCWGC 2 cut(s) 70, 85
ApoI RAATTY 1 cut(s) 182
ArsI GACNNNNNNTTYG 2 cut(s) 199, 231
Asp700I GAANNNNTTC 1 cut(s) 105
AspLEI GCGC 2 cut(s) 25, 507
AspS9I GGNCC 1 cut(s) 523
AsuHPI GGTGA 1 cut(s) 157
AsuII TTCGAA 1 cut(s) 542
AvaII GGWCC 1 cut(s) 523
BaeI ACNNNNGTAYC 2 cut(s) 126, 159
BanI GGYRCC 1 cut(s) 504
BarI GAAGNNNNNNTAC 2 cut(s) 96, 128
BbvI GCAGC 2 cut(s) 57, 97
BccI CCATC 1 cut(s) 479
BclI TGATCA 1 cut(s) 352
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 2 cut(s) 156, 262
BfoI RGCGCY 2 cut(s) 26, 508
BglII AGATCT 1 cut(s) 389
BisI GCNGC 3 cut(s) 57, 71, 86
BlpI GCTNAGC 1 cut(s) 60
BlsI GCNGC 3 cut(s) 58, 72, 87
Bme18I GGWCC 1 cut(s) 523
BmgT120I GGNCC 1 cut(s) 523
BmiI GGNNCC 1 cut(s) 506
BmrI ACTGGG 1 cut(s) 111
BmsI GCATC 1 cut(s) 200
BmuI ACTGGG 1 cut(s) 111
Bpu1102I GCTNAGC 1 cut(s) 60
Bpu14I TTCGAA 1 cut(s) 542
BsaBI GATNNNNATC 2 cut(s) 394, 406
BsaHI GRCGYC 1 cut(s) 505
BsaJI CCNNGG 1 cut(s) 411
Bsc4I CCNNNNNNNGG 1 cut(s) 514
Bse1I ACTGG 3 cut(s) 117, 508, 525
Bse3DI GCAATG 1 cut(s) 423
Bse8I GATNNNNATC 2 cut(s) 394, 406
BseDI CCNNGG 1 cut(s) 411
BseGI GGATG 1 cut(s) 191
BseJI GATNNNNATC 2 cut(s) 394, 406
BseLI CCNNNNNNNGG 1 cut(s) 514
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 3 cut(s) 117, 508, 525
BseXI GCAGC 2 cut(s) 57, 97
BseYI CCCAGC 1 cut(s) 73
BsgI GTGCAG 1 cut(s) 104
BshFI GGCC 1 cut(s) 489
BshNI GGYRCC 1 cut(s) 504
BslI CCNNNNNNNGG 1 cut(s) 514
BsnI GGCC 1 cut(s) 489
Bsp119I TTCGAA 1 cut(s) 542
Bsp143I GATC 3 cut(s) 274, 352, 389
Bsp1720I GCTNAGC 1 cut(s) 60
BspACI CCGC 1 cut(s) 56
BspANI GGCC 1 cut(s) 489
BspCNI CTCAG 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 506
BspMAI CTGCAG 1 cut(s) 266
BspPI GGATC 1 cut(s) 282
BspT104I TTCGAA 1 cut(s) 542
BspT107I GGYRCC 1 cut(s) 504
BsrDI GCAATG 1 cut(s) 423
BsrI ACTGG 3 cut(s) 117, 508, 525
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 3 cut(s) 274, 352, 389
BssNI GRCGYC 1 cut(s) 505
BssT1I CCWWGG 1 cut(s) 411
Bst4CI ACNGT 1 cut(s) 211
BstACI GRCGYC 1 cut(s) 505
BstBI TTCGAA 1 cut(s) 542
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 3 cut(s) 60, 376, 500
BstF5I GGATG 1 cut(s) 191
BstH2I RGCGCY 2 cut(s) 26, 508
BstHHI GCGC 2 cut(s) 25, 507
BstKTI GATC 3 cut(s) 277, 355, 392
BstMBI GATC 3 cut(s) 274, 352, 389
BstMWI GCNNNNNNNGC 2 cut(s) 70, 94
BstNSI RCATGY 1 cut(s) 326
BstSFI CTRYAG 2 cut(s) 156, 262
BstV1I GCAGC 2 cut(s) 57, 97
BstX2I RGATCY 1 cut(s) 389
BstYI RGATCY 1 cut(s) 389
BsuRI GGCC 1 cut(s) 489
BtsCI GGATG 1 cut(s) 191
BtsIMutI CAGTG 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 324
CaiI CAGNNNCTG 1 cut(s) 520
CfoI GCGC 2 cut(s) 25, 507
Cfr13I GGNCC 1 cut(s) 523
Csp6I GTAC 1 cut(s) 518
CviAII CATG 6 cut(s) 98, 188, 323, 535, 671, 704
CviJI RGCY 8 cut(s) 59, 64, 88, 215, 280, 489, 661, 678
CviKI_1 RGCY 8 cut(s) 59, 64, 88, 215, 280, 489, 661, 678
CviQI GTAC 1 cut(s) 518
DdeI CTNAG 3 cut(s) 60, 376, 500
DinI GGCGCC 1 cut(s) 506
DpnI GATC 3 cut(s) 276, 354, 391
DpnII GATC 3 cut(s) 274, 352, 389
EaeI YGGCCR 1 cut(s) 487
Eco130I CCWWGG 1 cut(s) 411
Eco47I GGWCC 1 cut(s) 523
Eco47III AGCGCT 1 cut(s) 24
EcoRI GAATTC 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 411
EcoT22I ATGCAT 1 cut(s) 193
EgeI GGCGCC 1 cut(s) 506
EheI GGCGCC 1 cut(s) 506
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 6 cut(s) 101, 191, 326, 538, 674, 707
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FatI CATG 6 cut(s) 97, 187, 322, 534, 670, 703
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 3 cut(s) 57, 71, 86
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 3 cut(s) 57, 71, 86
FspBI CTAG 1 cut(s) 123
GlaI GCGC 2 cut(s) 24, 506
GluI GCNGC 3 cut(s) 57, 71, 86
GsaI CCCAGC 1 cut(s) 77
HaeII RGCGCY 2 cut(s) 26, 508
HaeIII GGCC 1 cut(s) 489
HhaI GCGC 2 cut(s) 25, 507
Hin1I GRCGYC 1 cut(s) 505
Hin1II CATG 6 cut(s) 101, 191, 326, 538, 674, 707
Hin6I GCGC 2 cut(s) 23, 505
HinP1I GCGC 2 cut(s) 23, 505
HincII GTYRAC 2 cut(s) 473, 610
HindII GTYRAC 2 cut(s) 473, 610
HinfI GANTC 2 cut(s) 268, 544
HpaI GTTAAC 1 cut(s) 610
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 2 cut(s) 473, 610
Hpy188I TCNGA 3 cut(s) 166, 364, 527
Hpy188III TCNNGA 5 cut(s) 272, 329, 399, 482, 554
Hpy8I GTNNAC 2 cut(s) 473, 610
Hpy99I CGWCG 1 cut(s) 33
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 4 cut(s) 85, 97, 191, 264
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 94
HpyF3I CTNAG 3 cut(s) 60, 376, 500
Hsp92I GRCGYC 1 cut(s) 505
Hsp92II CATG 6 cut(s) 101, 191, 326, 538, 674, 707
HspAI GCGC 2 cut(s) 23, 505
KasI GGCGCC 1 cut(s) 504
Ksp22I TGATCA 1 cut(s) 352
KspAI GTTAAC 1 cut(s) 610
Kzo9I GATC 3 cut(s) 274, 352, 389
LpnPI CCDG 8 cut(s) 59, 130, 250, 257, 274, 500, 506, 521
Lsp1109I GCAGC 2 cut(s) 57, 97
LweI GCATC 1 cut(s) 200
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 245
MalI GATC 3 cut(s) 276, 354, 391
MboI GATC 3 cut(s) 274, 352, 389
MboII GAAGA 2 cut(s) 101, 104
MflI RGATCY 1 cut(s) 389
MluCI AATT 7 cut(s) 105, 182, 240, 286, 430, 564, 637
Mly113I GGCGCC 1 cut(s) 505
MlyI GAGTC 1 cut(s) 277
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 2 cut(s) 58, 166
Mph1103I ATGCAT 1 cut(s) 193
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 7 cut(s) 128, 177, 294, 386, 609, 630, 721
MwoI GCNNNNNNNGC 2 cut(s) 70, 94
NarI GGCGCC 1 cut(s) 505
NdeII GATC 3 cut(s) 274, 352, 389
NlaIII CATG 6 cut(s) 101, 191, 326, 538, 674, 707
NlaIV GGNNCC 1 cut(s) 506
NmeAIII GCCGAG 1 cut(s) 515
NsiI ATGCAT 1 cut(s) 193
NspI RCATGY 1 cut(s) 326
NspV TTCGAA 1 cut(s) 542
PaeI GCATGC 1 cut(s) 326
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 544
PkrI GCNGC 3 cut(s) 58, 72, 87
PleI GAGTC 1 cut(s) 276
PluTI GGCGCC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 276
PsiI TTATAA 2 cut(s) 372, 447
PspFI CCCAGC 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 506
PspPI GGNCC 1 cut(s) 523
PstI CTGCAG 1 cut(s) 266
PstNI CAGNNNCTG 1 cut(s) 520
PsuI RGATCY 1 cut(s) 389
RsaI GTAC 1 cut(s) 519
RsaNI GTAC 1 cut(s) 518
SaqAI TTAA 7 cut(s) 128, 177, 294, 386, 609, 630, 721
SatI GCNGC 3 cut(s) 57, 71, 86
Sau3AI GATC 3 cut(s) 274, 352, 389
Sau96I GGNCC 1 cut(s) 523
SbfI CCTGCAGG 1 cut(s) 266
SchI GAGTC 1 cut(s) 277
SdaI CCTGCAGG 1 cut(s) 266
SfaNI GCATC 1 cut(s) 200
SfcI CTRYAG 2 cut(s) 156, 262
SfoI GGCGCC 1 cut(s) 506
SfuI TTCGAA 1 cut(s) 542
SinI GGWCC 1 cut(s) 523
SphI GCATGC 1 cut(s) 326
Sse8387I CCTGCAGG 1 cut(s) 266
Sse9I AATT 7 cut(s) 105, 182, 240, 286, 430, 564, 637
SsiI CCGC 1 cut(s) 56
SspDI GGCGCC 1 cut(s) 504
SspI AATATT 1 cut(s) 451
SspMI CTAG 1 cut(s) 123
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 1 cut(s) 211
TaqI TCGA 1 cut(s) 542
TasI AATT 7 cut(s) 105, 182, 240, 286, 430, 564, 637
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 7 cut(s) 128, 177, 294, 386, 609, 630, 721
Tru9I TTAA 7 cut(s) 128, 177, 294, 386, 609, 630, 721
TscAI CASTG 1 cut(s) 42
TseI GCWGC 2 cut(s) 70, 85
TspDTI ATGAA 4 cut(s) 114, 301, 372, 692
TspRI CASTG 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 523
XapI RAATTY 1 cut(s) 182
XceI RCATGY 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 123
Zsp2I ATGCAT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.