Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

15797197 .. 15798184

Gene Structure 988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g24440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAGTTCACCTGACATTATTAGAGTAACAGGTGATAGCATGTTACTTCATATCTGCAACCCTGACATGATTAGTTTTCTTATGAAGTGGACTTCCAACGAAGATGAGAAACTAATCGAGGCTGTTGCCCTTCATGGTGCAAAGAACTGGACCTCAATAGCCTCCAAAGCAGGGCTGAATAGGAGCGGCAAGAGTTGCAGGCTGAGATGGGTGAACCATCTAAGACCCAACATCAAGAGAGGCGACATGTCTGAACAGGAAGAGGAGTTGATTATTAGGTTGCACAAGCTTCTTGGAAATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

102

Amino Acids

11.52

Weight (kDa)

9.14

Isoelectric Point (pI)

63.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	28 - 74	1.6e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	30 - 89	2.6e-15	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	186
AciI	CCGC	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	171
AflIII	ACRYGT	1 cut(s)	246
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	44, 223
AvaII	GGWCC	1 cut(s)	150
BccI	CCATC	2 cut(s)	201, 225
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
Bme18I	GGWCC	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
Bse1I	ACTGG	1 cut(s)	152
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	171
BspACI	CCGC	1 cut(s)	186
BspCNI	CTCAG	1 cut(s)	195
BsrBI	CCGCTC	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	255
BstAPI	GCANNNNNTGC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	2 cut(s)	203, 221
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 195
BstNSI	RCATGY	2 cut(s)	43, 250
Cac8I	GCNNGC	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	150
CviAII	CATG	4 cut(s)	40, 67, 134, 247
CviJI	RGCY	5 cut(s)	122, 161, 175, 202, 289
CviKI_1	RGCY	5 cut(s)	122, 161, 175, 202, 289
DdeI	CTNAG	2 cut(s)	203, 221
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	150
FaeI	CATG	4 cut(s)	43, 70, 137, 250
FaiI	YATR	6 cut(s)	41, 51, 68, 83, 135, 248
FatI	CATG	4 cut(s)	39, 66, 133, 246
Fnu4HI	GCNGC	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	187
GluI	GCNGC	1 cut(s)	187
Hin1II	CATG	4 cut(s)	43, 70, 137, 250
HindIII	AAGCTT	1 cut(s)	287
HphI	GGTGA	2 cut(s)	44, 223
Hpy166II	GTNNAC	3 cut(s)	8, 90, 214
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	3 cut(s)	8, 90, 214
HpyAV	CCTTC	1 cut(s)	140
HpyCH4V	TGCA	4 cut(s)	57, 140, 198, 283
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 195
HpyF3I	CTNAG	2 cut(s)	203, 221
Hsp92II	CATG	4 cut(s)	43, 70, 137, 250
LmnI	GCTCC	1 cut(s)	183
LpnPI	CCDG	7 cut(s)	15, 24, 75, 133, 156, 184, 242
MaeIII	GTNAC	2 cut(s)	25, 42
MbiI	CCGCTC	1 cut(s)	186
MboII	GAAGA	2 cut(s)	113, 272
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	5 cut(s)	112, 163, 172, 233, 256
MwoI	GCNNNNNNNGC	2 cut(s)	167, 195
NlaIII	CATG	4 cut(s)	43, 70, 137, 250
NspI	RCATGY	2 cut(s)	43, 250
PciI	ACATGT	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	188
PscI	ACATGT	1 cut(s)	246
PspPI	GGNCC	1 cut(s)	150
SatI	GCNGC	1 cut(s)	187
Sau96I	GGNCC	1 cut(s)	150
SetI	ASST	6 cut(s)	13, 34, 155, 281, 291, 305
SinI	GGWCC	1 cut(s)	150
SsiI	CCGC	1 cut(s)	186
TaqI	TCGA	1 cut(s)	117
TauI	GCSGC	1 cut(s)	189
TspDTI	ATGAA	3 cut(s)	38, 98, 122
VpaK11BI	GGWCC	1 cut(s)	150
XceI	RCATGY	2 cut(s)	43, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.