Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23788855 .. 23790146

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGTGGGATCAAAGAAGTTCCGAGGGGTCAGAGAACGCCATCCGGGATCCTGGATATCTGAGATTCGCCATCCATTACTGAAAAGGAGGGTGTGGCTTGGGACATTTGAGAGTGCAGAAGAAGCAGCACGAGCCTACGACGAGGCTGCAATTCTGATGAGCGGCCGAAATGCCAAAACAAACTTTCCAGTCACTACAACTGAAACTGAAGCTGCTAATAATAGCAATATCAATTCCAATTCCAGCAGTAGTACTAGTACTTCTTCATTGTCTGCAATCCTCAGCGCCAAGCTTCGCAACTGCTGCAAGTCTCTGACGTCTGGTTCCTTCACTTGCCTCAGGCTCGACACCGAGAATTCCCAAATCGGTGTTTGGCAAAAGCGCCCCGGGCCACGCTCAGAATCGATCGAATTGGCTGATGATAGTGGAGCTGGGACAGAAGAGTGGTTTACATGCGGAGAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043170 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901568 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

156

Amino Acids

16.88

Weight (kDa)

7.68

Isoelectric Point (pI)

58.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	6 - 53	7.1e-09	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	320
AccBSI	CCGCTC	1 cut(s)	162
AciI	CCGC	2 cut(s)	162, 456
AclWI	GGATC	3 cut(s)	16, 42, 55
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	317
AfaI	GTAC	2 cut(s)	253, 259
AhlI	ACTAGT	1 cut(s)	254
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	3 cut(s)	212, 292, 431
AluI	AGCT	3 cut(s)	212, 292, 431
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	3 cut(s)	16, 42, 55
Ama87I	CYCGRG	1 cut(s)	386
AoxI	GGCC	2 cut(s)	163, 389
ApeKI	GCWGC	4 cut(s)	125, 146, 212, 303
ApoI	RAATTY	1 cut(s)	355
AspLEI	GCGC	2 cut(s)	287, 384
AspS9I	GGNCC	1 cut(s)	389
AsuC2I	CCSGG	3 cut(s)	45, 387, 388
AvaI	CYCGRG	1 cut(s)	386
AxyI	CCTNAGG	1 cut(s)	338
BamHI	GGATCC	1 cut(s)	47
BarI	GAAGNNNNNNTAC	2 cut(s)	244, 276
BauI	CACGAG	1 cut(s)	129
BbvCI	CCTCAGC	1 cut(s)	281
BbvI	GCAGC	4 cut(s)	133, 137, 199, 290
BccI	CCATC	2 cut(s)	48, 78
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	1 cut(s)	52
BcnI	CCSGG	3 cut(s)	45, 387, 388
BcoDI	GTCTC	1 cut(s)	315
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	1 cut(s)	255
BfoI	RGCGCY	2 cut(s)	288, 385
BisI	GCNGC	5 cut(s)	126, 147, 163, 213, 304
BlsI	GCNGC	5 cut(s)	127, 148, 164, 214, 305
BmcAI	AGTACT	2 cut(s)	253, 259
Bme1390I	CCNGG	4 cut(s)	45, 52, 387, 388
BmeT110I	CYCGRG	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	2 cut(s)	49, 325
BmrFI	CCNGG	4 cut(s)	45, 52, 387, 388
Bpu10I	CCTNAGC	1 cut(s)	281
BpuMI	CCSGG	3 cut(s)	45, 387, 388
Bsa29I	ATCGAT	1 cut(s)	404
BsaHI	GRCGYC	1 cut(s)	317
BsaJI	CCNNGG	3 cut(s)	22, 385, 386
Bse1I	ACTGG	1 cut(s)	188
Bse21I	CCTNAGG	1 cut(s)	338
BseBI	CCWGG	1 cut(s)	52
BseCI	ATCGAT	1 cut(s)	404
BseDI	CCNNGG	3 cut(s)	22, 385, 386
BseGI	GGATG	2 cut(s)	40, 70
BseMII	CTCAG	4 cut(s)	51, 295, 352, 411
BseNI	ACTGG	1 cut(s)	188
BseX3I	CGGCCG	1 cut(s)	163
BseXI	GCAGC	4 cut(s)	133, 137, 199, 290
BseYI	CCCAGC	1 cut(s)	431
BsgI	GTGCAG	1 cut(s)	135
Bsh1285I	CGRYCG	2 cut(s)	166, 408
BshFI	GGCC	2 cut(s)	165, 391
BshVI	ATCGAT	1 cut(s)	404
BsiEI	CGRYCG	2 cut(s)	166, 408
BsiHKCI	CYCGRG	1 cut(s)	386
BsiSI	CCGG	2 cut(s)	44, 387
BslFI	GGGAC	2 cut(s)	115, 448
BsmAI	GTCTC	1 cut(s)	315
BsmFI	GGGAC	2 cut(s)	115, 448
BsnI	GGCC	2 cut(s)	165, 391
BsoBI	CYCGRG	1 cut(s)	386
Bsp143I	GATC	3 cut(s)	8, 47, 405
BspACI	CCGC	2 cut(s)	162, 456
BspANI	GGCC	2 cut(s)	165, 391
BspCNI	CTCAG	4 cut(s)	52, 294, 351, 410
BspDI	ATCGAT	1 cut(s)	404
BspLI	GGNNCC	2 cut(s)	49, 325
BspPI	GGATC	3 cut(s)	16, 42, 55
BsrBI	CCGCTC	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	3 cut(s)	22, 385, 386
BssMI	GATC	3 cut(s)	8, 47, 405
BssNI	GRCGYC	1 cut(s)	317
BssSI	CACGAG	1 cut(s)	129
Bst2BI	CACGAG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	435
BstACI	GRCGYC	1 cut(s)	317
BstAPI	GCANNNNNTGC	1 cut(s)	303
BstDEI	CTNAG	4 cut(s)	60, 281, 338, 397
BstF5I	GGATG	2 cut(s)	40, 70
BstH2I	RGCGCY	2 cut(s)	288, 385
BstHHI	GCGC	2 cut(s)	287, 384
BstKTI	GATC	3 cut(s)	11, 50, 408
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	3 cut(s)	8, 47, 405
BstMCI	CGRYCG	2 cut(s)	166, 408
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 131, 303, 388, 462
BstNI	CCWGG	1 cut(s)	52
BstNSI	RCATGY	1 cut(s)	456
BstSCI	CCNGG	4 cut(s)	43, 50, 385, 386
BstV1I	GCAGC	4 cut(s)	133, 137, 199, 290
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BstZI	CGGCCG	1 cut(s)	163
Bsu15I	ATCGAT	1 cut(s)	404
Bsu36I	CCTNAGG	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	165, 391
BsuTUI	ATCGAT	1 cut(s)	404
BtsCI	GGATG	2 cut(s)	40, 70
CfoI	GCGC	2 cut(s)	287, 384
Cfr13I	GGNCC	1 cut(s)	389
Cfr9I	CCCGGG	1 cut(s)	386
ClaI	ATCGAT	1 cut(s)	404
Csp6I	GTAC	2 cut(s)	252, 258
CviAII	CATG	1 cut(s)	453
CviQI	GTAC	2 cut(s)	252, 258
DdeI	CTNAG	4 cut(s)	60, 281, 338, 397
DpnI	GATC	3 cut(s)	10, 49, 407
DpnII	GATC	3 cut(s)	8, 47, 405
EaeI	YGGCCR	1 cut(s)	163
EagI	CGGCCG	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
EclXI	CGGCCG	1 cut(s)	163
Eco32I	GATATC	1 cut(s)	57
Eco52I	CGGCCG	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	228
Eco81I	CCTNAGG	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	386
EcoRI	GAATTC	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	50
EcoRV	GATATC	1 cut(s)	57
FaeI	CATG	1 cut(s)	456
FaiI	YATR	1 cut(s)	454
FaqI	GGGAC	2 cut(s)	115, 448
FatI	CATG	1 cut(s)	452
Fnu4HI	GCNGC	5 cut(s)	126, 147, 163, 213, 304
FokI	GGATG	2 cut(s)	27, 57
Fsp4HI	GCNGC	5 cut(s)	126, 147, 163, 213, 304
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	2 cut(s)	286, 383
GluI	GCNGC	5 cut(s)	126, 147, 163, 213, 304
GsaI	CCCAGC	1 cut(s)	435
HaeII	RGCGCY	2 cut(s)	288, 385
HaeIII	GGCC	2 cut(s)	165, 391
HapII	CCGG	2 cut(s)	44, 387
HhaI	GCGC	2 cut(s)	287, 384
Hin1I	GRCGYC	1 cut(s)	317
Hin1II	CATG	1 cut(s)	456
Hin6I	GCGC	2 cut(s)	285, 382
HinP1I	GCGC	2 cut(s)	285, 382
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	2 cut(s)	64, 401
HpaII	CCGG	2 cut(s)	44, 387
Hpy166II	GTNNAC	1 cut(s)	450
Hpy188I	TCNGA	6 cut(s)	23, 32, 61, 156, 315, 400
Hpy8I	GTNNAC	1 cut(s)	450
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	337, 455
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	4 cut(s)	116, 149, 275, 306
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 131, 303, 388, 462
HpyF3I	CTNAG	4 cut(s)	60, 281, 338, 397
HpySE526I	ACGT	1 cut(s)	317
Hsp92I	GRCGYC	1 cut(s)	317
Hsp92II	CATG	1 cut(s)	456
HspAI	GCGC	2 cut(s)	285, 382
Kzo9I	GATC	3 cut(s)	8, 47, 405
LmnI	GCTCC	1 cut(s)	428
LpnPI	CCDG	9 cut(s)	37, 57, 64, 201, 256, 306, 325, 400, 417
Lsp1109I	GCAGC	4 cut(s)	133, 137, 199, 290
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	317
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	3 cut(s)	10, 49, 407
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	3 cut(s)	8, 47, 405
MboII	GAAGA	3 cut(s)	131, 255, 452
MflI	RGATCY	1 cut(s)	47
MluCI	AATT	5 cut(s)	150, 232, 238, 355, 410
MnlI	CCTC	5 cut(s)	17, 81, 136, 290, 347
MspI	CCGG	2 cut(s)	44, 387
MspR9I	CCNGG	4 cut(s)	45, 52, 387, 388
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	5 cut(s)	122, 131, 303, 388, 462
NciI	CCSGG	3 cut(s)	45, 387, 388
NdeII	GATC	3 cut(s)	8, 47, 405
NlaIII	CATG	1 cut(s)	456
NlaIV	GGNNCC	2 cut(s)	49, 325
NmuCI	GTSAC	1 cut(s)	190
NspI	RCATGY	1 cut(s)	456
PfeI	GAWTC	2 cut(s)	64, 401
PfoI	TCCNGGA	2 cut(s)	43, 50
PkrI	GCNGC	5 cut(s)	127, 148, 164, 214, 305
Ple19I	CGATCG	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	50
PspFI	CCCAGC	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	49, 325
PspPI	GGNCC	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	47
PvuI	CGATCG	1 cut(s)	408
RsaI	GTAC	2 cut(s)	253, 259
RsaNI	GTAC	2 cut(s)	252, 258
SatI	GCNGC	5 cut(s)	126, 147, 163, 213, 304
Sau3AI	GATC	3 cut(s)	8, 47, 405
Sau96I	GGNCC	1 cut(s)	389
ScaI	AGTACT	2 cut(s)	253, 259
ScrFI	CCNGG	4 cut(s)	45, 52, 387, 388
SetI	ASST	4 cut(s)	214, 294, 320, 433
SmaI	CCCGGG	1 cut(s)	388
SpeI	ACTAGT	1 cut(s)	254
Sse9I	AATT	5 cut(s)	150, 232, 238, 355, 410
SsiI	CCGC	2 cut(s)	162, 456
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	4 cut(s)	43, 50, 385, 386
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	3 cut(s)	345, 404, 408
TasI	AATT	5 cut(s)	150, 232, 238, 355, 410
TatI	WGTACW	2 cut(s)	251, 257
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	2 cut(s)	64, 401
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	4 cut(s)	125, 146, 212, 303
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	255
TspMI	CCCGGG	1 cut(s)	386
XapI	RAATTY	1 cut(s)	355
XceI	RCATGY	1 cut(s)	456
XmaI	CCCGGG	1 cut(s)	386
XspI	CTAG	1 cut(s)	255
ZraI	GACGTC	1 cut(s)	318
ZrmI	AGTACT	2 cut(s)	253, 259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.