Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

28736310 .. 28737814

Gene Structure 1505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g38883.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCCGGTGCAATTGCCGGAGAAGAAAGGCCAGCGATCAGAATCGATCTCAGCACTACTTATAGCTGCGTTGGAGTGTGGCAGCACGATGGCGTCGAGATCATCCCCGATGATCAAGGGAACCGTACGACGCCGTCCTATGTGGCCTTCACCAACATAGGGTGTTTGATCGGCGACACTACCAATAGTCAGGTCGCCAAGAACGCTGCAAACACTGTTTTTGAGGGTAATGATGGATATACAGTCATCATGTCTTATTATGTTGATACCAGACACCTCGCCCACTGTGTCTTGAGTTTGGGAGGAGATTCAGTGACCCATTTGTTCAAGGTTGTTGCCGGCCTTGGCGACAAGCCTATGATTGTTATCTCCTACAAAGGCGAAGAGAAGCATTTTTCTGCAGAAGAAATATCAGCTATAGTTCTCCTTAAGATGAAACAGATTGCAGAGTCATATCTTGGTAAAAAGGTGACAAATGCAGTTATTACAGTGGCGTCTTACTTTAATGATTCTCAAAGGAGGGCCACCAGTTCGTGTGAAAAGACTGTATTAGTTTTTGATCTTGGCGGGGGGACTTTGGATGTCACTATACTTTGTATTGAAGAAAGAGTTTCCAAATGGTGGCTACCACCAGGGCCGGCCCTGTGTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0016567 GO:0017076 GO:0019538 GO:0019899 GO:0030312 GO:0030554 GO:0031090 GO:0031625 GO:0032446 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046686 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

218

Amino Acids

23.47

Weight (kDa)

5.34

Isoelectric Point (pI)

34.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	13 - 177	1e-40	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	621
AciI	CCGC	1 cut(s)	567
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	3 cut(s)	93, 131, 494
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	2 cut(s)	159, 621
AflII	CTTAAG	1 cut(s)	428
AgsI	TTSAA	2 cut(s)	328, 602
AjnI	CCWGG	1 cut(s)	631
AluBI	AGCT	2 cut(s)	66, 416
AluI	AGCT	2 cut(s)	66, 416
AoxI	GGCC	7 cut(s)	3, 29, 144, 340, 522, 635, 639
ApeKI	GCWGC	3 cut(s)	66, 82, 206
AspS9I	GGNCC	3 cut(s)	522, 635, 640
AsuHPI	GGTGA	2 cut(s)	142, 481
BbvI	GCAGC	3 cut(s)	53, 94, 193
BccI	CCATC	2 cut(s)	83, 227
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	633
BclI	TGATCA	1 cut(s)	112
BfmI	CTRYAG	2 cut(s)	399, 417
BfrI	CTTAAG	1 cut(s)	428
BisI	GCNGC	3 cut(s)	67, 83, 207
BlsI	GCNGC	3 cut(s)	68, 84, 208
Bme1390I	CCNGG	1 cut(s)	633
BmgT120I	GGNCC	3 cut(s)	522, 635, 640
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	313
Bsa29I	ATCGAT	1 cut(s)	45
BsaBI	GATNNNNATC	2 cut(s)	41, 365
BsaHI	GRCGYC	3 cut(s)	93, 131, 494
BsaJI	CCNNGG	2 cut(s)	343, 632
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 621
Bse118I	RCCGGY	3 cut(s)	5, 338, 637
Bse1I	ACTGG	1 cut(s)	528
Bse8I	GATNNNNATC	2 cut(s)	41, 365
BseBI	CCWGG	1 cut(s)	633
BseCI	ATCGAT	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	343, 632
BseGI	GGATG	2 cut(s)	102, 586
BseJI	GATNNNNATC	2 cut(s)	41, 365
BseLI	CCNNNNNNNGG	2 cut(s)	159, 621
BseMII	CTCAG	1 cut(s)	64
BseNI	ACTGG	1 cut(s)	528
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	3 cut(s)	53, 94, 193
BshFI	GGCC	7 cut(s)	5, 31, 146, 342, 524, 637, 641
BshVI	ATCGAT	1 cut(s)	45
BsiSI	CCGG	4 cut(s)	6, 18, 339, 638
BsiWI	CGTACG	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	586
BslI	CCNNNNNNNGG	2 cut(s)	159, 621
BsmFI	GGGAC	1 cut(s)	586
BsnI	GGCC	7 cut(s)	5, 31, 146, 342, 524, 637, 641
Bsp143I	GATC	6 cut(s)	36, 46, 99, 112, 168, 559
BspACI	CCGC	1 cut(s)	567
BspANI	GGCC	7 cut(s)	5, 31, 146, 342, 524, 637, 641
BspCNI	CTCAG	1 cut(s)	63
BspDI	ATCGAT	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	122
BspMAI	CTGCAG	1 cut(s)	403
BspTI	CTTAAG	1 cut(s)	428
BsrFI	RCCGGY	3 cut(s)	5, 338, 637
BsrI	ACTGG	1 cut(s)	528
BssAI	RCCGGY	3 cut(s)	5, 338, 637
BssECI	CCNNGG	2 cut(s)	343, 632
BssMI	GATC	6 cut(s)	36, 46, 99, 112, 168, 559
BssNI	GRCGYC	3 cut(s)	93, 131, 494
BssT1I	CCWWGG	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	633
Bst4CI	ACNGT	6 cut(s)	125, 217, 244, 287, 490, 547
Bst6I	CTCTTC	1 cut(s)	378
BstACI	GRCGYC	3 cut(s)	93, 131, 494
BstAFI	CTTAAG	1 cut(s)	428
BstC8I	GCNNGC	3 cut(s)	33, 340, 639
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	2 cut(s)	102, 586
BstKTI	GATC	6 cut(s)	39, 49, 102, 115, 171, 562
BstMBI	GATC	6 cut(s)	36, 46, 99, 112, 168, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNI	CCWGG	1 cut(s)	633
BstSCI	CCNGG	1 cut(s)	631
BstSFI	CTRYAG	2 cut(s)	399, 417
BstV1I	GCAGC	3 cut(s)	53, 94, 193
Bsu15I	ATCGAT	1 cut(s)	45
BsuRI	GGCC	7 cut(s)	5, 31, 146, 342, 524, 637, 641
BsuTUI	ATCGAT	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	102, 586
BtsIMutI	CAGTG	4 cut(s)	213, 283, 318, 495
Cac8I	GCNNGC	3 cut(s)	33, 340, 639
Cfr10I	RCCGGY	3 cut(s)	5, 338, 637
Cfr13I	GGNCC	3 cut(s)	522, 635, 640
ClaI	ATCGAT	1 cut(s)	45
CseI	GACGC	3 cut(s)	82, 139, 483
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	1 cut(s)	250
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	6 cut(s)	38, 48, 101, 114, 170, 561
DpnII	GATC	6 cut(s)	36, 46, 99, 112, 168, 559
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	343
FaeI	CATG	1 cut(s)	253
FaqI	GGGAC	1 cut(s)	586
FatI	CATG	1 cut(s)	249
FauI	CCCGC	1 cut(s)	560
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	3 cut(s)	67, 83, 207
FokI	GGATG	2 cut(s)	89, 593
FseI	GGCCGGCC	1 cut(s)	641
Fsp4HI	GCNGC	3 cut(s)	67, 83, 207
GluI	GCNGC	3 cut(s)	67, 83, 207
HaeIII	GGCC	7 cut(s)	5, 31, 146, 342, 524, 637, 641
HapII	CCGG	4 cut(s)	6, 18, 339, 638
HgaI	GACGC	3 cut(s)	82, 139, 483
Hin1I	GRCGYC	3 cut(s)	93, 131, 494
Hin1II	CATG	1 cut(s)	253
HinfI	GANTC	4 cut(s)	42, 308, 449, 509
HpaII	CCGG	4 cut(s)	6, 18, 339, 638
HphI	GGTGA	2 cut(s)	142, 481
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	2 cut(s)	97, 292
Hpy99I	CGWCG	2 cut(s)	98, 133
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	6 cut(s)	125, 217, 244, 287, 490, 547
HpyCH4V	TGCA	5 cut(s)	11, 209, 401, 446, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	1 cut(s)	50
Hsp92I	GRCGYC	3 cut(s)	93, 131, 494
Hsp92II	CATG	1 cut(s)	253
KroI	GCCGGC	2 cut(s)	338, 637
KroNI	GCCGGC	2 cut(s)	340, 639
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	6 cut(s)	36, 46, 99, 112, 168, 559
LpnPI	CCDG	9 cut(s)	19, 31, 45, 176, 283, 352, 541, 618, 645
Lsp1109I	GCAGC	3 cut(s)	53, 94, 193
MaeIII	GTNAC	3 cut(s)	313, 469, 583
MalI	GATC	6 cut(s)	38, 48, 101, 114, 170, 561
MboI	GATC	6 cut(s)	36, 46, 99, 112, 168, 559
MboII	GAAGA	4 cut(s)	35, 395, 416, 614
MfeI	CAATTG	1 cut(s)	12
MluCI	AATT	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	458
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	4 cut(s)	217, 287, 296, 513
MroNI	GCCGGC	2 cut(s)	338, 637
MseI	TTAA	2 cut(s)	429, 504
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	4 cut(s)	6, 18, 339, 638
MspR9I	CCNGG	1 cut(s)	633
MunI	CAATTG	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	633
MwoI	GCNNNNNNNGC	1 cut(s)	203
NaeI	GCCGGC	2 cut(s)	340, 639
NdeII	GATC	6 cut(s)	36, 46, 99, 112, 168, 559
NgoMIV	GCCGGC	2 cut(s)	338, 637
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	1 cut(s)	122
NmuCI	GTSAC	3 cut(s)	313, 469, 583
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdiI	GCCGGC	2 cut(s)	340, 639
PfeI	GAWTC	3 cut(s)	42, 308, 509
Pfl23II	CGTACG	1 cut(s)	125
PflFI	GACNNNGTC	1 cut(s)	133
PflMI	CCANNNNNTGG	1 cut(s)	621
PkrI	GCNGC	3 cut(s)	68, 84, 208
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
Psp6I	CCWGG	1 cut(s)	631
PspGI	CCWGG	1 cut(s)	631
PspLI	CGTACG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	3 cut(s)	522, 635, 640
PstI	CTGCAG	1 cut(s)	403
PsyI	GACNNNGTC	1 cut(s)	133
RigI	GGCCGGCC	1 cut(s)	641
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	429, 504
SatI	GCNGC	3 cut(s)	67, 83, 207
Sau3AI	GATC	6 cut(s)	36, 46, 99, 112, 168, 559
Sau96I	GGNCC	3 cut(s)	522, 635, 640
SchI	GAGTC	1 cut(s)	458
ScrFI	CCNGG	1 cut(s)	633
SetI	ASST	6 cut(s)	68, 195, 279, 333, 418, 471
SfcI	CTRYAG	2 cut(s)	399, 417
SmlI	CTYRAG	2 cut(s)	292, 428
SmoI	CTYRAG	2 cut(s)	292, 428
Sse9I	AATT	1 cut(s)	12
SsiI	CCGC	1 cut(s)	567
StyD4I	CCNGG	1 cut(s)	631
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	6 cut(s)	125, 217, 244, 287, 490, 547
TaqI	TCGA	2 cut(s)	45, 96
TasI	AATT	1 cut(s)	12
TfiI	GAWTC	3 cut(s)	42, 308, 509
Tru1I	TTAA	2 cut(s)	429, 504
Tru9I	TTAA	2 cut(s)	429, 504
TscAI	CASTG	4 cut(s)	220, 290, 318, 495
TseFI	GTSAC	3 cut(s)	313, 469, 583
TseI	GCWGC	3 cut(s)	66, 82, 206
Tsp45I	GTSAC	3 cut(s)	313, 469, 583
TspDTI	ATGAA	1 cut(s)	449
TspRI	CASTG	4 cut(s)	220, 290, 318, 495
Tth111I	GACNNNGTC	1 cut(s)	133
Van91I	CCANNNNNTGG	1 cut(s)	621
Vha464I	CTTAAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.