Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4852594 .. 4853426

Gene Structure 833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g08190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGCATCCCCTGACTCCGTCGTGGAATTCCGACTCCTCCGGAATTTCGAAGCAGAACAAGGCAACATGCTGTTTGAGAAGGCACTGGCTGAGTGCAACAAGGACACGCAAGACCGGTGGTGCAATGTGGCCAATAAGGTTGTGGGTGGAAAATCAGCTGAGGAATTCGAGAGGCACCATGAGAATCTGGTGCAGGATCAACCCAATTACATGGCCACTGGAAGCAATGCTAAACTCAAGAGGAAATGGAATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005886 GO:0006355 GO:0006417 GO:0006457 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0012505 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0031090 GO:0031224 GO:0031323 GO:0031326 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0034248 GO:0042175 GO:0043021 GO:0043022 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0050708 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051087 GO:0051171 GO:0051223 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098827 GO:0140110 GO:1903506 GO:1903530 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

86

Amino Acids

9.77

Weight (kDa)

6.09

Isoelectric Point (pI)

54.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	174
AccIII	TCCGGA	1 cut(s)	39
AclWI	GGATC	1 cut(s)	204
AcoI	YGGCCR	2 cut(s)	129, 213
AcsI	RAATTY	3 cut(s)	26, 43, 164
AgeI	ACCGGT	1 cut(s)	114
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
AlwI	GGATC	1 cut(s)	204
Aor13HI	TCCGGA	1 cut(s)	39
AoxI	GGCC	2 cut(s)	129, 213
ApoI	RAATTY	3 cut(s)	26, 43, 164
AsiGI	ACCGGT	1 cut(s)	114
AsuII	TTCGAA	1 cut(s)	48
BalI	TGGCCA	2 cut(s)	131, 215
BanI	GGYRCC	1 cut(s)	174
BbvCI	CCTCAGC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	176
BmsI	GCATC	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	159
Bpu14I	TTCGAA	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	221
BsaWI	WCCGGW	2 cut(s)	39, 114
Bse118I	RCCGGY	1 cut(s)	114
Bse1I	ACTGG	2 cut(s)	90, 223
Bse3DI	GCAATG	2 cut(s)	130, 232
BseAI	TCCGGA	1 cut(s)	39
BseGI	GGATG	1 cut(s)	5
BseMI	GCAATG	2 cut(s)	130, 232
BseMII	CTCAG	2 cut(s)	81, 150
BseNI	ACTGG	2 cut(s)	90, 223
BseRI	GAGGAG	1 cut(s)	26
BsgI	GTGCAG	1 cut(s)	212
BshFI	GGCC	2 cut(s)	131, 215
BshNI	GGYRCC	1 cut(s)	174
BshTI	ACCGGT	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	40, 115
BsnI	GGCC	2 cut(s)	131, 215
Bsp119I	TTCGAA	1 cut(s)	48
Bsp13I	TCCGGA	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	196
BspANI	GGCC	2 cut(s)	131, 215
BspCNI	CTCAG	2 cut(s)	82, 151
BspEI	TCCGGA	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	176
BspPI	GGATC	1 cut(s)	204
BspT104I	TTCGAA	1 cut(s)	48
BspT107I	GGYRCC	1 cut(s)	174
BsrDI	GCAATG	2 cut(s)	130, 232
BsrFI	RCCGGY	1 cut(s)	114
BsrI	ACTGG	2 cut(s)	90, 223
BssAI	RCCGGY	1 cut(s)	114
BssMI	GATC	1 cut(s)	196
BstBI	TTCGAA	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	90, 159
BstF5I	GGATG	1 cut(s)	5
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstNSI	RCATGY	1 cut(s)	70
BstXI	CCANNNNNNTGG	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	131, 215
BtsCI	GGATG	1 cut(s)	5
BtsIMutI	CAGTG	2 cut(s)	83, 216
Cfr10I	RCCGGY	1 cut(s)	114
CspAI	ACCGGT	1 cut(s)	114
CspCI	CAANNNNNGTGG	2 cut(s)	98, 133
CviAII	CATG	3 cut(s)	67, 179, 211
CviJI	RGCY	4 cut(s)	89, 131, 158, 215
CviKI_1	RGCY	4 cut(s)	89, 131, 158, 215
DdeI	CTNAG	2 cut(s)	90, 159
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
EaeI	YGGCCR	2 cut(s)	129, 213
EcoRI	GAATTC	2 cut(s)	26, 164
FaeI	CATG	3 cut(s)	70, 182, 214
FaiI	YATR	3 cut(s)	68, 180, 212
FatI	CATG	3 cut(s)	66, 178, 210
HaeIII	GGCC	2 cut(s)	131, 215
HapII	CCGG	2 cut(s)	40, 115
Hin1II	CATG	3 cut(s)	70, 182, 214
HinfI	GANTC	3 cut(s)	14, 33, 184
HpaII	CCGG	2 cut(s)	40, 115
Hpy188I	TCNGA	1 cut(s)	32
Hpy188III	TCNNGA	3 cut(s)	40, 169, 238
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	73
HpyCH4V	TGCA	3 cut(s)	96, 123, 193
HpyF3I	CTNAG	2 cut(s)	90, 159
Hsp92II	CATG	3 cut(s)	70, 182, 214
Kpn2I	TCCGGA	1 cut(s)	39
Kzo9I	GATC	1 cut(s)	196
LpnPI	CCDG	7 cut(s)	24, 53, 71, 128, 173, 179, 204
LweI	GCATC	1 cut(s)	14
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MlsI	TGGCCA	2 cut(s)	131, 215
MluCI	AATT	5 cut(s)	26, 43, 164, 205, 250
MluNI	TGGCCA	2 cut(s)	131, 215
MlyI	GAGTC	2 cut(s)	8, 27
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	4 cut(s)	47, 154, 165, 234
Mox20I	TGGCCA	2 cut(s)	131, 215
MroI	TCCGGA	1 cut(s)	39
MscI	TGGCCA	2 cut(s)	131, 215
Msp20I	TGGCCA	2 cut(s)	131, 215
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	2 cut(s)	40, 115
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	3 cut(s)	70, 182, 214
NlaIV	GGNNCC	1 cut(s)	176
NspI	RCATGY	1 cut(s)	70
NspV	TTCGAA	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	184
PflFI	GACNNNGTC	1 cut(s)	17
PinAI	ACCGGT	1 cut(s)	114
PleI	GAGTC	2 cut(s)	8, 27
PpsI	GAGTC	2 cut(s)	8, 27
PspN4I	GGNNCC	1 cut(s)	176
PsyI	GACNNNGTC	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	158
Sau3AI	GATC	1 cut(s)	196
SchI	GAGTC	2 cut(s)	8, 27
SetI	ASST	2 cut(s)	141, 160
SfaNI	GCATC	1 cut(s)	14
SfuI	TTCGAA	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	5 cut(s)	26, 43, 164, 205, 250
TaqI	TCGA	2 cut(s)	48, 168
TasI	AATT	5 cut(s)	26, 43, 164, 205, 250
TfiI	GAWTC	1 cut(s)	184
TscAI	CASTG	2 cut(s)	90, 223
TspGWI	ACGGA	1 cut(s)	7
TspRI	CASTG	2 cut(s)	90, 223
Tth111I	GACNNNGTC	1 cut(s)	17
XapI	RAATTY	3 cut(s)	26, 43, 164
XceI	RCATGY	1 cut(s)	70
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.