Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

9985410 .. 9986130

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g15971.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGCCGCCCACCCCCTCCACCAGCCCTAGTCTTCGGCTTCCACGTCGGACTACCCCCGGCCCCCGGCACAGGCGCCGGCTTCGGTATCGACTCCGTTCAACCAGGAGACCCTTATGCAGCGACTGCAGGCCTTGATCAAGGGCGCAAGGGAAAGCTGGACCTACGCCATCTTCTGGCAGTCGTCGTACTACATGTCAGGCGCCTCCGTGCTCGGCTGGGGCGAGGGGTTCTACAAGGACGAGAGAGACAAAGTAAAAACGAAACCCAAAGCGACAACATCTCTGGTCGAGCATATGGCAGCGCCACCGACCAGGGCGAGAGCGAACGGCGTCGTCGAGGCGAGAGCGACCCGTTGTCGCTCTGGATCAACGACAACTCGTCCAGCACAATCAAAGTCGTCAAAGAATCAGTCAGCATAGCTCCGGCGACTTTAGGACCCAGTACCAGTAACCATCACATCTCCAAGAATCCGATTCCGTTCGACAATGACCACCTTAGCTCCAGTGGCTTATCAGAGATTGGTTTTTGGATTGGGTGGAGGCCGGCGAGAGAGAGGCGGAGCTTGAGGCGGAGGATGGGTTGGGAGAGGGAGAAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009718 GO:0009719 GO:0009725 GO:0009753 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042440 GO:0042538 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043425 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046872 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

201

Amino Acids

21.88

Weight (kDa)

10.78

Isoelectric Point (pI)

71.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	74, 201
AccB7I	CCANNNNNTGG	1 cut(s)	175
AciI	CCGC	3 cut(s)	7, 559, 571
AclWI	GGATC	1 cut(s)	374
AcyI	GRCGYC	3 cut(s)	75, 202, 331
AfaI	GTAC	2 cut(s)	189, 445
AfiI	CCNNNNNNNGG	3 cut(s)	65, 71, 175
AflIII	ACRYGT	1 cut(s)	193
AgsI	TTSAA	1 cut(s)	101
AhdI	GACNNNNNGTC	2 cut(s)	355, 379
AjiI	CACGTC	1 cut(s)	46
AjnI	CCWGG	2 cut(s)	103, 312
AluBI	AGCT	4 cut(s)	157, 422, 501, 564
AluI	AGCT	4 cut(s)	157, 422, 501, 564
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	2 cut(s)	102, 241
AlwI	GGATC	1 cut(s)	374
AlwNI	CAGNNNCTG	1 cut(s)	125
AoxI	GGCC	4 cut(s)	4, 60, 130, 542
ApeKI	GCWGC	2 cut(s)	119, 300
ArsI	GACNNNNNNTTYG	2 cut(s)	396, 428
AspLEI	GCGC	4 cut(s)	77, 147, 204, 305
AspS9I	GGNCC	4 cut(s)	4, 61, 160, 437
AsuC2I	CCSGG	2 cut(s)	59, 66
AvaII	GGWCC	2 cut(s)	160, 437
BanI	GGYRCC	2 cut(s)	74, 201
BbsI	GAAGAC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	2 cut(s)	131, 312
BccI	CCATC	3 cut(s)	177, 462, 571
BceAI	ACGGC	1 cut(s)	344
BciT130I	CCWGG	2 cut(s)	105, 314
BclI	TGATCA	1 cut(s)	136
BcnI	CCSGG	2 cut(s)	59, 66
BcoDI	GTCTC	2 cut(s)	102, 241
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	126
BfoI	RGCGCY	3 cut(s)	78, 205, 306
BglII	AGATCT	1 cut(s)	597
BisI	GCNGC	3 cut(s)	7, 120, 301
BlsI	GCNGC	3 cut(s)	8, 121, 302
Bme1390I	CCNGG	4 cut(s)	59, 66, 105, 314
Bme18I	GGWCC	2 cut(s)	160, 437
BmeRI	GACNNNNNGTC	2 cut(s)	355, 379
BmgBI	CACGTC	1 cut(s)	46
BmgT120I	GGNCC	4 cut(s)	4, 61, 160, 437
BmiI	GGNNCC	4 cut(s)	63, 76, 203, 439
BmrFI	CCNGG	4 cut(s)	59, 66, 105, 314
BmrI	ACTGGG	1 cut(s)	435
BmuI	ACTGGG	1 cut(s)	435
BpiI	GAAGAC	1 cut(s)	25
BpmI	CTGGAG	1 cut(s)	487
Bpu10I	CCTNAGC	1 cut(s)	497
BpuEI	CTTGAG	1 cut(s)	586
BpuMI	CCSGG	2 cut(s)	59, 66
BsaHI	GRCGYC	3 cut(s)	75, 202, 331
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	3 cut(s)	57, 64, 313
BsaXI	ACNNNNNCTCC	4 cut(s)	485, 515, 565, 595
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 71, 175
Bse118I	RCCGGY	2 cut(s)	77, 544
Bse1I	ACTGG	3 cut(s)	441, 447, 504
BseBI	CCWGG	2 cut(s)	105, 314
BseDI	CCNNGG	3 cut(s)	57, 64, 313
BseGI	GGATG	1 cut(s)	582
BseLI	CCNNNNNNNGG	3 cut(s)	65, 71, 175
BseNI	ACTGG	3 cut(s)	441, 447, 504
BseXI	GCAGC	2 cut(s)	131, 312
BseYI	CCCAGC	1 cut(s)	217
BshFI	GGCC	4 cut(s)	6, 62, 132, 544
BshNI	GGYRCC	2 cut(s)	74, 201
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	5 cut(s)	59, 66, 78, 425, 545
BslI	CCNNNNNNNGG	3 cut(s)	65, 71, 175
BsmAI	GTCTC	2 cut(s)	102, 241
BsnI	GGCC	4 cut(s)	6, 62, 132, 544
Bso31I	GGTCTC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	3 cut(s)	136, 366, 597
BspACI	CCGC	3 cut(s)	7, 559, 571
BspANI	GGCC	4 cut(s)	6, 62, 132, 544
BspLI	GGNNCC	4 cut(s)	63, 76, 203, 439
BspMAI	CTGCAG	1 cut(s)	130
BspPI	GGATC	1 cut(s)	374
BspT107I	GGYRCC	2 cut(s)	74, 201
BspTNI	GGTCTC	1 cut(s)	102
BsrFI	RCCGGY	2 cut(s)	77, 544
BsrI	ACTGG	3 cut(s)	441, 447, 504
BssAI	RCCGGY	2 cut(s)	77, 544
BssECI	CCNNGG	3 cut(s)	57, 64, 313
BssMI	GATC	3 cut(s)	136, 366, 597
BssNI	GRCGYC	3 cut(s)	75, 202, 331
Bst2UI	CCWGG	2 cut(s)	105, 314
BstACI	GRCGYC	3 cut(s)	75, 202, 331
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstC8I	GCNNGC	3 cut(s)	79, 130, 546
BstDEI	CTNAG	1 cut(s)	497
BstF5I	GGATG	1 cut(s)	582
BstH2I	RGCGCY	3 cut(s)	78, 205, 306
BstHHI	GCGC	4 cut(s)	77, 147, 204, 305
BstKTI	GATC	3 cut(s)	139, 369, 600
BstMAI	GTCTC	2 cut(s)	102, 241
BstMBI	GATC	3 cut(s)	136, 366, 597
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 507
BstNI	CCWGG	2 cut(s)	105, 314
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	4 cut(s)	57, 64, 103, 312
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	131, 312
BstV2I	GAAGAC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	597
BstYI	RGATCY	1 cut(s)	597
BsuRI	GGCC	4 cut(s)	6, 62, 132, 544
BtrI	CACGTC	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	582
BtsIMutI	CAGTG	1 cut(s)	511
Cac8I	GCNNGC	3 cut(s)	79, 130, 546
CaiI	CAGNNNCTG	1 cut(s)	125
CfoI	GCGC	4 cut(s)	77, 147, 204, 305
Cfr10I	RCCGGY	2 cut(s)	77, 544
Cfr13I	GGNCC	4 cut(s)	4, 61, 160, 437
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	2 cut(s)	188, 444
CviAII	CATG	1 cut(s)	194
CviQI	GTAC	2 cut(s)	188, 444
DdeI	CTNAG	1 cut(s)	497
DinI	GGCGCC	2 cut(s)	76, 203
DpnI	GATC	3 cut(s)	138, 368, 599
DpnII	GATC	3 cut(s)	136, 366, 597
DriI	GACNNNNNGTC	2 cut(s)	355, 379
Eam1105I	GACNNNNNGTC	2 cut(s)	355, 379
EciI	GGCGGA	2 cut(s)	574, 586
Eco147I	AGGCCT	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	102
Eco47I	GGWCC	2 cut(s)	160, 437
EcoO109I	RGGNCCY	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	103, 312
EgeI	GGCGCC	2 cut(s)	76, 203
EheI	GGCGCC	2 cut(s)	76, 203
FaeI	CATG	1 cut(s)	197
FaiI	YATR	5 cut(s)	117, 195, 295, 297, 419
FatI	CATG	1 cut(s)	193
FauNDI	CATATG	1 cut(s)	295
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	3 cut(s)	7, 120, 301
FokI	GGATG	1 cut(s)	589
Fsp4HI	GCNGC	3 cut(s)	7, 120, 301
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	4 cut(s)	76, 146, 203, 304
GluI	GCNGC	3 cut(s)	7, 120, 301
GsaI	CCCAGC	1 cut(s)	221
GsuI	CTGGAG	1 cut(s)	487
HaeII	RGCGCY	3 cut(s)	78, 205, 306
HaeIII	GGCC	4 cut(s)	6, 62, 132, 544
HapII	CCGG	5 cut(s)	59, 66, 78, 425, 545
HgaI	GACGC	1 cut(s)	320
HhaI	GCGC	4 cut(s)	77, 147, 204, 305
Hin1I	GRCGYC	3 cut(s)	75, 202, 331
Hin1II	CATG	1 cut(s)	197
Hin6I	GCGC	4 cut(s)	75, 145, 202, 303
HinP1I	GCGC	4 cut(s)	75, 145, 202, 303
HinfI	GANTC	4 cut(s)	92, 407, 469, 475
HpaII	CCGG	5 cut(s)	59, 66, 78, 425, 545
Hpy188I	TCNGA	4 cut(s)	50, 474, 517, 602
Hpy188III	TCNNGA	1 cut(s)	364
Hpy99I	CGWCG	4 cut(s)	50, 188, 336, 339
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	2 cut(s)	119, 128
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 507
HpyF3I	CTNAG	1 cut(s)	497
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	3 cut(s)	75, 202, 331
Hsp92II	CATG	1 cut(s)	197
HspAI	GCGC	4 cut(s)	75, 145, 202, 303
KasI	GGCGCC	2 cut(s)	74, 201
KroI	GCCGGC	2 cut(s)	77, 544
KroNI	GCCGGC	2 cut(s)	79, 546
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	136, 366, 597
LmnI	GCTCC	3 cut(s)	427, 506, 561
Lsp1109I	GCAGC	2 cut(s)	131, 312
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	3 cut(s)	138, 368, 599
MboI	GATC	3 cut(s)	136, 366, 597
MboII	GAAGA	2 cut(s)	25, 164
MflI	RGATCY	1 cut(s)	597
MhlI	GDGCHC	1 cut(s)	214
Mly113I	GGCGCC	2 cut(s)	75, 202
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	28
MnlI	CCTC	9 cut(s)	27, 215, 218, 332, 534, 549, 561, 567, 582
MroNI	GCCGGC	2 cut(s)	77, 544
MspI	CCGG	5 cut(s)	59, 66, 78, 425, 545
MspR9I	CCNGG	4 cut(s)	59, 66, 105, 314
MvaI	CCWGG	2 cut(s)	105, 314
MwoI	GCNNNNNNNGC	2 cut(s)	125, 507
NaeI	GCCGGC	2 cut(s)	79, 546
NarI	GGCGCC	2 cut(s)	75, 202
NciI	CCSGG	2 cut(s)	59, 66
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	3 cut(s)	136, 366, 597
NgoMIV	GCCGGC	2 cut(s)	77, 544
NlaIII	CATG	1 cut(s)	197
NlaIV	GGNNCC	4 cut(s)	63, 76, 203, 439
NmeAIII	GCCGAG	1 cut(s)	193
NspI	RCATGY	1 cut(s)	197
PceI	AGGCCT	1 cut(s)	132
PciI	ACATGT	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	3 cut(s)	42, 220, 334
PdiI	GCCGGC	2 cut(s)	79, 546
PfeI	GAWTC	3 cut(s)	407, 469, 475
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	3 cut(s)	8, 121, 302
PleI	GAGTC	1 cut(s)	86
PluTI	GGCGCC	2 cut(s)	78, 205
PpsI	GAGTC	1 cut(s)	86
PpuMI	RGGWCCY	1 cut(s)	437
PscI	ACATGT	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	437
Psp6I	CCWGG	2 cut(s)	103, 312
PspFI	CCCAGC	1 cut(s)	217
PspGI	CCWGG	2 cut(s)	103, 312
PspN4I	GGNNCC	4 cut(s)	63, 76, 203, 439
PspPI	GGNCC	4 cut(s)	4, 61, 160, 437
PspPPI	RGGWCCY	1 cut(s)	437
PstI	CTGCAG	1 cut(s)	130
PstNI	CAGNNNCTG	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	597
RsaI	GTAC	2 cut(s)	189, 445
RsaNI	GTAC	2 cut(s)	188, 444
SatI	GCNGC	3 cut(s)	7, 120, 301
Sau3AI	GATC	3 cut(s)	136, 366, 597
Sau96I	GGNCC	4 cut(s)	4, 61, 160, 437
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	4 cut(s)	59, 66, 105, 314
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	7 cut(s)	48, 159, 165, 424, 498, 503, 566
SfcI	CTRYAG	1 cut(s)	126
SfoI	GGCGCC	2 cut(s)	76, 203
SinI	GGWCC	2 cut(s)	160, 437
SmlI	CTYRAG	1 cut(s)	565
SmoI	CTYRAG	1 cut(s)	565
SseBI	AGGCCT	1 cut(s)	132
SsiI	CCGC	3 cut(s)	7, 559, 571
SspDI	GGCGCC	2 cut(s)	74, 201
SspMI	CTAG	1 cut(s)	29
StuI	AGGCCT	1 cut(s)	132
StyD4I	CCNGG	4 cut(s)	57, 64, 103, 312
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	4 cut(s)	90, 289, 337, 483
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	3 cut(s)	407, 469, 475
TscAI	CASTG	1 cut(s)	511
TseI	GCWGC	2 cut(s)	119, 300
TspGWI	ACGGA	3 cut(s)	85, 197, 468
TspRI	CASTG	1 cut(s)	511
Van91I	CCANNNNNTGG	1 cut(s)	175
VpaK11BI	GGWCC	2 cut(s)	160, 437
XceI	RCATGY	1 cut(s)	197
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.