Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

26871131 .. 26872077

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g33930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGTGGGTAAAATGTCCAAGATATCCTCCAGCCCAATAAAGCTTTGGGCTTTTCTTTGGCGGGCTGGTGGCCATGTATTGGCAGCAGGCGTTTCTCTGGGAAGCTGCATTGAAGGCGGCGTATCGGGTCTGGAGAGGGATTTGGGGTTTTTCCAAGGGGTCGGGGCGAAATATAGGATCACTGCTGAGGCCTCGGACGTTGCGGATGTTCTCAATGTGAGTTCAGGCACTGTTGCTGAAAATATTGGATATAAGGATCTGATGACAAAAATTGACATGAAAATGGTAGAAGATGCAGCAAGAACTGCAAATGCAGATGAGTTTATCATGAAACTTCCAGAAGGATACAATACCAACATTGGACCAAGGGGTTCAACTTTGAGTGGAGGTCAGAAGCAAAGACTAGCTATTGCAAGGGCTTTCTATCACAATTCTTCGATATTGATTTTGGATGAAGCCACTTCTGCTTTAATAGCAGGTCTGAGATTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

165

Amino Acids

17.49

Weight (kDa)

7.85

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	78 - 155	5.5e-12	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	467
AccB7I	CCANNNNNTGG	1 cut(s)	79
AciI	CCGC	3 cut(s)	61, 117, 203
AclWI	GGATC	2 cut(s)	185, 264
AcoI	YGGCCR	1 cut(s)	70
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	113, 375
AluBI	AGCT	3 cut(s)	43, 105, 407
AluI	AGCT	3 cut(s)	43, 105, 407
AlwI	GGATC	2 cut(s)	185, 264
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	2 cut(s)	70, 189
ApeKI	GCWGC	3 cut(s)	83, 105, 296
AspS9I	GGNCC	1 cut(s)	362
AvaII	GGWCC	1 cut(s)	362
BalI	TGGCCA	1 cut(s)	72
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	3 cut(s)	92, 95, 308
BciVI	GTATCC	1 cut(s)	338
BfaI	CTAG	1 cut(s)	404
BfuAI	ACCTGC	1 cut(s)	467
BfuI	GTATCC	1 cut(s)	338
BisI	GCNGC	4 cut(s)	84, 106, 118, 297
BlsI	GCNGC	4 cut(s)	85, 107, 119, 298
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	362
BmsI	GCATC	1 cut(s)	283
BpmI	CTGGAG	2 cut(s)	13, 152
Bpu10I	CCTNAGC	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	154, 192, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
BseDI	CCNNGG	3 cut(s)	154, 192, 365
BseGI	GGATG	2 cut(s)	211, 457
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMII	CTCAG	2 cut(s)	177, 473
BseXI	GCAGC	3 cut(s)	92, 95, 308
BshFI	GGCC	2 cut(s)	72, 191
BslI	CCNNNNNNNGG	1 cut(s)	79
BsnI	GGCC	2 cut(s)	72, 191
Bsp143I	GATC	2 cut(s)	177, 256
BspACI	CCGC	3 cut(s)	61, 117, 203
BspANI	GGCC	2 cut(s)	72, 191
BspCNI	CTCAG	2 cut(s)	178, 474
BspHI	TCATGA	1 cut(s)	327
BspMI	ACCTGC	1 cut(s)	467
BspPI	GGATC	2 cut(s)	185, 264
BssECI	CCNNGG	3 cut(s)	154, 192, 365
BssMI	GATC	2 cut(s)	177, 256
BssT1I	CCWWGG	2 cut(s)	154, 365
Bst4CI	ACNGT	1 cut(s)	232
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	63, 88
BstDEI	CTNAG	2 cut(s)	186, 482
BstF5I	GGATG	2 cut(s)	211, 457
BstKTI	GATC	2 cut(s)	180, 259
BstMBI	GATC	2 cut(s)	177, 256
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 305, 464, 473
BstV1I	GCAGC	3 cut(s)	92, 95, 308
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuI	GTATCC	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	72, 191
BtsCI	GGATG	2 cut(s)	211, 457
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	180, 228
BveI	ACCTGC	1 cut(s)	467
Cac8I	GCNNGC	2 cut(s)	63, 88
CaiI	CAGNNNCTG	1 cut(s)	230
CciI	TCATGA	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	362
CviAII	CATG	3 cut(s)	74, 277, 328
DdeI	CTNAG	2 cut(s)	186, 482
DpnI	GATC	2 cut(s)	179, 258
DpnII	GATC	2 cut(s)	177, 256
EaeI	YGGCCR	1 cut(s)	70
Eco130I	CCWWGG	2 cut(s)	154, 365
Eco147I	AGGCCT	1 cut(s)	191
Eco32I	GATATC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	362
EcoRV	GATATC	1 cut(s)	24
EcoT14I	CCWWGG	2 cut(s)	154, 365
ErhI	CCWWGG	2 cut(s)	154, 365
FaeI	CATG	3 cut(s)	77, 280, 331
FaiI	YATR	5 cut(s)	75, 174, 252, 278, 329
FatI	CATG	3 cut(s)	73, 276, 327
FauI	CCCGC	1 cut(s)	54
Fnu4HI	GCNGC	4 cut(s)	84, 106, 118, 297
FokI	GGATG	2 cut(s)	218, 464
Fsp4HI	GCNGC	4 cut(s)	84, 106, 118, 297
FspBI	CTAG	1 cut(s)	404
GluI	GCNGC	4 cut(s)	84, 106, 118, 297
GsuI	CTGGAG	2 cut(s)	13, 152
HaeIII	GGCC	2 cut(s)	72, 191
Hin1II	CATG	3 cut(s)	77, 280, 331
HindIII	AAGCTT	1 cut(s)	41
Hpy188I	TCNGA	4 cut(s)	196, 261, 393, 483
Hpy188III	TCNNGA	3 cut(s)	131, 328, 338
HpyAV	CCTTC	2 cut(s)	107, 335
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	5 cut(s)	108, 296, 308, 314, 413
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 305, 464, 473
HpyF3I	CTNAG	2 cut(s)	186, 482
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	3 cut(s)	77, 280, 331
Kzo9I	GATC	2 cut(s)	177, 256
LpnPI	CCDG	8 cut(s)	43, 51, 72, 83, 116, 210, 351, 462
Lsp1109I	GCAGC	3 cut(s)	92, 95, 308
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	404
MaeII	ACGT	1 cut(s)	198
MalI	GATC	2 cut(s)	179, 258
MboI	GATC	2 cut(s)	177, 256
MboII	GAAGA	2 cut(s)	302, 426
MflI	RGATCY	1 cut(s)	256
MlsI	TGGCCA	1 cut(s)	72
MluCI	AATT	2 cut(s)	270, 430
MluNI	TGGCCA	1 cut(s)	72
MnlI	CCTC	5 cut(s)	37, 129, 181, 202, 380
Mox20I	TGGCCA	1 cut(s)	72
MscI	TGGCCA	1 cut(s)	72
MseI	TTAA	1 cut(s)	470
MslI	CAYNNNNRTG	1 cut(s)	281
Msp20I	TGGCCA	1 cut(s)	72
MwoI	GCNNNNNNNGC	4 cut(s)	114, 305, 464, 473
NdeII	GATC	2 cut(s)	177, 256
NlaIII	CATG	3 cut(s)	77, 280, 331
PagI	TCATGA	1 cut(s)	327
PceI	AGGCCT	1 cut(s)	191
PflMI	CCANNNNNTGG	1 cut(s)	79
PkrI	GCNGC	4 cut(s)	85, 107, 119, 298
PspPI	GGNCC	1 cut(s)	362
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	4 cut(s)	84, 106, 118, 297
Sau3AI	GATC	2 cut(s)	177, 256
Sau96I	GGNCC	1 cut(s)	362
SetI	ASST	6 cut(s)	45, 107, 201, 391, 409, 481
SfaNI	GCATC	1 cut(s)	283
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	281
Sse9I	AATT	2 cut(s)	270, 430
SseBI	AGGCCT	1 cut(s)	191
SsiI	CCGC	3 cut(s)	61, 117, 203
SspI	AATATT	1 cut(s)	244
SspMI	CTAG	1 cut(s)	404
StuI	AGGCCT	1 cut(s)	191
StyI	CCWWGG	2 cut(s)	154, 365
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	1 cut(s)	437
TasI	AATT	2 cut(s)	270, 430
TauI	GCSGC	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TscAI	CASTG	2 cut(s)	187, 235
TseI	GCWGC	3 cut(s)	83, 105, 296
TspDTI	ATGAA	3 cut(s)	293, 344, 468
TspRI	CASTG	2 cut(s)	187, 235
Van91I	CCANNNNNTGG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	362
XcmI	CCANNNNNNNNNTGG	1 cut(s)	42
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.