Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

36417119 .. 36418655

Gene Structure 1537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCAGAGACAGTAGCCGCCGCTCCCAGTTCCTCCAAGACGGAGTCTTATGTCGACAACAAGCGCAAGGAGGATGTCCGCCAGGCCAACATCCTTGCCCTCAGCACCGTCGCTGACGCCATCCGCACCAGACTCGGCCCCAGAGGCATGGACAAGAATCACAAGATGATCTCCACCGCTTCCGGTGACGTCATCCTCATCACCAACGACGGCACCACCACCTTCGTCGTCATCGCCGGCGCCCTGTTGAAACAGTGCCTCGTCCTTCTCTCCCACGGCATCCATCCCACCGTCATCTCCGACTCCCTCCACAAGATCGCCATCAACGCCGTCGATGTCCTCACCGCCATGGCCTGCACCGTCGAGCTCTCCGACCGCGACGCCCTCGTCAAATCCACGCTCAACAGCAAGGTCGTCAGTCAGTACTCGAGGCTTCTGGCGCCGCAGGCGGTGGACGCCGTGCTCTCTGTGGTGGACCCGGCCAAGCCGGAGATTGTGGACCTGAGGGACATCAAGATCGTGAAGAAGCTCGGCGGAACCGTGGATGATACCGAGACTGTGAAGGGGCTGGTTTTCGATAAGAAGACCAGTCATGCTGGTGGTGGTCCAACGAGGATGGAGAAGGCCAAGATTGCTGTGATTCAGTTCCAGATTTCGCCTCCGAAAACTAACATTAAGCAGATAAATAGGATTTCGAAGGAGGAGAGGAATTACATTCTCAGTATGATTAAGAAGATCAAGTCCACTGGCTGCAATGTTCTGCTGATTCAGAAGAGTATTTTGAGGGACGCAGTGACTGATCGGTCGTTGCATTACTTGGCCAAAGCCAAGATTTTGGTGATTAAGGATGTGGAGAGGGATGAGATTGAGTTTATTACCAAGACTCTGAATTGCTTGCCCATTGCGAATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0032991 GO:0042221 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

305

Amino Acids

33.06

Weight (kDa)

9.36

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	55 - 302	2.7e-50	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	386, 802
AatII	GACGTC	1 cut(s)	192
AccB1I	GGYRCC	3 cut(s)	212, 239, 439
AccBSI	CCGCTC	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	1 cut(s)	378
AcoI	YGGCCR	2 cut(s)	480, 819
AcyI	GRCGYC	6 cut(s)	117, 189, 240, 381, 440, 456
AfaI	GTAC	1 cut(s)	425
AgsI	TTSAA	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	2 cut(s)	367, 529
AluI	AGCT	2 cut(s)	367, 529
Alw21I	GWGCWC	2 cut(s)	369, 465
Alw26I	GTCTC	2 cut(s)	2, 548
AlwNI	CAGNNNCTG	1 cut(s)	797
Ama87I	CYCGRG	1 cut(s)	427
AoxI	GGCC	6 cut(s)	84, 136, 351, 480, 624, 819
ApeKI	GCWGC	1 cut(s)	750
AspLEI	GCGC	3 cut(s)	66, 242, 442
AspS9I	GGNCC	4 cut(s)	137, 475, 499, 605
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	4 cut(s)	193, 197, 334, 850
AsuII	TTCGAA	1 cut(s)	695
AvaI	CYCGRG	1 cut(s)	427
AvaII	GGWCC	3 cut(s)	475, 499, 605
AxyI	CCTNAGG	1 cut(s)	503
BalI	TGGCCA	1 cut(s)	821
BanI	GGYRCC	3 cut(s)	212, 239, 439
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	590
Bbv12I	GWGCWC	2 cut(s)	369, 465
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	737
BccI	CCATC	4 cut(s)	128, 291, 329, 610
BceAI	ACGGC	4 cut(s)	226, 292, 314, 443
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciT130I	CCWGG	1 cut(s)	83
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	2 cut(s)	2, 548
BfaI	CTAG	1 cut(s)	913
BfoI	RGCGCY	2 cut(s)	243, 443
BglI	GCCNNNNNGGC	1 cut(s)	144
BisI	GCNGC	4 cut(s)	18, 21, 443, 751
BlsI	GCNGC	4 cut(s)	19, 22, 444, 752
BmcAI	AGTACT	1 cut(s)	425
Bme1390I	CCNGG	2 cut(s)	83, 479
Bme18I	GGWCC	3 cut(s)	475, 499, 605
BmeT110I	CYCGRG	1 cut(s)	427
BmgT120I	GGNCC	4 cut(s)	137, 475, 499, 605
BmiI	GGNNCC	6 cut(s)	139, 214, 241, 441, 477, 538
BmrFI	CCNGG	2 cut(s)	83, 479
BmrI	ACTGGG	1 cut(s)	21
BmsI	GCATC	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	590
Bpu10I	CCTNAGC	1 cut(s)	101
Bpu14I	TTCGAA	1 cut(s)	695
BpuMI	CCSGG	1 cut(s)	479
BsaBI	GATNNNNATC	1 cut(s)	320
BsaHI	GRCGYC	6 cut(s)	117, 189, 240, 381, 440, 456
BsaJI	CCNNGG	3 cut(s)	274, 348, 540
BsaWI	WCCGGW	1 cut(s)	182
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	3 cut(s)	27, 588, 751
Bse21I	CCTNAGG	1 cut(s)	503
Bse3DI	GCAATG	2 cut(s)	760, 900
Bse8I	GATNNNNATC	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	3 cut(s)	274, 348, 540
BseJI	GATNNNNATC	1 cut(s)	320
BseMI	GCAATG	2 cut(s)	760, 900
BseMII	CTCAG	3 cut(s)	115, 494, 733
BseNI	ACTGG	3 cut(s)	27, 588, 751
BseRI	GAGGAG	1 cut(s)	716
BseXI	GCAGC	1 cut(s)	737
BsgI	GTGCAG	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	378
Bsh1285I	CGRYCG	2 cut(s)	376, 806
BshFI	GGCC	6 cut(s)	86, 138, 353, 482, 626, 821
BshNI	GGYRCC	3 cut(s)	212, 239, 439
BsiEI	CGRYCG	2 cut(s)	376, 806
BsiHKAI	GWGCWC	2 cut(s)	369, 465
BsiHKCI	CYCGRG	1 cut(s)	427
BsiSI	CCGG	4 cut(s)	183, 237, 479, 488
BslFI	GGGAC	2 cut(s)	521, 800
BsmAI	GTCTC	2 cut(s)	2, 548
BsmFI	GGGAC	2 cut(s)	521, 800
BsnI	GGCC	6 cut(s)	86, 138, 353, 482, 626, 821
BsoBI	CYCGRG	1 cut(s)	427
Bsp119I	TTCGAA	1 cut(s)	695
Bsp1286I	GDGCHC	2 cut(s)	369, 465
Bsp143I	GATC	5 cut(s)	168, 315, 516, 735, 799
Bsp19I	CCATGG	1 cut(s)	348
BspANI	GGCC	6 cut(s)	86, 138, 353, 482, 626, 821
BspCNI	CTCAG	3 cut(s)	114, 495, 732
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	6 cut(s)	139, 214, 241, 441, 477, 538
BspT104I	TTCGAA	1 cut(s)	695
BspT107I	GGYRCC	3 cut(s)	212, 239, 439
BsrBI	CCGCTC	1 cut(s)	23
BsrDI	GCAATG	2 cut(s)	760, 900
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	3 cut(s)	27, 588, 751
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	3 cut(s)	274, 348, 540
BssMI	GATC	5 cut(s)	168, 315, 516, 735, 799
BssNI	GRCGYC	6 cut(s)	117, 189, 240, 381, 440, 456
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	7 cut(s)	13, 109, 255, 292, 361, 541, 559
Bst6I	CTCTTC	1 cut(s)	767
BstACI	GRCGYC	6 cut(s)	117, 189, 240, 381, 440, 456
BstBI	TTCGAA	1 cut(s)	695
BstC8I	GCNNGC	4 cut(s)	238, 355, 447, 896
BstDEI	CTNAG	3 cut(s)	101, 503, 719
BstDSI	CCRYGG	3 cut(s)	274, 348, 540
BstFNI	CGCG	1 cut(s)	378
BstH2I	RGCGCY	2 cut(s)	243, 443
BstHHI	GCGC	3 cut(s)	66, 242, 442
BstKTI	GATC	5 cut(s)	171, 318, 519, 738, 802
BstMAI	GTCTC	2 cut(s)	2, 548
BstMBI	GATC	5 cut(s)	168, 315, 516, 735, 799
BstMCI	CGRYCG	2 cut(s)	376, 806
BstMWI	GCNNNNNNNGC	6 cut(s)	144, 326, 439, 446, 455, 632
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	2 cut(s)	81, 477
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	1 cut(s)	737
BstV2I	GAAGAC	1 cut(s)	590
BstXI	CCANNNNNNTGG	2 cut(s)	148, 835
Bsu36I	CCTNAGG	1 cut(s)	503
BsuRI	GGCC	6 cut(s)	86, 138, 353, 482, 626, 821
BtgI	CCRYGG	3 cut(s)	274, 348, 540
BtgZI	GCGATG	1 cut(s)	217
BtsI	GCAGTG	1 cut(s)	798
BtsIMutI	CAGTG	3 cut(s)	260, 744, 798
Cac8I	GCNNGC	4 cut(s)	238, 355, 447, 896
CaiI	CAGNNNCTG	1 cut(s)	797
CfoI	GCGC	3 cut(s)	66, 242, 442
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	4 cut(s)	137, 475, 499, 605
CseI	GACGC	4 cut(s)	125, 389, 464, 797
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	3 cut(s)	148, 349, 593
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	3 cut(s)	101, 503, 719
DinI	GGCGCC	2 cut(s)	241, 441
DpnI	GATC	5 cut(s)	170, 317, 518, 737, 801
DpnII	GATC	5 cut(s)	168, 315, 516, 735, 799
DrdI	GACNNNNNNGTC	2 cut(s)	386, 802
DseDI	GACNNNNNNGTC	2 cut(s)	386, 802
EaeI	YGGCCR	2 cut(s)	480, 819
Eam1104I	CTCTTC	1 cut(s)	767
EarI	CTCTTC	1 cut(s)	767
EciI	GGCGGA	2 cut(s)	68, 549
Ecl136II	GAGCTC	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	369
Eco47I	GGWCC	3 cut(s)	475, 499, 605
Eco53kI	GAGCTC	1 cut(s)	367
Eco81I	CCTNAGG	1 cut(s)	503
Eco88I	CYCGRG	1 cut(s)	427
EcoICRI	GAGCTC	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	369
EgeI	GGCGCC	2 cut(s)	241, 441
EheI	GGCGCC	2 cut(s)	241, 441
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	3 cut(s)	151, 352, 596
FaiI	YATR	5 cut(s)	51, 149, 350, 594, 725
FaqI	GGGAC	2 cut(s)	521, 800
FatI	CATG	3 cut(s)	147, 348, 592
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	4 cut(s)	18, 21, 443, 751
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	4 cut(s)	18, 21, 443, 751
FspBI	CTAG	1 cut(s)	913
GlaI	GCGC	3 cut(s)	65, 241, 441
GluI	GCNGC	4 cut(s)	18, 21, 443, 751
HaeII	RGCGCY	2 cut(s)	243, 443
HaeIII	GGCC	6 cut(s)	86, 138, 353, 482, 626, 821
HapII	CCGG	4 cut(s)	183, 237, 479, 488
HgaI	GACGC	4 cut(s)	125, 389, 464, 797
HhaI	GCGC	3 cut(s)	66, 242, 442
Hin1I	GRCGYC	6 cut(s)	117, 189, 240, 381, 440, 456
Hin1II	CATG	3 cut(s)	151, 352, 596
Hin6I	GCGC	3 cut(s)	64, 240, 440
HinP1I	GCGC	3 cut(s)	64, 240, 440
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	7 cut(s)	44, 132, 157, 302, 640, 766, 883
HpaII	CCGG	4 cut(s)	183, 237, 479, 488
HphI	GGTGA	4 cut(s)	193, 197, 334, 850
Hpy166II	GTNNAC	5 cut(s)	55, 454, 475, 499, 744
Hpy188I	TCNGA	5 cut(s)	301, 373, 663, 771, 888
Hpy188III	TCNNGA	3 cut(s)	514, 520, 649
Hpy8I	GTNNAC	5 cut(s)	55, 454, 475, 499, 744
Hpy99I	CGWCG	6 cut(s)	113, 212, 230, 335, 365, 383
HpyAV	CCTTC	5 cut(s)	232, 275, 556, 616, 691
HpyCH4III	ACNGT	7 cut(s)	13, 109, 255, 292, 361, 541, 559
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	3 cut(s)	357, 753, 811
HpyF10VI	GCNNNNNNNGC	6 cut(s)	144, 326, 439, 446, 455, 632
HpyF3I	CTNAG	3 cut(s)	101, 503, 719
HpySE526I	ACGT	1 cut(s)	189
Hsp92I	GRCGYC	6 cut(s)	117, 189, 240, 381, 440, 456
Hsp92II	CATG	3 cut(s)	151, 352, 596
HspAI	GCGC	3 cut(s)	64, 240, 440
KasI	GGCGCC	2 cut(s)	239, 439
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
Kzo9I	GATC	5 cut(s)	168, 315, 516, 735, 799
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	1 cut(s)	737
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	1 cut(s)	913
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	185, 793
MalI	GATC	5 cut(s)	170, 317, 518, 737, 801
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	5 cut(s)	168, 315, 516, 735, 799
MboII	GAAGA	4 cut(s)	535, 595, 745, 784
MhlI	GDGCHC	2 cut(s)	369, 465
MlsI	TGGCCA	1 cut(s)	821
MluCI	AATT	2 cut(s)	709, 889
MluNI	TGGCCA	1 cut(s)	821
Mly113I	GGCGCC	2 cut(s)	240, 440
MlyI	GAGTC	4 cut(s)	53, 126, 296, 877
MmeI	TCCRAC	3 cut(s)	324, 396, 632
Mox20I	TGGCCA	1 cut(s)	821
MreI	CGCCGGCG	1 cut(s)	236
MroNI	GCCGGC	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	821
MseI	TTAA	3 cut(s)	675, 729, 843
MslI	CAYNNNNRTG	2 cut(s)	347, 597
Msp20I	TGGCCA	1 cut(s)	821
MspI	CCGG	4 cut(s)	183, 237, 479, 488
MspR9I	CCNGG	2 cut(s)	83, 479
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	6 cut(s)	144, 326, 439, 446, 455, 632
NaeI	GCCGGC	1 cut(s)	238
NarI	GGCGCC	2 cut(s)	240, 440
NciI	CCSGG	1 cut(s)	479
NcoI	CCATGG	1 cut(s)	348
NdeII	GATC	5 cut(s)	168, 315, 516, 735, 799
NgoMIV	GCCGGC	1 cut(s)	236
NlaIII	CATG	3 cut(s)	151, 352, 596
NlaIV	GGNNCC	6 cut(s)	139, 214, 241, 441, 477, 538
NmeAIII	GCCGAG	2 cut(s)	114, 510
NmuCI	GTSAC	2 cut(s)	185, 793
NspV	TTCGAA	1 cut(s)	695
PaeR7I	CTCGAG	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	2 cut(s)	369, 537
PdiI	GCCGGC	1 cut(s)	238
PfeI	GAWTC	3 cut(s)	157, 640, 766
PflFI	GACNNNGTC	1 cut(s)	43
PkrI	GCNGC	4 cut(s)	19, 22, 444, 752
PleI	GAGTC	4 cut(s)	52, 126, 296, 877
PluTI	GGCGCC	2 cut(s)	243, 443
PpsI	GAGTC	4 cut(s)	52, 126, 296, 877
Psp124BI	GAGCTC	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	6 cut(s)	139, 214, 241, 441, 477, 538
PspPI	GGNCC	4 cut(s)	137, 475, 499, 605
PspXI	VCTCGAGB	1 cut(s)	427
PstNI	CAGNNNCTG	1 cut(s)	797
PsyI	GACNNNGTC	1 cut(s)	43
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	2 cut(s)	347, 597
SacI	GAGCTC	1 cut(s)	369
SalI	GTCGAC	1 cut(s)	53
SaqAI	TTAA	3 cut(s)	675, 729, 843
SatI	GCNGC	4 cut(s)	18, 21, 443, 751
Sau3AI	GATC	5 cut(s)	168, 315, 516, 735, 799
Sau96I	GGNCC	4 cut(s)	137, 475, 499, 605
ScaI	AGTACT	1 cut(s)	425
SchI	GAGTC	4 cut(s)	53, 126, 296, 877
ScrFI	CCNGG	2 cut(s)	83, 479
SduI	GDGCHC	2 cut(s)	369, 465
SetI	ASST	6 cut(s)	192, 224, 369, 414, 504, 531
SfaNI	GCATC	1 cut(s)	288
SfoI	GGCGCC	2 cut(s)	241, 441
Sfr274I	CTCGAG	1 cut(s)	427
SfuI	TTCGAA	1 cut(s)	695
SgrAI	CRCCGGYG	1 cut(s)	236
SinI	GGWCC	3 cut(s)	475, 499, 605
SlaI	CTCGAG	1 cut(s)	427
SmiMI	CAYNNNNRTG	2 cut(s)	347, 597
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	2 cut(s)	709, 889
SspDI	GGCGCC	2 cut(s)	239, 439
SspMI	CTAG	1 cut(s)	913
SstI	GAGCTC	1 cut(s)	369
StyD4I	CCNGG	2 cut(s)	81, 477
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	7 cut(s)	13, 109, 255, 292, 361, 541, 559
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	6 cut(s)	54, 333, 363, 428, 576, 695
TaqII	GACCGA	1 cut(s)	792
TasI	AATT	2 cut(s)	709, 889
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	3 cut(s)	20, 23, 445
TfiI	GAWTC	3 cut(s)	157, 640, 766
Tru1I	TTAA	3 cut(s)	675, 729, 843
Tru9I	TTAA	3 cut(s)	675, 729, 843
TscAI	CASTG	3 cut(s)	260, 751, 798
TseFI	GTSAC	2 cut(s)	185, 793
TseI	GCWGC	1 cut(s)	750
Tsp45I	GTSAC	2 cut(s)	185, 793
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	3 cut(s)	260, 751, 798
Tth111I	GACNNNGTC	1 cut(s)	43
VpaK11BI	GGWCC	3 cut(s)	475, 499, 605
XhoI	CTCGAG	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	1 cut(s)	913
ZraI	GACGTC	1 cut(s)	190
ZrmI	AGTACT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.