FvH4_7g01350

Transcription factor JUNGBRUNNEN 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
N/A
Physical Location & Seq
Forward (+)
1767199 .. 1767756
558 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g01350.t1

Sequence Viewer

Length: 258 bp
ATGATGAATGCTATGGCAGCATGTCTTTGTAGTTTAGCTGCTATACCAGGCAACGGGAAAGGTTTTAGACAAGCTGTGGAATATGACTCCGAGAGGAAGGTGGAGAATAAACCTATTCGTCTTGAGCTCATCAAACTTATTGACATCTACAAGTATGATCCATGGGATATTCCAAAAGCTAGTGATTTAGTTGGAATCAGTGGTACTTTTGCGGAACGGGAAAGAAATACAGAAATAGCACAAGACCTAATAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

86

Amino Acids

9.47

Weight (kDa)

5.04

Isoelectric Point (pI)

29.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 212
AclWI GGATC 1 cut(s) 152
AfaI GTAC 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 53
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 4 cut(s) 38, 74, 127, 179
AluI AGCT 4 cut(s) 38, 74, 127, 179
Alw21I GWGCWC 1 cut(s) 129
AlwI GGATC 1 cut(s) 152
ApeKI GCWGC 2 cut(s) 17, 38
BanII GRGCYC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 2 cut(s) 25, 29
BciT130I CCWGG 1 cut(s) 48
BfaI CTAG 1 cut(s) 180
BisI GCNGC 2 cut(s) 18, 39
BlsI GCNGC 2 cut(s) 19, 40
Bme1390I CCNGG 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 161
Bsc4I CCNNNNNNNGG 1 cut(s) 53
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 161
BseLI CCNNNNNNNGG 1 cut(s) 53
BseXI GCAGC 2 cut(s) 25, 29
BsiHKAI GWGCWC 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 53
BsmI GAATGC 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 1 cut(s) 157
Bsp19I CCATGG 1 cut(s) 161
BspACI CCGC 1 cut(s) 212
BspPI GGATC 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 161
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 1 cut(s) 48
BstNSI RCATGY 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 46
BstV1I GCAGC 2 cut(s) 25, 29
BtgI CCRYGG 1 cut(s) 161
BtsIMutI CAGTG 1 cut(s) 205
Csp6I GTAC 1 cut(s) 204
CviAII CATG 2 cut(s) 21, 162
CviJI RGCY 5 cut(s) 38, 74, 127, 179, 255
CviKI_1 RGCY 5 cut(s) 38, 74, 127, 179, 255
CviQI GTAC 1 cut(s) 204
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Ecl136II GAGCTC 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 2 cut(s) 24, 165
FaiI YATR 6 cut(s) 14, 22, 44, 84, 156, 163
FatI CATG 2 cut(s) 20, 161
Fnu4HI GCNGC 2 cut(s) 18, 39
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 2 cut(s) 18, 39
FspBI CTAG 1 cut(s) 180
GluI GCNGC 2 cut(s) 18, 39
Hin1II CATG 2 cut(s) 24, 165
HinfI GANTC 2 cut(s) 86, 195
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
Hsp92II CATG 2 cut(s) 24, 165
Kzo9I GATC 1 cut(s) 157
LpnPI CCDG 2 cut(s) 33, 60
Lsp1109I GCAGC 2 cut(s) 25, 29
MaeI CTAG 1 cut(s) 180
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 129
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 48
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 17
NcoI CCATGG 1 cut(s) 161
NdeII GATC 1 cut(s) 157
NlaIII CATG 2 cut(s) 24, 165
NspI RCATGY 1 cut(s) 24
PctI GAATGC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 195
PkrI GCNGC 2 cut(s) 19, 40
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Psp124BI GAGCTC 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SacI GAGCTC 1 cut(s) 129
SatI GCNGC 2 cut(s) 18, 39
Sau3AI GATC 1 cut(s) 157
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 48
SduI GDGCHC 1 cut(s) 129
SetI ASST 8 cut(s) 40, 64, 76, 102, 115, 129, 181, 249
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SsiI CCGC 1 cut(s) 212
SspMI CTAG 1 cut(s) 180
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 46
StyI CCWWGG 1 cut(s) 161
TfiI GAWTC 1 cut(s) 195
TscAI CASTG 1 cut(s) 205
TseI GCWGC 2 cut(s) 17, 38
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 1 cut(s) 205
XceI RCATGY 1 cut(s) 24
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.