FvH4_7g03791
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
N/A
Physical Location & Seq
Reverse (-)
4330324 .. 4332447
2124 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g03791.t1

Sequence Viewer

Length: 1014 bp
ATGCGAAAATGTGGAGTGTTTGAGGCAAAACAAGCCACTGAAGTGGTACCTATCACACTGAGTTGGTGGGAAGAGTTTAAAAAGGTCAATTATCCCTCGAAACCACCCCGGGAAGCTTCACTTGTGTGTTGGCAACGCCCTCTTGTAGGTTTTGTCAAACTCAATGTGGATGTTTCTTTTAACCATTCGGATGGCACTACAGGATTAGGTGGAAACAAAAAGGAGGCAAAAGGTTTGTATGGCAAACCGTTTGAACATTATTATGCACTTGGAGAGATATATGGAAAAGATCGTGCACTAGGAACAAATGCTAGAAATGCTGAAGATGATGAAGAAGAAGTTAGAGAAGAGGATGCAAGTATAAATCAAGCGGGTGTACGAGTTGATGATTTTTTCGAGCAAATGGAGGATATGACAACGGATGGTGGCTCTCAATATGTGGGATCAGAATATGAAGGACTTGATGAAGTGGAAAATGAATATGTGCCTTTTACACAACCAAGTCATCCCCAACCACCAAGTACCAACCAACGTGCTAAACAACCGAGGTCAACCCAAGATGTAGCAAATGCTCCAAATAAAACTCGTCGAAAGGCAAGAGCTTTAAATGATATGGCAAACAAATTTAGAGCCATCGCTGAAGCCATTTCTGGAATGGCTCCAAAGTTTGAAGGCTTGATTAACGTTCTCTCAACAGAAAAGGATCTTGCTGATCTGCAAGGGAAACTTTGTGGTGAGCTTCGGAAGATAGAATTCCTTACTCCAGTGCAAATCTCGCCCTCGTCCTTGTCCCTCTTCTTCGGGATTCCAGTAGGTCTCCTCGAGGTGCTTCCCGATGAGGAGGAAGGTCTTGACAAGCTCATCGATGCTGCAAACATTGTAATTCTACGCGATGTAGACTCCGACCACCATCGCCATGAGATTCCAGAAGGTGCTACAGAGATGACCGGCAAAAAATTGAGAGGAGAGGAGAGGTCGAAGTACTGGAGTCCGATGGCGGAGTTGCGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

338

Amino Acids

37.75

Weight (kDa)

5.08

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 821
Acc65I GGTACC 1 cut(s) 46
AccB1I GGYRCC 1 cut(s) 46
AccI GTMKAC 1 cut(s) 897
AccII CGCG 1 cut(s) 891
AciI CCGC 3 cut(s) 371, 998, 1006
AclI AACGTT 1 cut(s) 684
AclWI GGATC 2 cut(s) 451, 711
AcsI RAATTY 2 cut(s) 623, 752
AcuI CTGAAG 3 cut(s) 60, 342, 660
AfaI GTAC 4 cut(s) 48, 378, 523, 983
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 2 cut(s) 254, 671
AleI CACNNNNGTG 2 cut(s) 41, 124
AluBI AGCT 4 cut(s) 116, 602, 739, 859
AluI AGCT 4 cut(s) 116, 602, 739, 859
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 1 cut(s) 821
Alw44I GTGCAC 1 cut(s) 294
AlwI GGATC 2 cut(s) 451, 711
Ama87I CYCGRG 2 cut(s) 108, 821
ApaLI GTGCAC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 869
ApoI RAATTY 2 cut(s) 623, 752
Asp718I GGTACC 1 cut(s) 46
AsuC2I CCSGG 2 cut(s) 109, 110
AsuHPI GGTGA 1 cut(s) 746
AvaI CYCGRG 2 cut(s) 108, 821
BaeGI GKGCMC 1 cut(s) 298
BanI GGYRCC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 856
BccI CCATC 5 cut(s) 185, 416, 641, 918, 988
BcnI CCSGG 2 cut(s) 109, 110
BcoDI GTCTC 1 cut(s) 821
BfaI CTAG 2 cut(s) 299, 312
BfmI CTRYAG 2 cut(s) 198, 936
BisI GCNGC 1 cut(s) 870
BlsI GCNGC 1 cut(s) 871
BmcAI AGTACT 1 cut(s) 983
Bme1390I CCNGG 2 cut(s) 109, 110
BmeT110I CYCGRG 2 cut(s) 108, 821
BmiI GGNNCC 2 cut(s) 48, 660
BmrFI CCNGG 2 cut(s) 109, 110
BmsI GCATC 2 cut(s) 343, 856
BpmI CTGGAG 2 cut(s) 747, 1006
BpuMI CCSGG 2 cut(s) 109, 110
Bsa29I ATCGAT 1 cut(s) 864
BsaI GGTCTC 1 cut(s) 821
BsaJI CCNNGG 3 cut(s) 107, 108, 545
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse118I RCCGGY 1 cut(s) 947
Bse1I ACTGG 3 cut(s) 764, 809, 989
BseCI ATCGAT 1 cut(s) 864
BseDI CCNNGG 3 cut(s) 107, 108, 545
BseGI GGATG 5 cut(s) 175, 196, 358, 427, 505
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 3 cut(s) 764, 809, 989
BseRI GAGGAG 4 cut(s) 809, 854, 978, 983
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 1 cut(s) 856
Bsh1236I CGCG 1 cut(s) 891
BshNI GGYRCC 1 cut(s) 46
BshVI ATCGAT 1 cut(s) 864
BsiHKAI GWGCWC 1 cut(s) 298
BsiHKCI CYCGRG 2 cut(s) 108, 821
BsiSI CCGG 2 cut(s) 109, 948
BslFI GGGAC 1 cut(s) 775
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 821
BsmFI GGGAC 1 cut(s) 775
Bso31I GGTCTC 1 cut(s) 821
BsoBI CYCGRG 2 cut(s) 108, 821
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 4 cut(s) 289, 443, 703, 712
BspACI CCGC 3 cut(s) 371, 998, 1006
BspCNI CTCAG 1 cut(s) 51
BspDI ATCGAT 1 cut(s) 864
BspFNI CGCG 1 cut(s) 891
BspLI GGNNCC 2 cut(s) 48, 660
BspPI GGATC 2 cut(s) 451, 711
BspT107I GGYRCC 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 821
BsrFI RCCGGY 1 cut(s) 947
BsrI ACTGG 3 cut(s) 764, 809, 989
BssAI RCCGGY 1 cut(s) 947
BssECI CCNNGG 3 cut(s) 107, 108, 545
BssMI GATC 4 cut(s) 289, 443, 703, 712
Bst4CI ACNGT 1 cut(s) 249
Bst6I CTCTTC 3 cut(s) 66, 342, 800
BstDEI CTNAG 1 cut(s) 59
BstENI CCTNNNNNAGG 1 cut(s) 144
BstF5I GGATG 5 cut(s) 175, 196, 358, 427, 505
BstFNI CGCG 1 cut(s) 891
BstKTI GATC 4 cut(s) 292, 446, 706, 715
BstMAI GTCTC 1 cut(s) 821
BstMBI GATC 4 cut(s) 289, 443, 703, 712
BstMWI GCNNNNNNNGC 3 cut(s) 32, 317, 775
BstSCI CCNGG 2 cut(s) 107, 108
BstSFI CTRYAG 2 cut(s) 198, 936
BstSLI GKGCMC 1 cut(s) 298
BstUI CGCG 1 cut(s) 891
BstV1I GCAGC 1 cut(s) 856
BstX2I RGATCY 1 cut(s) 703
BstXI CCANNNNNNTGG 2 cut(s) 43, 191
BstYI RGATCY 1 cut(s) 703
Bsu15I ATCGAT 1 cut(s) 864
BsuTUI ATCGAT 1 cut(s) 864
BtgZI GCGATG 3 cut(s) 619, 896, 906
BtsCI GGATG 5 cut(s) 175, 196, 358, 427, 505
BtsIMutI CAGTG 3 cut(s) 36, 56, 771
Cfr10I RCCGGY 1 cut(s) 947
Cfr9I CCCGGG 1 cut(s) 108
ClaI ATCGAT 1 cut(s) 864
Csp6I GTAC 4 cut(s) 47, 377, 522, 982
CviAII CATG 1 cut(s) 917
CviQI GTAC 4 cut(s) 47, 377, 522, 982
DdeI CTNAG 1 cut(s) 59
DpnI GATC 4 cut(s) 291, 445, 705, 714
DpnII GATC 4 cut(s) 289, 443, 703, 712
DraI TTTAAA 2 cut(s) 79, 606
Eam1104I CTCTTC 3 cut(s) 66, 342, 800
EarI CTCTTC 3 cut(s) 66, 342, 800
EciI GGCGGA 1 cut(s) 1013
Eco31I GGTCTC 1 cut(s) 821
Eco57I CTGAAG 3 cut(s) 60, 342, 660
Eco88I CYCGRG 2 cut(s) 108, 821
EcoNI CCTNNNNNAGG 1 cut(s) 144
EcoRI GAATTC 1 cut(s) 752
FaeI CATG 1 cut(s) 920
FalI AAGNNNNNCTT 4 cut(s) 105, 137, 711, 743
FaqI GGGAC 1 cut(s) 775
FatI CATG 1 cut(s) 916
FauI CCCGC 1 cut(s) 364
FblI GTMKAC 1 cut(s) 897
Fnu4HI GCNGC 1 cut(s) 870
FokI GGATG 5 cut(s) 182, 203, 365, 434, 492
Fsp4HI GCNGC 1 cut(s) 870
FspBI CTAG 2 cut(s) 299, 312
GluI GCNGC 1 cut(s) 870
GsuI CTGGAG 2 cut(s) 747, 1006
HapII CCGG 2 cut(s) 109, 948
Hin1II CATG 1 cut(s) 920
HincII GTYRAC 1 cut(s) 552
HindII GTYRAC 1 cut(s) 552
HindIII AAGCTT 1 cut(s) 114
HinfI GANTC 4 cut(s) 805, 899, 922, 988
HpaII CCGG 2 cut(s) 109, 948
HphI GGTGA 1 cut(s) 746
Hpy166II GTNNAC 4 cut(s) 296, 377, 552, 898
Hpy188I TCNGA 5 cut(s) 190, 448, 744, 904, 993
Hpy188III TCNNGA 5 cut(s) 651, 802, 833, 851, 926
Hpy8I GTNNAC 4 cut(s) 296, 377, 552, 898
Hpy99I CGWCG 1 cut(s) 591
HpyAV CCTTC 4 cut(s) 449, 665, 839, 923
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4IV ACGT 2 cut(s) 532, 684
HpyCH4V TGCA 6 cut(s) 266, 296, 356, 718, 769, 872
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 317, 775
HpyF3I CTNAG 1 cut(s) 59
HpySE526I ACGT 2 cut(s) 532, 684
Hsp92II CATG 1 cut(s) 920
KpnI GGTACC 1 cut(s) 50
Kzo9I GATC 4 cut(s) 289, 443, 703, 712
LmnI GCTCC 2 cut(s) 577, 664
LpnPI CCDG 8 cut(s) 122, 186, 636, 777, 822, 939, 961, 970
Lsp1109I GCAGC 1 cut(s) 856
LweI GCATC 2 cut(s) 343, 856
MaeI CTAG 2 cut(s) 299, 312
MaeII ACGT 2 cut(s) 532, 684
MalI GATC 4 cut(s) 291, 445, 705, 714
MboI GATC 4 cut(s) 289, 443, 703, 712
MboII GAAGA 8 cut(s) 83, 335, 344, 347, 359, 757, 787, 790
MflI RGATCY 1 cut(s) 703
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 5 cut(s) 88, 623, 752, 882, 956
MlyI GAGTC 2 cut(s) 893, 997
MmeI TCCRAC 1 cut(s) 927
MseI TTAA 4 cut(s) 78, 180, 605, 681
MslI CAYNNNNRTG 5 cut(s) 41, 124, 189, 261, 915
MspI CCGG 2 cut(s) 109, 948
MspR9I CCNGG 2 cut(s) 109, 110
MvnI CGCG 1 cut(s) 891
MwoI GCNNNNNNNGC 3 cut(s) 32, 317, 775
NciI CCSGG 2 cut(s) 109, 110
NdeII GATC 4 cut(s) 289, 443, 703, 712
NlaIII CATG 1 cut(s) 920
NlaIV GGNNCC 2 cut(s) 48, 660
OliI CACNNNNGTG 2 cut(s) 41, 124
PaeR7I CTCGAG 1 cut(s) 821
PfeI GAWTC 2 cut(s) 805, 922
PkrI GCNGC 1 cut(s) 871
PleI GAGTC 2 cut(s) 893, 996
PpsI GAGTC 2 cut(s) 893, 996
Psp1406I AACGTT 1 cut(s) 684
PspN4I GGNNCC 2 cut(s) 48, 660
PspXI VCTCGAGB 1 cut(s) 821
PsuI RGATCY 1 cut(s) 703
RsaI GTAC 4 cut(s) 48, 378, 523, 983
RsaNI GTAC 4 cut(s) 47, 377, 522, 982
RseI CAYNNNNRTG 5 cut(s) 41, 124, 189, 261, 915
SaqAI TTAA 4 cut(s) 78, 180, 605, 681
SatI GCNGC 1 cut(s) 870
Sau3AI GATC 4 cut(s) 289, 443, 703, 712
ScaI AGTACT 1 cut(s) 983
SchI GAGTC 2 cut(s) 893, 997
ScrFI CCNGG 2 cut(s) 109, 110
SduI GDGCHC 1 cut(s) 298
SfaNI GCATC 2 cut(s) 343, 856
SfcI CTRYAG 2 cut(s) 198, 936
Sfr274I CTCGAG 1 cut(s) 821
SlaI CTCGAG 1 cut(s) 821
SmaI CCCGGG 1 cut(s) 110
SmiMI CAYNNNNRTG 5 cut(s) 41, 124, 189, 261, 915
SmlI CTYRAG 1 cut(s) 821
SmoI CTYRAG 1 cut(s) 821
Sse9I AATT 5 cut(s) 88, 623, 752, 882, 956
SsiI CCGC 3 cut(s) 371, 998, 1006
SspMI CTAG 2 cut(s) 299, 312
StyD4I CCNGG 2 cut(s) 107, 108
TaaI ACNGT 1 cut(s) 249
TaiI ACGT 2 cut(s) 535, 687
TaqI TCGA 6 cut(s) 98, 396, 589, 822, 864, 977
TasI AATT 5 cut(s) 88, 623, 752, 882, 956
TatI WGTACW 1 cut(s) 981
TfiI GAWTC 2 cut(s) 805, 922
Tru1I TTAA 4 cut(s) 78, 180, 605, 681
Tru9I TTAA 4 cut(s) 78, 180, 605, 681
TscAI CASTG 3 cut(s) 43, 63, 771
TseI GCWGC 1 cut(s) 869
TspDTI ATGAA 4 cut(s) 345, 468, 480, 492
TspGWI ACGGA 1 cut(s) 434
TspMI CCCGGG 1 cut(s) 108
TspRI CASTG 3 cut(s) 43, 63, 771
VneI GTGCAC 1 cut(s) 294
XagI CCTNNNNNAGG 1 cut(s) 144
XapI RAATTY 2 cut(s) 623, 752
XcmI CCANNNNNNNNNTGG 1 cut(s) 652
XhoI CTCGAG 1 cut(s) 821
XmaI CCCGGG 1 cut(s) 108
XmiI GTMKAC 1 cut(s) 897
XspI CTAG 2 cut(s) 299, 312
ZrmI AGTACT 1 cut(s) 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.