FvH4_7g17130
HSP70 Family

Heat shock cognate 70 kDa

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
N/A
Physical Location & Seq
Reverse (-)
14632230 .. 14632758
529 bp
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UTR
Exon/CDS
Intron
FvH4_7g17130.t1

Sequence Viewer

Length: 432 bp
ATGATTCCTCCTGAGTCCTTCCTTGGTTCAACTGTGAAGAATGCAGTTATCACTGTCCCAGCTCACTTCAATCACTCACAACGTCAAGCAACAAAGAATGCTGGTGCTATTTCTGGCCTTAATGTCATTCGTATTCTCAGTGAACCAACTGCTGCAGCCATTGCTTATGACTTTGACAAGAAGGCAGGATGGTATAGCAAAAGAAACGTGATGGTTTTTGACTTGGATGGTGGGACTTTAGATGTTTTTGTGGAAACTCCAAAGCTCTTAGGATCGAGGTTAAGAAATGCATGTGAGAAGGCAAAGAGGAGACTTTCATGTGACTTTGAAACTGAGATTGAAGTAGACTATTTGGATCAGCGTATTGATTTCTCTACAAACATTACTCGTGCCAAGTTCGGACAACTGAACATGGATTTACTCAAGAGGTGA

Protein Analysis

144

Amino Acids

16.01

Weight (kDa)

8.95

Isoelectric Point (pI)

50.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 5 - 83 1.4e-30 Hsp70 protein
HSP70 PF00012 91 - 143 8.1e-08 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 345
AclWI GGATC 2 cut(s) 280, 363
AgsI TTSAA 4 cut(s) 30, 70, 329, 341
AluBI AGCT 2 cut(s) 62, 265
AluI AGCT 2 cut(s) 62, 265
Alw26I GTCTC 1 cut(s) 304
AlwI GGATC 2 cut(s) 280, 363
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 2 cut(s) 152, 155
BauI CACGAG 1 cut(s) 387
BbvI GCAGC 2 cut(s) 139, 167
BccI CCATC 3 cut(s) 183, 205, 221
BcoDI GTCTC 1 cut(s) 304
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 2 cut(s) 153, 156
BlsI GCNGC 2 cut(s) 154, 157
BpuEI CTTGAG 1 cut(s) 407
BsaJI CCNNGG 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 2 cut(s) 194, 232
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 2 cut(s) 151, 324
BseRI GAGGAG 1 cut(s) 322
BseXI GCAGC 2 cut(s) 139, 167
BseYI CCCAGC 1 cut(s) 58
BshFI GGCC 1 cut(s) 117
BslFI GGGAC 2 cut(s) 41, 247
BsmAI GTCTC 1 cut(s) 304
BsmFI GGGAC 2 cut(s) 41, 247
BsmI GAATGC 2 cut(s) 46, 103
BsnI GGCC 1 cut(s) 117
Bsp143I GATC 2 cut(s) 272, 355
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 3 cut(s) 4, 150, 325
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 2 cut(s) 280, 363
BsrDI GCAATG 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 2 cut(s) 272, 355
BssSI CACGAG 1 cut(s) 387
BssT1I CCWWGG 1 cut(s) 22
Bst2BI CACGAG 1 cut(s) 387
Bst4CI ACNGT 2 cut(s) 34, 55
BstAPI GCANNNNNTGC 1 cut(s) 161
BstDEI CTNAG 4 cut(s) 12, 137, 268, 333
BstF5I GGATG 2 cut(s) 194, 232
BstKTI GATC 2 cut(s) 275, 358
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 2 cut(s) 272, 355
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 294
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 2 cut(s) 139, 167
BsuRI GGCC 1 cut(s) 117
BtsCI GGATG 2 cut(s) 194, 232
BtsIMutI CAGTG 2 cut(s) 51, 145
CviAII CATG 3 cut(s) 291, 318, 412
CviJI RGCY 4 cut(s) 62, 117, 158, 265
CviKI_1 RGCY 4 cut(s) 62, 117, 158, 265
DdeI CTNAG 4 cut(s) 12, 137, 268, 333
DpnI GATC 2 cut(s) 274, 357
DpnII GATC 2 cut(s) 272, 355
Eco130I CCWWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 22
EcoT22I ATGCAT 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 3 cut(s) 294, 321, 415
FaiI YATR 5 cut(s) 168, 195, 292, 319, 413
FaqI GGGAC 2 cut(s) 41, 247
FatI CATG 3 cut(s) 290, 317, 411
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 2 cut(s) 153, 156
FokI GGATG 2 cut(s) 201, 239
Fsp4HI GCNGC 2 cut(s) 153, 156
GluI GCNGC 2 cut(s) 153, 156
GsaI CCCAGC 1 cut(s) 62
HaeIII GGCC 1 cut(s) 117
Hin1II CATG 3 cut(s) 294, 321, 415
HinfI GANTC 2 cut(s) 4, 14
Hpy166II GTNNAC 2 cut(s) 143, 346
Hpy188I TCNGA 1 cut(s) 401
Hpy188III TCNNGA 2 cut(s) 11, 424
Hpy8I GTNNAC 2 cut(s) 143, 346
HpyAV CCTTC 3 cut(s) 28, 175, 292
HpyCH4III ACNGT 2 cut(s) 34, 55
HpyCH4IV ACGT 2 cut(s) 82, 207
HpyCH4V TGCA 3 cut(s) 44, 155, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 4 cut(s) 12, 137, 268, 333
HpySE526I ACGT 2 cut(s) 82, 207
Hsp92II CATG 3 cut(s) 294, 321, 415
Kzo9I GATC 2 cut(s) 272, 355
LpnPI CCDG 5 cut(s) 24, 72, 87, 99, 171
Lsp1109I GCAGC 2 cut(s) 139, 167
MaeII ACGT 2 cut(s) 82, 207
MaeIII GTNAC 1 cut(s) 320
MalI GATC 2 cut(s) 274, 357
MboI GATC 2 cut(s) 272, 355
MboII GAAGA 1 cut(s) 49
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 4 cut(s) 18, 270, 300, 420
Mph1103I ATGCAT 1 cut(s) 292
MseI TTAA 2 cut(s) 120, 281
Mva1269I GAATGC 2 cut(s) 46, 103
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 2 cut(s) 272, 355
NlaIII CATG 3 cut(s) 294, 321, 415
NmuCI GTSAC 1 cut(s) 320
NsiI ATGCAT 1 cut(s) 292
NspI RCATGY 1 cut(s) 294
PctI GAATGC 2 cut(s) 46, 103
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 2 cut(s) 154, 157
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PspFI CCCAGC 1 cut(s) 58
PstI CTGCAG 1 cut(s) 157
SaqAI TTAA 2 cut(s) 120, 281
SatI GCNGC 2 cut(s) 153, 156
Sau3AI GATC 2 cut(s) 272, 355
SchI GAGTC 1 cut(s) 23
SetI ASST 6 cut(s) 64, 85, 210, 267, 281, 431
SfcI CTRYAG 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 2 cut(s) 34, 55
TaiI ACGT 2 cut(s) 85, 210
TaqI TCGA 1 cut(s) 275
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 120, 281
Tru9I TTAA 2 cut(s) 120, 281
TscAI CASTG 2 cut(s) 58, 145
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 2 cut(s) 152, 155
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 1 cut(s) 306
TspRI CASTG 2 cut(s) 58, 145
XceI RCATGY 1 cut(s) 294
XmiI GTMKAC 1 cut(s) 345
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.