MD01G1090200.v1.1
MYB Family

Protein LHY-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
N/A
Physical Location & Seq
Reverse (-)
20448171 .. 20449309
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1090200.v1.1.491

Sequence Viewer

Length: 210 bp
ATGATGACATGGATGTTGCATCAACTGAAGAAGTTCAGGATTCAAACAATGCAAAAACAAGAAAACAGTGTTGTAGGGACAGATGCCTCAAAGAAGCGTAAGAAAGGGAAGGAAGAGCTGAAAGAAACTGACATAAATCACCCATCTACCACGTCTAGTGATAATTGCAGTAGAACTGTCAATGTTAAATTTTGGATGTATATTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042752 GO:0042754 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043393 GO:0043433 GO:0043496 GO:0043565 GO:0044092 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051098 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

70

Amino Acids

8.14

Weight (kDa)

9.78

Isoelectric Point (pI)

31.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 47
AgsI TTSAA 1 cut(s) 44
AjiI CACGTC 1 cut(s) 153
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
ApoI RAATTY 1 cut(s) 188
Asp700I GAANNNNTTC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 131
BccI CCATC 1 cut(s) 151
BfaI CTAG 1 cut(s) 156
BmgBI CACGTC 1 cut(s) 153
BmsI GCATC 2 cut(s) 28, 73
BseGI GGATG 2 cut(s) 18, 201
BslFI GGGAC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 91
BspQI GCTCTTC 1 cut(s) 108
Bst4CI ACNGT 2 cut(s) 68, 178
Bst6I CTCTTC 1 cut(s) 108
BstF5I GGATG 2 cut(s) 18, 201
BtrI CACGTC 1 cut(s) 153
BtsCI GGATG 2 cut(s) 18, 201
BtsIMutI CAGTG 1 cut(s) 73
CviAII CATG 1 cut(s) 9
CviJI RGCY 1 cut(s) 118
CviKI_1 RGCY 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 47
FaeI CATG 1 cut(s) 12
FaiI YATR 3 cut(s) 10, 134, 201
FaqI GGGAC 1 cut(s) 91
FatI CATG 1 cut(s) 8
FokI GGATG 1 cut(s) 25
FspBI CTAG 1 cut(s) 156
Hin1II CATG 1 cut(s) 12
HinfI GANTC 1 cut(s) 40
HphI GGTGA 1 cut(s) 131
Hpy188III TCNNGA 2 cut(s) 37, 207
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 68, 178
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 3 cut(s) 19, 52, 168
HpySE526I ACGT 1 cut(s) 152
Hsp92II CATG 1 cut(s) 12
LguI GCTCTTC 1 cut(s) 108
LpnPI CCDG 1 cut(s) 22
LweI GCATC 2 cut(s) 28, 73
MaeI CTAG 1 cut(s) 156
MaeII ACGT 1 cut(s) 152
MboII GAAGA 2 cut(s) 40, 125
MluCI AATT 2 cut(s) 163, 188
MnlI CCTC 1 cut(s) 97
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 1 cut(s) 186
NlaIII CATG 1 cut(s) 12
PciSI GCTCTTC 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 1 cut(s) 40
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 186
SetI ASST 2 cut(s) 120, 155
SfaNI GCATC 2 cut(s) 28, 73
SgeI CNNG 5 cut(s) 21, 49, 71, 163, 168
Sse9I AATT 2 cut(s) 163, 188
SspMI CTAG 1 cut(s) 156
TaaI ACNGT 2 cut(s) 68, 178
TaiI ACGT 1 cut(s) 155
TasI AATT 2 cut(s) 163, 188
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 1 cut(s) 73
TspRI CASTG 1 cut(s) 73
XapI RAATTY 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.