Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23875272 .. 23875720

Gene Structure 449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1127100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTTGAGTGAGAATAATGAAAATGGGAAGCTTCAAGACTTTGCACTCTTGGATGTCATCCCTCTATTACTTGGGGTGGAGACAACTCAGACAAGGTGGGAAAGTGGTTCTGACGATAAACATTTCATGCTAGTTGTGATCCCAAGAAACACCAGAGTTCCGTTCATCAACCTTAATAACTTTTTGGGTGGATTTCACATCCATGACATTCCTCCTGCTCCTGCCAGAGCTGCTAAATTCAAACTTTGCTTTGATATTGATGAAAATGGTATCCTGAGTGTCTCTGCGGAGGACATGTCCACCGGCCAAAAGAAGGTGATTACTGTCAACTGTGACAGAAGAACTTGTGAGGGAATTGAGGCATTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 Retrotran_gag_2

Protein Analysis

124

Amino Acids

13.7

Weight (kDa)

5.07

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	55 - 113	3.1e-11	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	287
AclWI	GGATC	1 cut(s)	133
AcoI	YGGCCR	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	313
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	35, 241
AluBI	AGCT	2 cut(s)	31, 230
AluI	AGCT	2 cut(s)	31, 230
Alw26I	GTCTC	2 cut(s)	74, 286
AlwI	GGATC	1 cut(s)	133
AoxI	GGCC	1 cut(s)	304
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	328
BbvI	GCAGC	1 cut(s)	217
BciVI	GTATCC	1 cut(s)	281
BcoDI	GTCTC	2 cut(s)	74, 286
BfaI	CTAG	1 cut(s)	131
BfuI	GTATCC	1 cut(s)	281
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse118I	RCCGGY	1 cut(s)	302
BseGI	GGATG	3 cut(s)	57, 58, 198
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMII	CTCAG	2 cut(s)	101, 266
BseXI	GCAGC	1 cut(s)	217
BshFI	GGCC	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	2 cut(s)	74, 286
BsnI	GGCC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	138
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	1 cut(s)	306
BspCNI	CTCAG	2 cut(s)	100, 267
BspPI	GGATC	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	302
BssMI	GATC	1 cut(s)	138
Bst4CI	ACNGT	2 cut(s)	325, 332
BstDEI	CTNAG	2 cut(s)	87, 275
BstF5I	GGATG	3 cut(s)	57, 58, 198
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	2 cut(s)	74, 286
BstMBI	GATC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNSI	RCATGY	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	217
BsuI	GTATCC	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	306
BtsCI	GGATG	3 cut(s)	57, 58, 198
Cfr10I	RCCGGY	1 cut(s)	302
CviAII	CATG	3 cut(s)	127, 203, 295
CviJI	RGCY	3 cut(s)	31, 230, 306
CviKI_1	RGCY	3 cut(s)	31, 230, 306
DdeI	CTNAG	2 cut(s)	87, 275
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	304
FaeI	CATG	3 cut(s)	130, 206, 298
FaiI	YATR	4 cut(s)	128, 204, 296, 370
FatI	CATG	3 cut(s)	126, 202, 294
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	3 cut(s)	44, 65, 185
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	306
HapII	CCGG	1 cut(s)	303
Hin1II	CATG	3 cut(s)	130, 206, 298
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	29
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	2 cut(s)	300, 328
Hpy188I	TCNGA	2 cut(s)	90, 112
Hpy188III	TCNNGA	2 cut(s)	35, 274
Hpy8I	GTNNAC	2 cut(s)	300, 328
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	2 cut(s)	325, 332
HpyCH4V	TGCA	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	2 cut(s)	87, 275
Hsp92II	CATG	3 cut(s)	130, 206, 298
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	6 cut(s)	166, 228, 234, 238, 287, 316
Lsp1109I	GCAGC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	131
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	1 cut(s)	351
MluCI	AATT	2 cut(s)	236, 354
MnlI	CCTC	5 cut(s)	72, 222, 283, 343, 352
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	201
MspI	CCGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	1 cut(s)	230
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	3 cut(s)	130, 206, 298
NmuCI	GTSAC	1 cut(s)	332
NspI	RCATGY	1 cut(s)	298
PciI	ACATGT	1 cut(s)	294
PkrI	GCNGC	1 cut(s)	232
PscI	ACATGT	1 cut(s)	294
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	1 cut(s)	138
SetI	ASST	5 cut(s)	33, 98, 174, 232, 318
SmiMI	CAYNNNNRTG	1 cut(s)	201
Sse9I	AATT	2 cut(s)	236, 354
SsiI	CCGC	1 cut(s)	287
SspMI	CTAG	1 cut(s)	131
TaaI	ACNGT	2 cut(s)	325, 332
TasI	AATT	2 cut(s)	236, 354
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	4 cut(s)	33, 115, 154, 276
TspGWI	ACGGA	1 cut(s)	150
XapI	RAATTY	1 cut(s)	236
XceI	RCATGY	1 cut(s)	298
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.