MD01G1206100.v1.1
NAC Family

aortic smooth muscle cell differentiation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
N/A
Physical Location & Seq
Forward (+)
30161921 .. 30163548
1628 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1206100.v1.1.491

Sequence Viewer

Length: 603 bp
ATGCCTGTCCAACATGACTCTCGCAGGGACTATCAACAATCTGGAAAGCGGTTACTTTACCGTGAAGGCGGCCAAAATGACGGTGTTATACCAAATCCTCTGAGTTTGAATAGCGCATTAGGAAACGTGACTGGTGCTGCAACTGTTGCTGTTGAATATTCTGCAGAACGCAGCGTTCTAAACACAAACAGGCCTGCTTCCTCCGGGGCAAGGATGTCTTACACTATACAAACGAAGTGCCAGGAGGCACTTAACATGATCAAGAGACTGATAGACGAAAAAGGCCACGAAATCATGCCTTTTTCGCTGAGCGCATGGAGGCAGATCGTGAGCTCCGCTCACAGGATGAATGTATCCGGAACTGATATCCTGAATTTTCAAAAAATTTATCAACGGCTGGATCAAAGAGACTACTATGGAGTTCTAGATTTTGCGGCGGATGTCCAGTTAACGTTTAAATGCTTAGCAGATCAGTATCCGCTCTATTCCCCGATACGGGATGAAGTGCAGAAAGTCGAAGTGTTGTTTTTCGACATCATGAAGAGAATGTTCCCGGATACAGATTTCCAGCAGCTGCAAAACCAAGTTCAAAATCTTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Ank_2 BAH Bromodomain SNF2_N SnAC

Protein Analysis

201

Amino Acids

22.82

Weight (kDa)

6.83

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 338, 481
AccIII TCCGGA 1 cut(s) 356
AciI CCGC 6 cut(s) 49, 69, 336, 434, 437, 479
AclI AACGTT 1 cut(s) 452
AclWI GGATC 1 cut(s) 408
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 2 cut(s) 373, 384
AfiI CCNNNNNNNGG 4 cut(s) 210, 342, 495, 496
AgsI TTSAA 4 cut(s) 109, 155, 380, 590
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 2 cut(s) 333, 574
AluI AGCT 2 cut(s) 333, 574
Alw21I GWGCWC 1 cut(s) 335
Alw26I GTCTC 2 cut(s) 259, 402
AlwI GGATC 1 cut(s) 408
AlwNI CAGNNNCTG 1 cut(s) 574
Aor13HI TCCGGA 1 cut(s) 356
AoxI GGCC 3 cut(s) 70, 191, 283
ApeKI GCWGC 4 cut(s) 137, 171, 571, 574
ApoI RAATTY 2 cut(s) 373, 384
AspLEI GCGC 2 cut(s) 116, 314
AsuC2I CCSGG 2 cut(s) 205, 554
BanII GRGCYC 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 335
BbvI GCAGC 4 cut(s) 124, 183, 561, 583
BceAI ACGGC 1 cut(s) 410
BciT130I CCWGG 1 cut(s) 242
BciVI GTATCC 3 cut(s) 364, 486, 550
BclI TGATCA 1 cut(s) 258
BcnI CCSGG 2 cut(s) 205, 554
BcoDI GTCTC 2 cut(s) 259, 402
BfaI CTAG 2 cut(s) 425, 601
BfmI CTRYAG 1 cut(s) 162
BfuI GTATCC 3 cut(s) 364, 486, 550
BisI GCNGC 6 cut(s) 70, 138, 172, 435, 572, 575
BlpI GCTNAGC 2 cut(s) 308, 463
BlsI GCNGC 6 cut(s) 71, 139, 173, 436, 573, 576
Bme1390I CCNGG 3 cut(s) 205, 242, 554
BmrFI CCNGG 3 cut(s) 205, 242, 554
BplI GAGNNNNNCTC 2 cut(s) 322, 354
Bpu1102I GCTNAGC 2 cut(s) 308, 463
BpuMI CCSGG 2 cut(s) 205, 554
BsaBI GATNNNNATC 1 cut(s) 474
BsaJI CCNNGG 1 cut(s) 204
BsaWI WCCGGW 1 cut(s) 356
Bsc4I CCNNNNNNNGG 4 cut(s) 210, 342, 495, 496
Bse1I ACTGG 2 cut(s) 136, 445
Bse8I GATNNNNATC 1 cut(s) 474
BseAI TCCGGA 1 cut(s) 356
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 4 cut(s) 219, 351, 445, 505
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 4 cut(s) 210, 342, 495, 496
BseMII CTCAG 2 cut(s) 92, 299
BseNI ACTGG 2 cut(s) 136, 445
BseXI GCAGC 4 cut(s) 124, 183, 561, 583
BsgI GTGCAG 1 cut(s) 527
BshFI GGCC 3 cut(s) 72, 193, 285
BsiHKAI GWGCWC 1 cut(s) 335
BsiSI CCGG 3 cut(s) 204, 357, 554
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 4 cut(s) 210, 342, 495, 496
BsmAI GTCTC 2 cut(s) 259, 402
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 3 cut(s) 72, 193, 285
Bsp1286I GDGCHC 1 cut(s) 335
Bsp13I TCCGGA 1 cut(s) 356
Bsp143I GATC 4 cut(s) 258, 324, 400, 469
Bsp1720I GCTNAGC 2 cut(s) 308, 463
BspACI CCGC 6 cut(s) 49, 69, 336, 434, 437, 479
BspANI GGCC 3 cut(s) 72, 193, 285
BspCNI CTCAG 2 cut(s) 93, 300
BspEI TCCGGA 1 cut(s) 356
BspHI TCATGA 1 cut(s) 537
BspMAI CTGCAG 1 cut(s) 166
BspPI GGATC 1 cut(s) 408
BsrBI CCGCTC 2 cut(s) 338, 481
BsrI ACTGG 2 cut(s) 136, 445
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 4 cut(s) 258, 324, 400, 469
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 3 cut(s) 62, 83, 145
Bst6I CTCTTC 1 cut(s) 536
BstAPI GCANNNNNTGC 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 3 cut(s) 101, 308, 463
BstF5I GGATG 4 cut(s) 219, 351, 445, 505
BstHHI GCGC 2 cut(s) 116, 314
BstKTI GATC 4 cut(s) 261, 327, 403, 472
BstMAI GTCTC 2 cut(s) 259, 402
BstMBI GATC 4 cut(s) 258, 324, 400, 469
BstMWI GCNNNNNNNGC 2 cut(s) 146, 304
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 3 cut(s) 203, 240, 552
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 4 cut(s) 124, 183, 561, 583
BsuI GTATCC 3 cut(s) 364, 486, 550
BsuRI GGCC 3 cut(s) 72, 193, 285
BtsCI GGATG 4 cut(s) 219, 351, 445, 505
Cac8I GCNNGC 1 cut(s) 195
CaiI CAGNNNCTG 1 cut(s) 574
CciI TCATGA 1 cut(s) 537
CfoI GCGC 2 cut(s) 116, 314
CviAII CATG 5 cut(s) 14, 256, 295, 315, 538
CviJI RGCY 6 cut(s) 72, 193, 285, 333, 397, 574
CviKI_1 RGCY 6 cut(s) 72, 193, 285, 333, 397, 574
DdeI CTNAG 3 cut(s) 101, 308, 463
DpnI GATC 4 cut(s) 260, 326, 402, 471
DpnII GATC 4 cut(s) 258, 324, 400, 469
DraI TTTAAA 1 cut(s) 457
EaeI YGGCCR 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
EciI GGCGGA 1 cut(s) 452
Ecl136II GAGCTC 1 cut(s) 333
Eco147I AGGCCT 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 335
Eco32I GATATC 1 cut(s) 367
Eco53kI GAGCTC 1 cut(s) 333
EcoICRI GAGCTC 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 240
EcoRV GATATC 1 cut(s) 367
EcoT38I GRGCYC 1 cut(s) 335
FaeI CATG 5 cut(s) 17, 259, 298, 318, 541
FaiI YATR 8 cut(s) 15, 89, 227, 257, 296, 316, 417, 539
FalI AAGNNNNNCTT 2 cut(s) 202, 234
FaqI GGGAC 1 cut(s) 41
FatI CATG 5 cut(s) 13, 255, 294, 314, 537
FbaI TGATCA 1 cut(s) 258
Fnu4HI GCNGC 6 cut(s) 70, 138, 172, 435, 572, 575
FokI GGATG 4 cut(s) 226, 358, 452, 512
FriOI GRGCYC 1 cut(s) 335
Fsp4HI GCNGC 6 cut(s) 70, 138, 172, 435, 572, 575
FspBI CTAG 2 cut(s) 425, 601
GlaI GCGC 2 cut(s) 115, 313
GluI GCNGC 6 cut(s) 70, 138, 172, 435, 572, 575
HaeIII GGCC 3 cut(s) 72, 193, 285
HapII CCGG 3 cut(s) 204, 357, 554
HhaI GCGC 2 cut(s) 116, 314
Hin1II CATG 5 cut(s) 17, 259, 298, 318, 541
Hin6I GCGC 2 cut(s) 114, 312
HinP1I GCGC 2 cut(s) 114, 312
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HinfI GANTC 1 cut(s) 17
HpaI GTTAAC 1 cut(s) 450
HpaII CCGG 3 cut(s) 204, 357, 554
Hpy166II GTNNAC 1 cut(s) 450
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 7 cut(s) 42, 262, 328, 357, 370, 425, 538
Hpy8I GTNNAC 1 cut(s) 450
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 3 cut(s) 62, 83, 145
HpyCH4IV ACGT 2 cut(s) 126, 452
HpyCH4V TGCA 4 cut(s) 140, 164, 508, 577
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 304
HpyF3I CTNAG 3 cut(s) 101, 308, 463
HpySE526I ACGT 2 cut(s) 126, 452
Hsp92II CATG 5 cut(s) 17, 259, 298, 318, 541
HspAI GCGC 2 cut(s) 114, 312
Kpn2I TCCGGA 1 cut(s) 356
Ksp22I TGATCA 1 cut(s) 258
KspAI GTTAAC 1 cut(s) 450
Kzo9I GATC 4 cut(s) 258, 324, 400, 469
LmnI GCTCC 1 cut(s) 338
Lsp1109I GCAGC 4 cut(s) 124, 183, 561, 583
MaeI CTAG 2 cut(s) 425, 601
MaeII ACGT 2 cut(s) 126, 452
MaeIII GTNAC 2 cut(s) 51, 127
MalI GATC 4 cut(s) 260, 326, 402, 471
MbiI CCGCTC 2 cut(s) 338, 481
MboI GATC 4 cut(s) 258, 324, 400, 469
MboII GAAGA 1 cut(s) 553
MhlI GDGCHC 1 cut(s) 335
MluCI AATT 2 cut(s) 373, 384
MlyI GAGTC 1 cut(s) 11
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 4 cut(s) 108, 211, 238, 312
MroI TCCGGA 1 cut(s) 356
MseI TTAA 3 cut(s) 252, 449, 456
MspA1I CMGCKG 1 cut(s) 574
MspI CCGG 3 cut(s) 204, 357, 554
MspR9I CCNGG 3 cut(s) 205, 242, 554
MvaI CCWGG 1 cut(s) 242
MwoI GCNNNNNNNGC 2 cut(s) 146, 304
NciI CCSGG 2 cut(s) 205, 554
NdeII GATC 4 cut(s) 258, 324, 400, 469
NlaIII CATG 5 cut(s) 17, 259, 298, 318, 541
NmuCI GTSAC 1 cut(s) 127
PagI TCATGA 1 cut(s) 537
PceI AGGCCT 1 cut(s) 193
PfoI TCCNGGA 1 cut(s) 552
PkrI GCNGC 6 cut(s) 71, 139, 173, 436, 573, 576
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
Psp124BI GAGCTC 1 cut(s) 335
Psp1406I AACGTT 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PstI CTGCAG 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 574
PvuII CAGCTG 1 cut(s) 574
SacI GAGCTC 1 cut(s) 335
SaqAI TTAA 3 cut(s) 252, 449, 456
SatI GCNGC 6 cut(s) 70, 138, 172, 435, 572, 575
Sau3AI GATC 4 cut(s) 258, 324, 400, 469
SchI GAGTC 1 cut(s) 11
ScrFI CCNGG 3 cut(s) 205, 242, 554
SduI GDGCHC 1 cut(s) 335
SetI ASST 4 cut(s) 129, 335, 455, 576
SfcI CTRYAG 1 cut(s) 162
Sse9I AATT 2 cut(s) 373, 384
SseBI AGGCCT 1 cut(s) 193
SsiI CCGC 6 cut(s) 49, 69, 336, 434, 437, 479
SspI AATATT 1 cut(s) 158
SspMI CTAG 2 cut(s) 425, 601
SstI GAGCTC 1 cut(s) 335
StuI AGGCCT 1 cut(s) 193
StyD4I CCNGG 3 cut(s) 203, 240, 552
TaaI ACNGT 3 cut(s) 62, 83, 145
TaiI ACGT 2 cut(s) 129, 455
TaqI TCGA 2 cut(s) 516, 531
TasI AATT 2 cut(s) 373, 384
TauI GCSGC 2 cut(s) 72, 437
Tru1I TTAA 3 cut(s) 252, 449, 456
Tru9I TTAA 3 cut(s) 252, 449, 456
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 4 cut(s) 137, 171, 571, 574
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 3 cut(s) 362, 516, 554
XapI RAATTY 2 cut(s) 373, 384
XbaI TCTAGA 1 cut(s) 424
XspI CTAG 2 cut(s) 425, 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.