MD03G1161200.v1.1
MYB Family

nuclease HARBI1

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
N/A
Physical Location & Seq
Forward (+)
19420393 .. 19421109
717 bp
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UTR
Exon/CDS
Intron
MD03G1161200.v1.1.491

Sequence Viewer

Length: 306 bp
ATGCAGTGTGTGTGTGTGTGTAGTGTATGTAGTGTGTGTGTAGTGTATGCAGTGTATGTAGTGTGTATGTATGTACTGTGTTTGCAGTGTGTATGTATGTACTGTGTATACAATGTGAATGTTTTGTATTGTGTGGGGTTGATGCTGAATTGCAATTTGTTGTGGTTGTTGGTTGCAGAGAAGAGGAGCATAAACGGAAGGCTAAGGCTAAGGCTACTGCATTACAGAGATGTCTTATTTGGAGACAATTTGTATTTGTACGATTCTTGTGGTGATGATGCTACGTGGCAAACAGAGACATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

11.63

Weight (kDa)

5.55

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 108
AfaI GTAC 3 cut(s) 75, 101, 260
AflIII ACRYGT 1 cut(s) 299
Alw26I GTCTC 2 cut(s) 237, 290
AsuHPI GGTGA 1 cut(s) 284
BcoDI GTCTC 2 cut(s) 237, 290
BmsI GCATC 2 cut(s) 132, 268
Bpu10I CCTNAGC 2 cut(s) 203, 209
BsaAI YACGTR 1 cut(s) 285
BseRI GAGGAG 1 cut(s) 199
BsmAI GTCTC 2 cut(s) 237, 290
BssNAI GTATAC 1 cut(s) 109
Bst1107I GTATAC 1 cut(s) 109
Bst4CI ACNGT 2 cut(s) 78, 104
Bst6I CTCTTC 1 cut(s) 176
BstBAI YACGTR 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 203, 209
BstMAI GTCTC 2 cut(s) 237, 290
BstNSI RCATGY 1 cut(s) 303
BstZ17I GTATAC 1 cut(s) 109
BtsI GCAGTG 3 cut(s) 11, 57, 92
BtsIMutI CAGTG 3 cut(s) 11, 57, 92
Csp6I GTAC 3 cut(s) 74, 100, 259
CviAII CATG 1 cut(s) 300
CviJI RGCY 3 cut(s) 202, 208, 214
CviKI_1 RGCY 3 cut(s) 202, 208, 214
CviQI GTAC 3 cut(s) 74, 100, 259
DdeI CTNAG 2 cut(s) 203, 209
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
FaeI CATG 1 cut(s) 303
FatI CATG 1 cut(s) 299
FblI GTMKAC 1 cut(s) 108
Hin1II CATG 1 cut(s) 303
HinfI GANTC 1 cut(s) 263
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 1 cut(s) 109
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 2 cut(s) 78, 104
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 6 cut(s) 4, 50, 85, 153, 176, 220
HpyF3I CTNAG 2 cut(s) 203, 209
HpySE526I ACGT 1 cut(s) 284
Hsp92II CATG 1 cut(s) 303
LmnI GCTCC 1 cut(s) 186
LweI GCATC 2 cut(s) 132, 268
MaeII ACGT 1 cut(s) 284
MboII GAAGA 1 cut(s) 193
MluCI AATT 3 cut(s) 148, 154, 247
MnlI CCTC 1 cut(s) 177
NlaIII CATG 1 cut(s) 303
NspI RCATGY 1 cut(s) 303
PciI ACATGT 1 cut(s) 299
PfeI GAWTC 1 cut(s) 263
Ppu21I YACGTR 1 cut(s) 285
PscI ACATGT 1 cut(s) 299
RsaI GTAC 3 cut(s) 75, 101, 260
RsaNI GTAC 3 cut(s) 74, 100, 259
SetI ASST 1 cut(s) 287
SfaNI GCATC 2 cut(s) 132, 268
SgeI CNNG 2 cut(s) 279, 297
Sse9I AATT 3 cut(s) 148, 154, 247
TaaI ACNGT 2 cut(s) 78, 104
TaiI ACGT 1 cut(s) 287
TasI AATT 3 cut(s) 148, 154, 247
TatI WGTACW 2 cut(s) 73, 99
TfiI GAWTC 1 cut(s) 263
TscAI CASTG 2 cut(s) 57, 92
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 2 cut(s) 57, 92
XceI RCATGY 1 cut(s) 303
XmiI GTMKAC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.