Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

5123234 .. 5125580

Gene Structure 2347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1043500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCGAGATATTGCTGAGCTTGAACAGAAAGTCCAGACGTTGCAAACAGAAGCAACATCCTTGTCTGCTCAATTGACTCTCTTGCAGAGAGATACAAATGCATTGAACAATGCACTGAAAGAAGAAATTCAGCATCTGAAAGTTATGACTGGCCAAGCTATGCCAAATGGTGGACCTATGATGAACTACGCTTCTTTTGGCGCGGCGGGTCAGCAGCAGTTCTATCCAAACAATCAAGCAATGCACACTCTTCTAACTGCACAGCAGTTTCAACAGCTCCAGATTCATTCTCAGAAGCAGCAGCACCAGTTTCAGCAGCATCAGCTCCATCAACTCCAGCAGCAACAGATGCAGCAGCATCATCAGCAACAGCAACAGCAGCAGCAACAACAAAGTGGGGAGTTGAAAATAGGAGAATCCGTGCCTCCGCCAAGCCAGAAAGATAATACATCAGAGGTCAACCAATCTGTAACGAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

161

Amino Acids

18.26

Weight (kDa)

6.21

Isoelectric Point (pI)

61.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	170
AccII	CGCG	1 cut(s)	203
AciI	CCGC	3 cut(s)	203, 206, 428
AcoI	YGGCCR	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgsI	TTSAA	4 cut(s)	23, 106, 272, 406
AloI	GAACNNNNNNTCC	2 cut(s)	15, 47
AluBI	AGCT	4 cut(s)	19, 158, 277, 325
AluI	AGCT	4 cut(s)	19, 158, 277, 325
AlwNI	CAGNNNCTG	1 cut(s)	136
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	9 cut(s)	214, 298, 301, 316, 340, 352, 355, 379, 382
ApoI	RAATTY	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	173
BalI	TGGCCA	1 cut(s)	153
BbvI	GCAGC	9 cut(s)	226, 310, 313, 328, 352, 364, 367, 391, 394
BccI	CCATC	1 cut(s)	336
BlpI	GCTNAGC	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmsI	GCATC	4 cut(s)	142, 328, 339, 367
BpmI	CTGGAG	2 cut(s)	263, 320
Bpu1102I	GCTNAGC	1 cut(s)	15
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	154, 307
Bse3DI	GCAATG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	6, 305
BseNI	ACTGG	2 cut(s)	154, 307
BseXI	GCAGC	9 cut(s)	226, 310, 313, 328, 352, 364, 367, 391, 394
BsgI	GTGCAG	1 cut(s)	243
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	170
BsnI	GGCC	1 cut(s)	153
Bsp1720I	GCTNAGC	1 cut(s)	15
BspACI	CCGC	3 cut(s)	203, 206, 428
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	2 cut(s)	7, 304
BspFNI	CGCG	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	154, 307
Bst6I	CTCTTC	1 cut(s)	255
BstAPI	GCANNNNNTGC	1 cut(s)	349
BstDEI	CTNAG	2 cut(s)	15, 291
BstF5I	GGATG	1 cut(s)	56
BstFNI	CGCG	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	203
BstMWI	GCNNNNNNNGC	4 cut(s)	322, 349, 364, 379
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	9 cut(s)	226, 310, 313, 328, 352, 364, 367, 391, 394
BsuRI	GGCC	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	56
BtsIMutI	CAGTG	1 cut(s)	113
CaiI	CAGNNNCTG	1 cut(s)	136
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	173
CviJI	RGCY	6 cut(s)	19, 153, 158, 277, 325, 435
CviKI_1	RGCY	6 cut(s)	19, 153, 158, 277, 325, 435
DdeI	CTNAG	2 cut(s)	15, 291
EaeI	YGGCCR	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	173
EcoT22I	ATGCAT	1 cut(s)	103
FaiI	YATR	3 cut(s)	146, 161, 179
FauI	CCCGC	1 cut(s)	199
FokI	GGATG	1 cut(s)	43
GlaI	GCGC	1 cut(s)	202
GsuI	CTGGAG	2 cut(s)	263, 320
HaeIII	GGCC	1 cut(s)	153
HhaI	GCGC	1 cut(s)	203
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	3 cut(s)	76, 283, 416
Hpy166II	GTNNAC	2 cut(s)	173, 460
Hpy188I	TCNGA	3 cut(s)	138, 294, 454
Hpy188III	TCNNGA	2 cut(s)	34, 280
Hpy8I	GTNNAC	2 cut(s)	173, 460
HpyAV	CCTTC	1 cut(s)	469
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	7 cut(s)	43, 85, 101, 113, 244, 260, 352
HpyF10VI	GCNNNNNNNGC	4 cut(s)	322, 349, 364, 379
HpyF3I	CTNAG	2 cut(s)	15, 291
HpySE526I	ACGT	1 cut(s)	38
HspAI	GCGC	1 cut(s)	201
LmnI	GCTCC	2 cut(s)	282, 330
LpnPI	CCDG	6 cut(s)	47, 135, 293, 320, 350, 449
Lsp1109I	GCAGC	9 cut(s)	226, 310, 313, 328, 352, 364, 367, 391, 394
LweI	GCATC	4 cut(s)	142, 328, 339, 367
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	469
MboII	GAAGA	2 cut(s)	134, 242
MfeI	CAATTG	1 cut(s)	71
MlsI	TGGCCA	1 cut(s)	153
MluCI	AATT	2 cut(s)	71, 126
MluNI	TGGCCA	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	70
MnlI	CCTC	2 cut(s)	435, 448
Mox20I	TGGCCA	1 cut(s)	153
Mph1103I	ATGCAT	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	126
MscI	TGGCCA	1 cut(s)	153
Msp20I	TGGCCA	1 cut(s)	153
MunI	CAATTG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	4 cut(s)	322, 349, 364, 379
NsiI	ATGCAT	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	283, 416
PflMI	CCANNNNNTGG	1 cut(s)	170
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	136
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	1 cut(s)	70
SetI	ASST	7 cut(s)	21, 41, 160, 178, 279, 327, 459
SfaNI	GCATC	4 cut(s)	142, 328, 339, 367
SinI	GGWCC	1 cut(s)	173
Sse9I	AATT	2 cut(s)	71, 126
SsiI	CCGC	3 cut(s)	203, 206, 428
TaiI	ACGT	1 cut(s)	41
TasI	AATT	2 cut(s)	71, 126
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	2 cut(s)	283, 416
TscAI	CASTG	1 cut(s)	120
TseI	GCWGC	9 cut(s)	214, 298, 301, 316, 340, 352, 355, 379, 382
TspDTI	ATGAA	2 cut(s)	197, 275
TspGWI	ACGGA	1 cut(s)	409
TspRI	CASTG	1 cut(s)	120
Van91I	CCANNNNNTGG	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	126
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.