Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

19005173 .. 19005583

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1102900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTGCGATTCGCACGGGTGGCCGTCGAGTCACTCGCAGTACATGTTCTTCTTCGCCACATACTTCACCCTCTTGACTTACAAGGGGATTGGGCTCTGGGACACCAAGAACAAGTTGGCGGTGGTTTTTCTTCCATGGGTTCTGGCTTTGCTGACTATGTTTTCGAGGGTTTATTTGGGTTACCACACGGTGGCTCAGGTGTTTGCGGGATCGGCTTTTGGAGTGTTTCTCGGGGCGGTGTGGTTCTGGGTTGTGAACTCTGTGCTTTACCGTAGCTTTCCGATGATCGAAGAGAGCTGGTTTGGGAGGTATTTTTATATCAAGGATACTTCTCATATACCCAATGTGTTGAAGTTTGAGTATGATAATGCGCGGGATGCGAGGAGTAAACTGGCTGCCAAGATTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009856 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0022414 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0048856 GO:0048868 GO:0051704 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

137

Amino Acids

15.83

Weight (kDa)

9.24

Isoelectric Point (pI)

35.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	5 - 86	2.2e-14	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	190
AccII	CGCG	1 cut(s)	373
AciI	CCGC	4 cut(s)	119, 206, 236, 373
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	1 cut(s)	20
AdeI	CACNNNGTG	1 cut(s)	190
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	42
AgsI	TTSAA	1 cut(s)	352
AluBI	AGCT	2 cut(s)	276, 297
AluI	AGCT	2 cut(s)	276, 297
AlwI	GGATC	1 cut(s)	217
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	395
ArsI	GACNNNNNNTTYG	2 cut(s)	145, 177
AspLEI	GCGC	1 cut(s)	373
AsuHPI	GGTGA	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	96
BarI	GAAGNNNNNNTAC	2 cut(s)	32, 64
BbvI	GCAGC	1 cut(s)	382
BceAI	ACGGC	1 cut(s)	7
BciVI	GTATCC	1 cut(s)	319
BfuI	GTATCC	1 cut(s)	319
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
BmeT110I	CYCGRG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	367
BplI	GAGNNNNNCTC	2 cut(s)	213, 245
Bpu10I	CCTNAGC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	382
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	1 cut(s)	396
BseRI	GAGGAG	1 cut(s)	397
BseXI	GCAGC	1 cut(s)	382
Bsh1236I	CGCG	1 cut(s)	373
BshFI	GGCC	1 cut(s)	22
BsiHKCI	CYCGRG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	209, 285
Bsp19I	CCATGG	1 cut(s)	134
BspACI	CCGC	4 cut(s)	119, 206, 236, 373
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	373
BspPI	GGATC	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	396
BssECI	CCNNGG	1 cut(s)	134
BssMI	GATC	2 cut(s)	209, 285
BssT1I	CCWWGG	1 cut(s)	134
Bst4CI	ACNGT	2 cut(s)	190, 272
Bst6I	CTCTTC	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	195
BstDSI	CCRYGG	1 cut(s)	134
BstEII	GGTNACC	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	382
BstFNI	CGCG	1 cut(s)	373
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	2 cut(s)	212, 288
BstMBI	GATC	2 cut(s)	209, 285
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 212, 377
BstNSI	RCATGY	1 cut(s)	46
BstPI	GGTNACC	1 cut(s)	179
BstUI	CGCG	1 cut(s)	373
BstV1I	GCAGC	1 cut(s)	382
BsuI	GTATCC	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	22
BtgI	CCRYGG	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	382
CfoI	GCGC	1 cut(s)	373
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	2 cut(s)	43, 135
CviJI	RGCY	8 cut(s)	22, 94, 146, 194, 215, 276, 297, 395
CviKI_1	RGCY	8 cut(s)	22, 94, 146, 194, 215, 276, 297, 395
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	2 cut(s)	211, 287
DpnII	GATC	2 cut(s)	209, 285
DraIII	CACNNNGTG	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	20
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	230
Eco91I	GGTNACC	1 cut(s)	179
EcoO65I	GGTNACC	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	134
FaeI	CATG	2 cut(s)	46, 138
FaiI	YATR	8 cut(s)	44, 61, 136, 158, 318, 336, 338, 363
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	2 cut(s)	42, 134
FauI	CCCGC	2 cut(s)	199, 366
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	1 cut(s)	389
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	396
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	22
HhaI	GCGC	1 cut(s)	373
Hin1II	CATG	2 cut(s)	46, 138
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HinfI	GANTC	2 cut(s)	8, 28
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	256, 389
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	2 cut(s)	256, 389
Hpy99I	CGWCG	1 cut(s)	28
HpyCH4III	ACNGT	2 cut(s)	190, 272
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 212, 377
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	46, 138
HspAI	GCGC	1 cut(s)	371
Kzo9I	GATC	2 cut(s)	209, 285
LpnPI	CCDG	6 cut(s)	82, 128, 182, 232, 283, 377
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	1 cut(s)	367
MaeIII	GTNAC	2 cut(s)	29, 179
MalI	GATC	2 cut(s)	211, 287
MboI	GATC	2 cut(s)	209, 285
MboII	GAAGA	4 cut(s)	40, 43, 122, 302
MhlI	GDGCHC	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	4 cut(s)	80, 159, 300, 375
MseI	TTAA	1 cut(s)	405
MvnI	CGCG	1 cut(s)	373
MwoI	GCNNNNNNNGC	3 cut(s)	19, 212, 377
NcoI	CCATGG	1 cut(s)	134
NdeII	GATC	2 cut(s)	209, 285
NlaIII	CATG	2 cut(s)	46, 138
NmuCI	GTSAC	1 cut(s)	29
NspI	RCATGY	1 cut(s)	46
PciI	ACATGT	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	397
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
PscI	ACATGT	1 cut(s)	42
PspEI	GGTNACC	1 cut(s)	179
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	2 cut(s)	209, 285
SchI	GAGTC	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	4 cut(s)	201, 278, 299, 311
SfaNI	GCATC	1 cut(s)	367
SsiI	CCGC	4 cut(s)	119, 206, 236, 373
StyI	CCWWGG	1 cut(s)	134
TaaI	ACNGT	2 cut(s)	190, 272
TaqI	TCGA	3 cut(s)	26, 164, 288
TatI	WGTACW	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	29
Van91I	CCANNNNNTGG	1 cut(s)	190
XceI	RCATGY	1 cut(s)	46
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.