Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6036683 .. 6037273

Gene Structure 591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1038000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTGGCGTATACGAAGAACGGGGATAGGCTTGTGGGCCAGATTGCCAAACGACAGGCCGTTGTGAACCCTGAGAACACCTTCTTCTCTGTGAAGAGGTTCATTGGGAGGAGGATGTCTGAGGTGGACGAGGAGTCGAAGCAGGTCTCGTACAAGGTCGTAAGGGATGCGAATGGGAATGTCAAGACCGACTGCCCTGCTATCGGCAAGCAGTTCGCCGCTGAAGAAATTTCAGCTCAGGTGTTGAGGAAGCTTGTGGATGATTCTTCAAAGTTTTTGAATGATAAAGTTGGTAAAGCAGTGATCACTGTGCCTGCTTACTTTAATGACTCTCAAAGAACTGCTACAAAAGATGCCGACCGTATTGCTGGTTTGGAAGTTCTTAGGATTATAAATGAACCTACTGCTGCTTCTTTAGCATACGGCTTTGACAGGAAGAACAATGAAACTATCTTGGTATTTGACCTTGGAGGTGGTACTTTCGATGTTTCAGTACTTGAGGTTGGTGATGGTGTGTTTGAAGTGCTATCTACTTCAGGAGATACGCATTTGGGGGGCAAAACCGTCAACAGCACTAGGAAGACTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0010035 GO:0010038 GO:0015031 GO:0015833 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046686 GO:0046907 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70

Protein Analysis

197

Amino Acids

21.34

Weight (kDa)

7.77

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	1 - 189	6e-86	Hsp70 protein
MreB_Mbl	PF06723	59 - 180	6.9e-11	MreB/Mbl protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	392
Acc36I	ACCTGC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	11
AciI	CCGC	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	228
AcuI	CTGAAG	2 cut(s)	243, 519
AfaI	GTAC	3 cut(s)	152, 478, 495
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	270, 280, 521
AhdI	GACNNNNNGTC	1 cut(s)	133
AluBI	AGCT	2 cut(s)	236, 253
AluI	AGCT	2 cut(s)	236, 253
Alw26I	GTCTC	1 cut(s)	151
AoxI	GGCC	2 cut(s)	37, 57
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	1 cut(s)	228
Asp700I	GAANNNNTTC	2 cut(s)	80, 98
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	518
BbsI	GAAGAC	1 cut(s)	587
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	1 cut(s)	503
BceAI	ACGGC	2 cut(s)	44, 439
BcgI	CGANNNNNNTGC	6 cut(s)	179, 196, 213, 230, 347, 381
BclI	TGATCA	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	151
BfaI	CTAG	1 cut(s)	576
BfuAI	ACCTGC	1 cut(s)	133
BisI	GCNGC	2 cut(s)	219, 408
BlsI	GCNGC	2 cut(s)	220, 409
BmcAI	AGTACT	1 cut(s)	495
BmeRI	GACNNNNNGTC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	37
BmsI	GCATC	2 cut(s)	157, 343
BpiI	GAAGAC	1 cut(s)	587
Bpu10I	CCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	518
BsaI	GGTCTC	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	466
BseGI	GGATG	3 cut(s)	120, 172, 265
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	3 cut(s)	63, 111, 251
BseRI	GAGGAG	2 cut(s)	124, 146
BseXI	GCAGC	1 cut(s)	394
Bsh1285I	CGRYCG	1 cut(s)	361
BshFI	GGCC	2 cut(s)	39, 59
BsiEI	CGRYCG	1 cut(s)	361
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	151
BsnI	GGCC	2 cut(s)	39, 59
Bso31I	GGTCTC	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	303
BspACI	CCGC	1 cut(s)	219
BspANI	GGCC	2 cut(s)	39, 59
BspCNI	CTCAG	3 cut(s)	64, 112, 250
BspHI	TCATGA	1 cut(s)	587
BspMI	ACCTGC	1 cut(s)	133
BspTNI	GGTCTC	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	466
BssMI	GATC	1 cut(s)	303
BssNAI	GTATAC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	466
Bst1107I	GTATAC	1 cut(s)	12
Bst4CI	ACNGT	3 cut(s)	310, 362, 565
Bst6I	CTCTTC	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	209, 315
BstDEI	CTNAG	4 cut(s)	72, 120, 237, 383
BstF5I	GGATG	3 cut(s)	120, 172, 265
BstKTI	GATC	1 cut(s)	306
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	303
BstMCI	CGRYCG	1 cut(s)	361
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstV1I	GCAGC	1 cut(s)	394
BstV2I	GAAGAC	1 cut(s)	587
BstZ17I	GTATAC	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	39, 59
BtsCI	GGATG	3 cut(s)	120, 172, 265
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	306, 306
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	2 cut(s)	209, 315
CciI	TCATGA	1 cut(s)	587
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	3 cut(s)	151, 477, 494
CviAII	CATG	1 cut(s)	588
CviJI	RGCY	6 cut(s)	31, 39, 59, 236, 253, 426
CviKI_1	RGCY	6 cut(s)	31, 39, 59, 236, 253, 426
CviQI	GTAC	3 cut(s)	151, 477, 494
DdeI	CTNAG	4 cut(s)	72, 120, 237, 383
DpnI	GATC	1 cut(s)	305
DpnII	GATC	1 cut(s)	303
DriI	GACNNNNNGTC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	89
Eam1105I	GACNNNNNGTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	466
Eco31I	GGTCTC	1 cut(s)	151
Eco57I	CTGAAG	2 cut(s)	243, 519
EcoT14I	CCWWGG	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	466
FaeI	CATG	1 cut(s)	591
FaiI	YATR	4 cut(s)	12, 392, 421, 589
FatI	CATG	1 cut(s)	587
FbaI	TGATCA	1 cut(s)	303
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	2 cut(s)	219, 408
FokI	GGATG	3 cut(s)	127, 179, 272
Fsp4HI	GCNGC	2 cut(s)	219, 408
FspBI	CTAG	1 cut(s)	576
GluI	GCNGC	2 cut(s)	219, 408
HaeIII	GGCC	2 cut(s)	39, 59
Hin1II	CATG	1 cut(s)	591
HincII	GTYRAC	1 cut(s)	568
HindII	GTYRAC	1 cut(s)	568
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	3 cut(s)	134, 263, 329
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	4 cut(s)	12, 67, 127, 568
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	3 cut(s)	184, 537, 588
Hpy8I	GTNNAC	4 cut(s)	12, 67, 127, 568
HpyAV	CCTTC	1 cut(s)	91
HpyCH4III	ACNGT	3 cut(s)	310, 362, 565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	4 cut(s)	72, 120, 237, 383
Hsp92II	CATG	1 cut(s)	591
Ksp22I	TGATCA	1 cut(s)	303
Kzo9I	GATC	1 cut(s)	303
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	2 cut(s)	157, 343
MaeI	CTAG	1 cut(s)	576
MalI	GATC	1 cut(s)	305
MboI	GATC	1 cut(s)	303
MboII	GAAGA	6 cut(s)	28, 76, 106, 236, 258, 448
MluCI	AATT	1 cut(s)	228
MlyI	GAGTC	2 cut(s)	143, 323
MnlI	CCTC	8 cut(s)	90, 102, 105, 115, 124, 240, 464, 493
MroXI	GAANNNNTTC	2 cut(s)	80, 98
MseI	TTAA	1 cut(s)	324
MspA1I	CMGCKG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	416
NdeII	GATC	1 cut(s)	303
NlaIII	CATG	1 cut(s)	591
PagI	TCATGA	1 cut(s)	587
PdmI	GAANNNNTTC	2 cut(s)	80, 98
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	220, 409
PleI	GAGTC	2 cut(s)	142, 323
PpsI	GAGTC	2 cut(s)	142, 323
PsiI	TTATAA	1 cut(s)	392
PspPI	GGNCC	1 cut(s)	37
RsaI	GTAC	3 cut(s)	152, 478, 495
RsaNI	GTAC	3 cut(s)	151, 477, 494
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	2 cut(s)	219, 408
Sau3AI	GATC	1 cut(s)	303
Sau96I	GGNCC	1 cut(s)	37
ScaI	AGTACT	1 cut(s)	495
SchI	GAGTC	2 cut(s)	143, 323
SfaNI	GCATC	2 cut(s)	157, 343
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	1 cut(s)	228
SsiI	CCGC	1 cut(s)	219
SspMI	CTAG	1 cut(s)	576
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	3 cut(s)	310, 362, 565
TaqI	TCGA	2 cut(s)	137, 483
TaqII	GACCGA	1 cut(s)	203
TasI	AATT	1 cut(s)	228
TatI	WGTACW	1 cut(s)	493
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	306, 313
TseI	GCWGC	1 cut(s)	407
TspDTI	ATGAA	4 cut(s)	91, 411, 459, 576
TspRI	CASTG	2 cut(s)	306, 313
XapI	RAATTY	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	11
XmnI	GAANNNNTTC	2 cut(s)	80, 98
XspI	CTAG	1 cut(s)	576
ZrmI	AGTACT	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.