MD05G1276800.v1.1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
N/A
Physical Location & Seq
Forward (+)
41153336 .. 41158164
4829 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1276800.v1.1.491

Sequence Viewer

Length: 726 bp
ATGGAGGATAGTAATTTGCTGGGAATAATGAGGAAATGTGCCTGGACTCAACAGGAAGATGATATTCTGAGGCAGTGCGTTGAAAAGCATGGAGATGGAAAGTGGCACCACGTTCCTCGCGAAACAGCTTCTCAGCCCTCTGAGTTTTTACTTAACGATATTCGTCAATCTGCTAGTATCGCTCTAAATCTCCTTGCTAGTGCCCCAACTGTTGTCGTCATGAAACTCTGCTTCATTGGCTTCATCACGGCTCTTCATGTGTTCGGCAAGCTGTACCTCCACCGATCTAGGTCCATAACTCCAATGTCAGCTATTACATCAACAGGAAACTACAAATTTGAAGTGTGTACATGGGTGGGCAACTGCAAATTTGAAAGGAATTTGATTGGAGGTATTCAAGGAAAACTAAAGTCTTCTAAGTGGTCAATAATTGCTGGAAGACTCCCAGGAAGAACAGCAGGCAAGGTAAAAAATTATTGGAATAGCAAGCAACGAAAGGAGTTGGAATATATGAAGGATAAATCCAAAGAAAGAACAAAAGCCACATCCGTCATAAGACCTCAACCACGGAGGGCTAGAGTTGCAATTTTTCAATCTGAAGAGAACTGTAGCAGGTTATTACAGACATCATCACCACCTACAGAAAATGCTATTGATTCATGGAAGACCATGTTGCATGATACAGACAATCTCATTTCTCAAAACCTTTGTCACCTTCTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

242

Amino Acids

27.41

Weight (kDa)

9.58

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 13 - 40 2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 603
AccB1I GGYRCC 1 cut(s) 105
AccII CGCG 1 cut(s) 120
AcsI RAATTY 3 cut(s) 335, 368, 379
AcuI CTGAAG 1 cut(s) 618
AfaI GTAC 2 cut(s) 275, 349
AgsI TTSAA 5 cut(s) 83, 341, 374, 398, 593
AjnI CCWGG 2 cut(s) 41, 445
AluBI AGCT 3 cut(s) 128, 271, 311
AluI AGCT 3 cut(s) 128, 271, 311
ApoI RAATTY 3 cut(s) 335, 368, 379
ArsI GACNNNNNNTTYG 2 cut(s) 694, 726
AspS9I GGNCC 1 cut(s) 291
AsuHPI GGTGA 2 cut(s) 624, 704
AvaII GGWCC 1 cut(s) 291
BaeGI GKGCMC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 105
BbsI GAAGAC 3 cut(s) 405, 445, 671
BccI CCATC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 264
BciT130I CCWGG 2 cut(s) 43, 447
BfaI CTAG 4 cut(s) 174, 198, 288, 576
BfmI CTRYAG 2 cut(s) 607, 639
BfuAI ACCTGC 1 cut(s) 603
Bme1390I CCNGG 2 cut(s) 43, 447
Bme18I GGWCC 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 1 cut(s) 107
BmrFI CCNGG 2 cut(s) 43, 447
BpiI GAAGAC 3 cut(s) 405, 445, 671
BsaJI CCNNGG 2 cut(s) 445, 566
BseBI CCWGG 2 cut(s) 43, 447
BseDI CCNNGG 2 cut(s) 445, 566
BseGI GGATG 1 cut(s) 545
BseMII CTCAG 3 cut(s) 59, 132, 146
BseSI GKGCMC 1 cut(s) 205
BseYI CCCAGC 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 120
BshNI GGYRCC 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 205
Bsp1407I TGTACA 1 cut(s) 347
Bsp143I GATC 1 cut(s) 284
Bsp68I TCGCGA 1 cut(s) 120
BspCNI CTCAG 3 cut(s) 60, 133, 145
BspFNI CGCG 1 cut(s) 120
BspHI TCATGA 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 107
BspMI ACCTGC 1 cut(s) 603
BspQI GCTCTTC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 105
BsrGI TGTACA 1 cut(s) 347
BssECI CCNNGG 2 cut(s) 445, 566
BssMI GATC 1 cut(s) 284
Bst2UI CCWGG 2 cut(s) 43, 447
Bst4CI ACNGT 2 cut(s) 211, 608
Bst6I CTCTTC 2 cut(s) 258, 594
BstAUI TGTACA 1 cut(s) 347
BstC8I GCNNGC 3 cut(s) 269, 460, 488
BstDEI CTNAG 4 cut(s) 68, 132, 141, 417
BstDSI CCRYGG 1 cut(s) 566
BstF5I GGATG 1 cut(s) 545
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 1 cut(s) 287
BstMBI GATC 1 cut(s) 284
BstMWI GCNNNNNNNGC 3 cut(s) 179, 237, 581
BstNI CCWGG 2 cut(s) 43, 447
BstSCI CCNGG 2 cut(s) 41, 445
BstSFI CTRYAG 2 cut(s) 607, 639
BstSLI GKGCMC 1 cut(s) 205
BstUI CGCG 1 cut(s) 120
BstV2I GAAGAC 3 cut(s) 405, 445, 671
BtgI CCRYGG 1 cut(s) 566
BtsCI GGATG 1 cut(s) 545
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 80
BtuMI TCGCGA 1 cut(s) 120
BveI ACCTGC 1 cut(s) 603
Cac8I GCNNGC 3 cut(s) 269, 460, 488
CciI TCATGA 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 291
Csp6I GTAC 2 cut(s) 274, 348
CviAII CATG 7 cut(s) 89, 220, 257, 351, 660, 670, 677
CviJI RGCY 8 cut(s) 128, 136, 240, 251, 271, 311, 542, 575
CviKI_1 RGCY 8 cut(s) 128, 136, 240, 251, 271, 311, 542, 575
CviQI GTAC 2 cut(s) 274, 348
DdeI CTNAG 4 cut(s) 68, 132, 141, 417
DpnI GATC 1 cut(s) 286
DpnII GATC 1 cut(s) 284
Eam1104I CTCTTC 2 cut(s) 258, 594
EarI CTCTTC 2 cut(s) 258, 594
Eco47I GGWCC 1 cut(s) 291
Eco57I CTGAAG 1 cut(s) 618
EcoRII CCWGG 2 cut(s) 41, 445
FaeI CATG 7 cut(s) 92, 223, 260, 354, 663, 673, 680
FatI CATG 7 cut(s) 88, 219, 256, 350, 659, 669, 676
FokI GGATG 1 cut(s) 532
FspBI CTAG 4 cut(s) 174, 198, 288, 576
GsaI CCCAGC 1 cut(s) 23
Hin1II CATG 7 cut(s) 92, 223, 260, 354, 663, 673, 680
HinfI GANTC 3 cut(s) 46, 441, 656
HphI GGTGA 2 cut(s) 624, 704
Hpy166II GTNNAC 1 cut(s) 348
Hpy188I TCNGA 3 cut(s) 69, 142, 598
Hpy188III TCNNGA 2 cut(s) 119, 220
Hpy8I GTNNAC 1 cut(s) 348
HpyAV CCTTC 2 cut(s) 508, 725
HpyCH4III ACNGT 2 cut(s) 211, 608
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 3 cut(s) 366, 584, 676
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 237, 581
HpyF3I CTNAG 4 cut(s) 68, 132, 141, 417
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 7 cut(s) 92, 223, 260, 354, 663, 673, 680
Kzo9I GATC 1 cut(s) 284
LguI GCTCTTC 1 cut(s) 258
MaeI CTAG 4 cut(s) 174, 198, 288, 576
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 710
MalI GATC 1 cut(s) 286
MboI GATC 1 cut(s) 284
MboII GAAGA 7 cut(s) 68, 245, 405, 450, 462, 611, 676
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 7 cut(s) 13, 335, 368, 379, 429, 472, 585
MlyI GAGTC 2 cut(s) 40, 435
MmeI TCCRAC 1 cut(s) 483
MnlI CCTC 8 cut(s) 24, 63, 126, 148, 287, 383, 564, 570
MseI TTAA 2 cut(s) 153, 724
MslI CAYNNNNRTG 1 cut(s) 93
MspR9I CCNGG 2 cut(s) 43, 447
MvaI CCWGG 2 cut(s) 43, 447
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 3 cut(s) 179, 237, 581
NdeII GATC 1 cut(s) 284
NlaIII CATG 7 cut(s) 92, 223, 260, 354, 663, 673, 680
NlaIV GGNNCC 1 cut(s) 107
NmuCI GTSAC 1 cut(s) 710
NruI TCGCGA 1 cut(s) 120
PagI TCATGA 1 cut(s) 219
PciSI GCTCTTC 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PfeI GAWTC 1 cut(s) 656
PleI GAGTC 2 cut(s) 40, 435
PpsI GAGTC 2 cut(s) 40, 435
Psp6I CCWGG 2 cut(s) 41, 445
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 2 cut(s) 41, 445
PspN4I GGNNCC 1 cut(s) 107
PspPI GGNCC 1 cut(s) 291
RruI TCGCGA 1 cut(s) 120
RsaI GTAC 2 cut(s) 275, 349
RsaNI GTAC 2 cut(s) 274, 348
RseI CAYNNNNRTG 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 258
SaqAI TTAA 2 cut(s) 153, 724
Sau3AI GATC 1 cut(s) 284
Sau96I GGNCC 1 cut(s) 291
SchI GAGTC 2 cut(s) 40, 435
ScrFI CCNGG 2 cut(s) 43, 447
SduI GDGCHC 1 cut(s) 205
SfcI CTRYAG 2 cut(s) 607, 639
SinI GGWCC 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 93
Sse9I AATT 7 cut(s) 13, 335, 368, 379, 429, 472, 585
SspMI CTAG 4 cut(s) 174, 198, 288, 576
StyD4I CCNGG 2 cut(s) 41, 445
TaaI ACNGT 2 cut(s) 211, 608
TaiI ACGT 1 cut(s) 114
TasI AATT 7 cut(s) 13, 335, 368, 379, 429, 472, 585
TatI WGTACW 1 cut(s) 347
TfiI GAWTC 1 cut(s) 656
Tru1I TTAA 2 cut(s) 153, 724
Tru9I TTAA 2 cut(s) 153, 724
TscAI CASTG 1 cut(s) 80
TseFI GTSAC 1 cut(s) 710
Tsp45I GTSAC 1 cut(s) 710
TspDTI ATGAA 6 cut(s) 223, 232, 236, 245, 527, 648
TspGWI ACGGA 2 cut(s) 538, 583
TspRI CASTG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 291
XapI RAATTY 3 cut(s) 335, 368, 379
XspI CTAG 4 cut(s) 174, 198, 288, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.