MD05G1355000.v1.1
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
N/A
Physical Location & Seq
Forward (+)
47150138 .. 47155528
5391 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1355000.v1.1.491

Sequence Viewer

Length: 948 bp
ATGGTCATGCTTGTGGGTCAGTATTCAACTGGGAAAACAACATTTATTAAACATTTGTTACGATGCAACTATCCAGGAGCTCACATTGGACCAGAACCTACTACAGATAGATTCGTTGTACTGATGTCTGGACCTGATGAGAGGAGTATTCCTGGAAATACTATAGTTGTTCATGCAGACCTGCCTTCCAGTGATCTAACAACTTTCGGAGGTGCATTTTTATCAAAATTTGAGTGTTCACAAATGCCACATCCAACACCCCTGGAGTTCTATCTGAAGAAAAGCAACGAACAAGGGAGCTACGATTTCACTGTTGCTATATCATGGTTTGCAGCAAAATGTGATGTCATTCTTCTTCTGTTTAATCCTCATACGCTCGACATCAGCGATGAATTTAAACGTGTAATTTCATCTCTGCATGGTCATGATGACAAGATTCGAGTGGTCTTGAATAAAGCTGATCAAGTTGATACTCAACAAGTGAGATGTACCTCGCGTTTATATTGCCTATTATACTTTTTGTTGAAAGAAATTTTCAAGTTCTTAACTTTTTGTCTACATACTGAAGCTGATGAGAGTTTATGGGGCATTGATGTGGTCGCTTGGAAAAGTTGTGAATATTCCAGAGGTTGTGCCTCATTCAATGATAAGCCTGTCAACGAAGGAATTGTTGGTCCTATCGGCAAAGAACTGTTTGAAAAAGAACAAGATGACCTCCTATCAGATCTGGTTGATATACCTAAGAAAGCATGTGATCGCCGGGTTCAGAGGGACTTTCATTTACCAGCCGGCGACTTTCCAGACGTGGAGCACTTCCGGGAGGTGTTGGGCGGCTATAACATCGATAAATTCGACAAGTTGAAGCCGAAAATGATTCAAGCTGTGGATGACATGCTTGGCTATGACATCCCTGAGCTTTTAAAGAAATTCAGAAATCCCTACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0005911 GO:0005929 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0009506 GO:0009719 GO:0009987 GO:0010008 GO:0010033 GO:0010830 GO:0010831 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0020016 GO:0020018 GO:0022008 GO:0022603 GO:0022607 GO:0030030 GO:0030031 GO:0030054 GO:0030154 GO:0030182 GO:0031090 GO:0031175 GO:0031253 GO:0031410 GO:0031901 GO:0031982 GO:0032386 GO:0032388 GO:0032456 GO:0032501 GO:0032502 GO:0032879 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044441 GO:0044444 GO:0044446 GO:0044459 GO:0044463 GO:0044464 GO:0044782 GO:0045184 GO:0045595 GO:0045597 GO:0046907 GO:0048468 GO:0048518 GO:0048522 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051493 GO:0051641 GO:0051649 GO:0051716 GO:0055037 GO:0055038 GO:0055044 GO:0060142 GO:0060143 GO:0060170 GO:0060271 GO:0060341 GO:0060627 GO:0061512 GO:0065003 GO:0065007 GO:0070727 GO:0070848 GO:0070887 GO:0070925 GO:0071310 GO:0071363 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098590 GO:0098657 GO:0098805 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901739 GO:1901741 GO:1990089 GO:1990090 GO:2001135 GO:2001137
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Dynamin_N EF-hand_4 EF-hand_7 EHD_N

Protein Analysis

316

Amino Acids

35.84

Weight (kDa)

5.59

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 2 - 51 5.4e-06 Dynamin family
DUF5600 PF18150 253 - 306 3.9e-14 Domain of unknown function (DUF5600)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 189
AccI GTMKAC 1 cut(s) 556
AccII CGCG 1 cut(s) 496
AciI CCGC 1 cut(s) 831
AcsI RAATTY 5 cut(s) 227, 392, 531, 848, 926
AcuI CTGAAG 2 cut(s) 296, 585
AfaI GTAC 2 cut(s) 120, 490
AflIII ACRYGT 1 cut(s) 400
AgsI TTSAA 8 cut(s) 27, 451, 526, 538, 643, 698, 862, 878
AjiI CACGTC 1 cut(s) 805
AjnI CCWGG 3 cut(s) 73, 151, 261
AjuI GAANNNNNNNTTGG 2 cut(s) 654, 686
AluBI AGCT 6 cut(s) 80, 300, 458, 569, 881, 916
AluI AGCT 6 cut(s) 80, 300, 458, 569, 881, 916
Alw21I GWGCWC 2 cut(s) 82, 813
ApeKI GCWGC 1 cut(s) 332
ApoI RAATTY 5 cut(s) 227, 392, 531, 848, 926
AspS9I GGNCC 3 cut(s) 89, 131, 674
AsuC2I CCSGG 2 cut(s) 761, 818
AvaII GGWCC 3 cut(s) 89, 131, 674
BanII GRGCYC 1 cut(s) 82
Bbv12I GWGCWC 2 cut(s) 82, 813
BbvI GCAGC 1 cut(s) 344
BciT130I CCWGG 3 cut(s) 75, 153, 263
BclI TGATCA 1 cut(s) 460
BcnI CCSGG 2 cut(s) 761, 818
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 1 cut(s) 189
BglII AGATCT 1 cut(s) 724
BisI GCNGC 2 cut(s) 333, 832
BlsI GCNGC 2 cut(s) 334, 833
Bme1390I CCNGG 5 cut(s) 75, 153, 263, 761, 818
Bme18I GGWCC 3 cut(s) 89, 131, 674
BmgBI CACGTC 1 cut(s) 805
BmgT120I GGNCC 3 cut(s) 89, 131, 674
BmrFI CCNGG 5 cut(s) 75, 153, 263, 761, 818
BmrI ACTGGG 1 cut(s) 39
BmsI GCATC 1 cut(s) 53
BmuI ACTGGG 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 284
Bpu10I CCTNAGC 1 cut(s) 912
BpuMI CCSGG 2 cut(s) 761, 818
Bsa29I ATCGAT 1 cut(s) 843
BsaJI CCNNGG 1 cut(s) 261
Bse118I RCCGGY 1 cut(s) 788
Bse1I ACTGG 2 cut(s) 34, 189
BseBI CCWGG 3 cut(s) 75, 153, 263
BseCI ATCGAT 1 cut(s) 843
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 3 cut(s) 250, 892, 906
BseMII CTCAG 1 cut(s) 903
BseNI ACTGG 2 cut(s) 34, 189
BseRI GAGGAG 1 cut(s) 157
BseXI GCAGC 1 cut(s) 344
Bsh1236I CGCG 1 cut(s) 496
BshVI ATCGAT 1 cut(s) 843
BsiHKAI GWGCWC 2 cut(s) 82, 813
BsiSI CCGG 3 cut(s) 760, 789, 817
BslFI GGGAC 1 cut(s) 785
BsmFI GGGAC 1 cut(s) 785
Bsp1286I GDGCHC 2 cut(s) 82, 813
Bsp143I GATC 4 cut(s) 193, 460, 724, 754
BspACI CCGC 1 cut(s) 831
BspCNI CTCAG 1 cut(s) 904
BspDI ATCGAT 1 cut(s) 843
BspFNI CGCG 1 cut(s) 496
BspHI TCATGA 1 cut(s) 424
BspMI ACCTGC 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 788
BsrI ACTGG 2 cut(s) 34, 189
BssAI RCCGGY 1 cut(s) 788
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 4 cut(s) 193, 460, 724, 754
Bst2UI CCWGG 3 cut(s) 75, 153, 263
Bst4CI ACNGT 2 cut(s) 313, 693
BstC8I GCNNGC 1 cut(s) 790
BstDEI CTNAG 2 cut(s) 741, 912
BstF5I GGATG 3 cut(s) 250, 892, 906
BstFNI CGCG 1 cut(s) 496
BstKTI GATC 4 cut(s) 196, 463, 727, 757
BstMBI GATC 4 cut(s) 193, 460, 724, 754
BstNI CCWGG 3 cut(s) 75, 153, 263
BstNSI RCATGY 2 cut(s) 753, 895
BstSCI CCNGG 5 cut(s) 73, 151, 261, 759, 816
BstSFI CTRYAG 2 cut(s) 102, 162
BstUI CGCG 1 cut(s) 496
BstV1I GCAGC 1 cut(s) 344
BstX2I RGATCY 1 cut(s) 724
BstYI RGATCY 1 cut(s) 724
Bsu15I ATCGAT 1 cut(s) 843
BsuTUI ATCGAT 1 cut(s) 843
BtgZI GCGATG 1 cut(s) 402
BtrI CACGTC 1 cut(s) 805
BtsCI GGATG 3 cut(s) 250, 892, 906
BtsIMutI CAGTG 2 cut(s) 196, 309
BveI ACCTGC 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 790
CciI TCATGA 1 cut(s) 424
Cfr10I RCCGGY 1 cut(s) 788
Cfr13I GGNCC 3 cut(s) 89, 131, 674
ClaI ATCGAT 1 cut(s) 843
Csp6I GTAC 2 cut(s) 119, 489
CviAII CATG 7 cut(s) 7, 173, 324, 419, 425, 750, 892
CviQI GTAC 2 cut(s) 119, 489
DdeI CTNAG 2 cut(s) 741, 912
DpnI GATC 4 cut(s) 195, 462, 726, 756
DpnII GATC 4 cut(s) 193, 460, 724, 754
DraI TTTAAA 2 cut(s) 397, 921
Ecl136II GAGCTC 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 82
Eco47I GGWCC 3 cut(s) 89, 131, 674
Eco53kI GAGCTC 1 cut(s) 80
Eco57I CTGAAG 2 cut(s) 296, 585
EcoICRI GAGCTC 1 cut(s) 80
EcoRII CCWGG 3 cut(s) 73, 151, 261
EcoT38I GRGCYC 1 cut(s) 82
FaeI CATG 7 cut(s) 10, 176, 327, 422, 428, 753, 895
FaqI GGGAC 1 cut(s) 785
FatI CATG 7 cut(s) 6, 172, 323, 418, 424, 749, 891
FbaI TGATCA 1 cut(s) 460
FblI GTMKAC 1 cut(s) 556
Fnu4HI GCNGC 2 cut(s) 333, 832
FokI GGATG 3 cut(s) 237, 893, 899
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 2 cut(s) 333, 832
GluI GCNGC 2 cut(s) 333, 832
GsuI CTGGAG 1 cut(s) 284
HapII CCGG 3 cut(s) 760, 789, 817
Hin1II CATG 7 cut(s) 10, 176, 327, 422, 428, 753, 895
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HinfI GANTC 3 cut(s) 111, 436, 874
HpaII CCGG 3 cut(s) 760, 789, 817
Hpy166II GTNNAC 3 cut(s) 239, 557, 658
Hpy188I TCNGA 5 cut(s) 209, 276, 724, 768, 932
Hpy188III TCNNGA 5 cut(s) 129, 425, 448, 624, 800
Hpy8I GTNNAC 3 cut(s) 239, 557, 658
HpyAV CCTTC 2 cut(s) 195, 656
HpyCH4III ACNGT 2 cut(s) 313, 693
HpyCH4IV ACGT 2 cut(s) 400, 804
HpyCH4V TGCA 5 cut(s) 66, 176, 215, 332, 418
HpyF3I CTNAG 2 cut(s) 741, 912
HpySE526I ACGT 2 cut(s) 400, 804
Hsp92II CATG 7 cut(s) 10, 176, 327, 422, 428, 753, 895
KroI GCCGGC 1 cut(s) 788
KroNI GCCGGC 1 cut(s) 790
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 4 cut(s) 193, 460, 724, 754
LmnI GCTCC 3 cut(s) 77, 297, 808
Lsp1109I GCAGC 1 cut(s) 344
LweI GCATC 1 cut(s) 53
MaeII ACGT 2 cut(s) 400, 804
MaeIII GTNAC 1 cut(s) 57
MalI GATC 4 cut(s) 195, 462, 726, 756
MboI GATC 4 cut(s) 193, 460, 724, 754
MboII GAAGA 3 cut(s) 289, 344, 347
MfeI CAATTG 1 cut(s) 943
MflI RGATCY 1 cut(s) 724
MhlI GDGCHC 2 cut(s) 82, 813
MluCI AATT 8 cut(s) 227, 392, 405, 531, 666, 848, 926, 943
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 9 cut(s) 135, 203, 378, 502, 620, 646, 725, 762, 814
MroNI GCCGGC 1 cut(s) 788
MseI TTAA 5 cut(s) 48, 363, 396, 545, 920
MslI CAYNNNNRTG 3 cut(s) 11, 423, 593
MspI CCGG 3 cut(s) 760, 789, 817
MspR9I CCNGG 5 cut(s) 75, 153, 263, 761, 818
MunI CAATTG 1 cut(s) 943
MvaI CCWGG 3 cut(s) 75, 153, 263
MvnI CGCG 1 cut(s) 496
NaeI GCCGGC 1 cut(s) 790
NciI CCSGG 2 cut(s) 761, 818
NdeII GATC 4 cut(s) 193, 460, 724, 754
NgoMIV GCCGGC 1 cut(s) 788
NlaIII CATG 7 cut(s) 10, 176, 327, 422, 428, 753, 895
NspI RCATGY 2 cut(s) 753, 895
PagI TCATGA 1 cut(s) 424
PcsI WCGNNNNNNNCGW 2 cut(s) 384, 849
PdiI GCCGGC 1 cut(s) 790
PfeI GAWTC 3 cut(s) 111, 436, 874
PfoI TCCNGGA 3 cut(s) 73, 151, 816
PkrI GCNGC 2 cut(s) 334, 833
Psp124BI GAGCTC 1 cut(s) 82
Psp6I CCWGG 3 cut(s) 73, 151, 261
PspGI CCWGG 3 cut(s) 73, 151, 261
PspPI GGNCC 3 cut(s) 89, 131, 674
PsuI RGATCY 1 cut(s) 724
RsaI GTAC 2 cut(s) 120, 490
RsaNI GTAC 2 cut(s) 119, 489
RseI CAYNNNNRTG 3 cut(s) 11, 423, 593
SacI GAGCTC 1 cut(s) 82
SaqAI TTAA 5 cut(s) 48, 363, 396, 545, 920
SatI GCNGC 2 cut(s) 333, 832
Sau3AI GATC 4 cut(s) 193, 460, 724, 754
Sau96I GGNCC 3 cut(s) 89, 131, 674
ScrFI CCNGG 5 cut(s) 75, 153, 263, 761, 818
SduI GDGCHC 2 cut(s) 82, 813
SfaNI GCATC 1 cut(s) 53
SfcI CTRYAG 2 cut(s) 102, 162
SinI GGWCC 3 cut(s) 89, 131, 674
SmiMI CAYNNNNRTG 3 cut(s) 11, 423, 593
Sse9I AATT 8 cut(s) 227, 392, 405, 531, 666, 848, 926, 943
SsiI CCGC 1 cut(s) 831
SspI AATATT 1 cut(s) 620
SstI GAGCTC 1 cut(s) 82
StyD4I CCNGG 5 cut(s) 73, 151, 261, 759, 816
TaaI ACNGT 2 cut(s) 313, 693
TaiI ACGT 2 cut(s) 403, 807
TaqI TCGA 4 cut(s) 378, 439, 843, 852
TasI AATT 8 cut(s) 227, 392, 405, 531, 666, 848, 926, 943
TatI WGTACW 1 cut(s) 118
TauI GCSGC 1 cut(s) 834
TfiI GAWTC 3 cut(s) 111, 436, 874
Tru1I TTAA 5 cut(s) 48, 363, 396, 545, 920
Tru9I TTAA 5 cut(s) 48, 363, 396, 545, 920
TscAI CASTG 2 cut(s) 196, 316
TseI GCWGC 1 cut(s) 332
TspDTI ATGAA 4 cut(s) 161, 399, 405, 767
TspRI CASTG 2 cut(s) 196, 316
VpaK11BI GGWCC 3 cut(s) 89, 131, 674
XapI RAATTY 5 cut(s) 227, 392, 531, 848, 926
XceI RCATGY 2 cut(s) 753, 895
XmiI GTMKAC 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.