Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

9564578 .. 9565801

Gene Structure 1224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1091100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGGGAATGCTGGTGCAGCTCTCATTAGAGAGGTTGCCAGCAAGACCAATGACTCTGCTGGTGACGGAACAACAACTGCATCAATTCTTGCACGGGAAATAATCAAGCTAGGGCTCTTGAGTGTGACCTCTGGTGCAAATCCCGTTTCAATCAAGAAGGGTATTGAGAAAACGGTGCAAGGGCTGGTGGATGAACTAGAGAATAAGTCTAGGCCTGTTAAGGGTCGTGATGATGTTAAAGCTGTCGCATCTATTTCTGCCGGGAACGATGAGCAAATTGGGACAATGATTGCTAATGTTATTGACAAGGTTGGATCTGATGGTGTATTGTCCATTGAGTCATCATCTTCATTTGAGACCAGCGTCGAGGAAGAAGAAGGAATGGAGATTGACAGAGGATATATCTCTCCTCAATTCGTTACAAACCCTGAGAAGTTGGTTATTTCAGCTATCAAGGACATAATTCCTCTATTGGAGAAGACCACTCAGTTGAGAGCCCCTCTACTCATAATTGCTGAGGATGTCTCTGGGGAGGCTTTGGCGACTCTTGTTGTGAACAAGTTGAGGGGTATATTGAATGTTGCCGCTATCAAAGCTCCTGGTTTTGGTGAACGGAGAAAGGCTCTCCTCCAAGATATTGCCATTTTGACAGGAGCTGAGTTTCAAGCCAGCGATCTGAGTCTACTGGTTGAGAACACCTTAGTTGAGCAGCTTGGTTTGGCCCGGAAGGTGACAATCTCAAAGGACTCCACTACCATTATCACTGATGCAGCATCAAAAGATGAGTTGCAAGCCAGAATTGCACAGCTAAAGAAAGAGCTGTCCGACACGGATTCTATTTATGACACAGAAAAATTGGCTGAGAGGATTGCCAAATTGTCAGGTGGAGTTGCTGTTATAAAGGTCGGCGCTGCTACAGAGACCGAACTTGAGGACCATAAACTCCGTATTGAGGATGCCAAGAATGCTACTTTCGCTGCCATAGAGGAAGGGATTGTGCCTGGTGATGGTGCTGCTTTGCGGCTTGGAGCTGACATTGTCCAGAAGGCACTGGCAGCACCAGCAGCATTGACAGCTCAAAATGCTGGAATTGAACACGAAATCGTGGGCCGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0022414 GO:0022626 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051082 GO:0061077 GO:0061458 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

373

Amino Acids

39.04

Weight (kDa)

4.83

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	6 - 144	4.7e-19	TCP-1/cpn60 chaperonin family
Cpn60_TCP1	PF00118	156 - 340	1.9e-14	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	899
AccI	GTMKAC	1 cut(s)	682
AciI	CCGC	2 cut(s)	585, 1021
AclWI	GGATC	1 cut(s)	322
AfiI	CCNNNNNNNGG	4 cut(s)	221, 605, 952, 1007
AgsI	TTSAA	4 cut(s)	150, 577, 665, 1094
AjnI	CCWGG	2 cut(s)	598, 1000
Alw26I	GTCTC	3 cut(s)	350, 529, 914
AlwI	GGATC	1 cut(s)	322
AlwNI	CAGNNNCTG	1 cut(s)	656
AoxI	GGCC	3 cut(s)	212, 720, 1108
ApeKI	GCWGC	8 cut(s)	17, 709, 770, 911, 977, 1013, 1055, 1064
AspLEI	GCGC	1 cut(s)	911
AspS9I	GGNCC	3 cut(s)	721, 934, 1108
AsuC2I	CCSGG	2 cut(s)	262, 724
AsuHPI	GGTGA	4 cut(s)	74, 620, 742, 1016
AvaII	GGWCC	1 cut(s)	934
BanII	GRGCYC	2 cut(s)	117, 499
BbsI	GAAGAC	1 cut(s)	485
BbvCI	CCTCAGC	1 cut(s)	516
BbvI	GCAGC	8 cut(s)	29, 721, 782, 898, 964, 1000, 1067, 1076
BccI	CCATC	2 cut(s)	314, 1001
BciT130I	CCWGG	2 cut(s)	600, 1002
BcnI	CCSGG	2 cut(s)	262, 724
BcoDI	GTCTC	3 cut(s)	350, 529, 914
BfaI	CTAG	3 cut(s)	110, 197, 210
BfmI	CTRYAG	1 cut(s)	915
BfoI	RGCGCY	1 cut(s)	912
Bme1390I	CCNGG	4 cut(s)	262, 600, 724, 1002
Bme18I	GGWCC	1 cut(s)	934
BmgT120I	GGNCC	3 cut(s)	721, 934, 1108
BmrFI	CCNGG	4 cut(s)	262, 600, 724, 1002
BmsI	GCATC	5 cut(s)	89, 257, 757, 782, 946
BoxI	GACNNNNGTC	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	485
BplI	GAGNNNNNCTC	6 cut(s)	484, 516, 509, 541, 607, 639
Bpu10I	CCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	2 cut(s)	139, 950
BpuMI	CCSGG	2 cut(s)	262, 724
BsaI	GGTCTC	2 cut(s)	350, 914
BsaXI	ACNNNNNCTCC	2 cut(s)	879, 909
Bsc4I	CCNNNNNNNGG	4 cut(s)	221, 605, 952, 1007
Bse1I	ACTGG	2 cut(s)	690, 1056
BseBI	CCWGG	2 cut(s)	600, 1002
BseGI	GGATG	3 cut(s)	196, 526, 961
BseLI	CCNNNNNNNGG	4 cut(s)	221, 605, 952, 1007
BseMII	CTCAG	6 cut(s)	420, 500, 507, 648, 668, 852
BseNI	ACTGG	2 cut(s)	690, 1056
BseRI	GAGGAG	2 cut(s)	399, 617
BseXI	GCAGC	8 cut(s)	29, 721, 782, 898, 964, 1000, 1067, 1076
BsgI	GTGCAG	1 cut(s)	36
BshFI	GGCC	3 cut(s)	214, 722, 1110
BsiSI	CCGG	2 cut(s)	261, 724
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	4 cut(s)	221, 605, 952, 1007
BsmAI	GTCTC	3 cut(s)	350, 529, 914
BsmFI	GGGAC	1 cut(s)	295
BsmI	GAATGC	2 cut(s)	13, 970
BsnI	GGCC	3 cut(s)	214, 722, 1110
Bso31I	GGTCTC	2 cut(s)	350, 914
Bsp1286I	GDGCHC	2 cut(s)	117, 499
Bsp143I	GATC	2 cut(s)	314, 673
BspACI	CCGC	2 cut(s)	585, 1021
BspANI	GGCC	3 cut(s)	214, 722, 1110
BspCNI	CTCAG	6 cut(s)	421, 499, 508, 649, 669, 853
BspPI	GGATC	1 cut(s)	322
BspTNI	GGTCTC	2 cut(s)	350, 914
BsrI	ACTGG	2 cut(s)	690, 1056
BssMI	GATC	2 cut(s)	314, 673
Bst2UI	CCWGG	2 cut(s)	600, 1002
Bst4CI	ACNGT	1 cut(s)	175
BstC8I	GCNNGC	3 cut(s)	40, 670, 792
BstDEI	CTNAG	7 cut(s)	429, 486, 516, 657, 677, 700, 861
BstF5I	GGATG	3 cut(s)	196, 526, 961
BstH2I	RGCGCY	1 cut(s)	912
BstHHI	GCGC	1 cut(s)	911
BstKTI	GATC	2 cut(s)	317, 676
BstMAI	GTCTC	3 cut(s)	350, 529, 914
BstMBI	GATC	2 cut(s)	314, 673
BstNI	CCWGG	2 cut(s)	600, 1002
BstPAI	GACNNNNGTC	1 cut(s)	362
BstSCI	CCNGG	4 cut(s)	260, 598, 722, 1000
BstSFI	CTRYAG	1 cut(s)	915
BstV1I	GCAGC	8 cut(s)	29, 721, 782, 898, 964, 1000, 1067, 1076
BstV2I	GAAGAC	1 cut(s)	485
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
BsuRI	GGCC	3 cut(s)	214, 722, 1110
BtsCI	GGATG	3 cut(s)	196, 526, 961
BtsIMutI	CAGTG	2 cut(s)	762, 1049
Cac8I	GCNNGC	3 cut(s)	40, 670, 792
CaiI	CAGNNNCTG	1 cut(s)	656
CfoI	GCGC	1 cut(s)	911
Cfr13I	GGNCC	3 cut(s)	721, 934, 1108
CseI	GACGC	1 cut(s)	352
DdeI	CTNAG	7 cut(s)	429, 486, 516, 657, 677, 700, 861
DpnI	GATC	2 cut(s)	316, 675
DpnII	GATC	2 cut(s)	314, 673
Eco147I	AGGCCT	1 cut(s)	214
Eco24I	GRGCYC	2 cut(s)	117, 499
Eco31I	GGTCTC	2 cut(s)	350, 914
Eco47I	GGWCC	1 cut(s)	934
EcoRII	CCWGG	2 cut(s)	598, 1000
EcoT38I	GRGCYC	2 cut(s)	117, 499
FaiI	YATR	8 cut(s)	402, 461, 509, 572, 843, 899, 939, 983
FaqI	GGGAC	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	682
FokI	GGATG	3 cut(s)	203, 533, 968
FriOI	GRGCYC	2 cut(s)	117, 499
FspBI	CTAG	3 cut(s)	110, 197, 210
GlaI	GCGC	1 cut(s)	910
HaeII	RGCGCY	1 cut(s)	912
HaeIII	GGCC	3 cut(s)	214, 722, 1110
HapII	CCGG	2 cut(s)	261, 724
HgaI	GACGC	1 cut(s)	352
HhaI	GCGC	1 cut(s)	911
Hin6I	GCGC	1 cut(s)	909
HinP1I	GCGC	1 cut(s)	909
HinfI	GANTC	6 cut(s)	53, 338, 544, 679, 746, 833
HpaII	CCGG	2 cut(s)	261, 724
HphI	GGTGA	4 cut(s)	74, 620, 742, 1016
Hpy166II	GTNNAC	3 cut(s)	556, 611, 683
Hpy188I	TCNGA	3 cut(s)	319, 678, 826
Hpy188III	TCNNGA	4 cut(s)	118, 154, 227, 1042
Hpy8I	GTNNAC	3 cut(s)	556, 611, 683
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	5 cut(s)	151, 371, 721, 983, 1039
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	8 cut(s)	17, 80, 92, 137, 178, 770, 790, 803
HpyF3I	CTNAG	7 cut(s)	429, 486, 516, 657, 677, 700, 861
HspAI	GCGC	1 cut(s)	909
Kzo9I	GATC	2 cut(s)	314, 673
LmnI	GCTCC	3 cut(s)	601, 653, 1028
Lsp1109I	GCAGC	8 cut(s)	29, 721, 782, 898, 964, 1000, 1067, 1076
LweI	GCATC	5 cut(s)	89, 257, 757, 782, 946
MaeI	CTAG	3 cut(s)	110, 197, 210
MaeIII	GTNAC	4 cut(s)	62, 124, 418, 730
MalI	GATC	2 cut(s)	316, 675
MboI	GATC	2 cut(s)	314, 673
MboII	GAAGA	4 cut(s)	339, 383, 386, 490
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	2 cut(s)	117, 499
MluCI	AATT	9 cut(s)	84, 276, 413, 462, 510, 798, 854, 875, 1089
MlyI	GAGTC	5 cut(s)	47, 347, 538, 688, 740
MmeI	TCCRAC	2 cut(s)	292, 849
MseI	TTAA	2 cut(s)	219, 237
MspI	CCGG	2 cut(s)	261, 724
MspR9I	CCNGG	4 cut(s)	262, 600, 724, 1002
Mva1269I	GAATGC	2 cut(s)	13, 970
MvaI	CCWGG	2 cut(s)	600, 1002
NciI	CCSGG	2 cut(s)	262, 724
NdeII	GATC	2 cut(s)	314, 673
NmuCI	GTSAC	3 cut(s)	62, 124, 730
PceI	AGGCCT	1 cut(s)	214
PctI	GAATGC	2 cut(s)	13, 970
PfeI	GAWTC	1 cut(s)	833
PflFI	GACNNNGTC	1 cut(s)	1037
PleI	GAGTC	5 cut(s)	47, 346, 538, 687, 740
PpsI	GAGTC	5 cut(s)	47, 346, 538, 687, 740
PshAI	GACNNNNGTC	1 cut(s)	362
PsiI	TTATAA	1 cut(s)	899
Psp6I	CCWGG	2 cut(s)	598, 1000
PspGI	CCWGG	2 cut(s)	598, 1000
PspPI	GGNCC	3 cut(s)	721, 934, 1108
PstNI	CAGNNNCTG	1 cut(s)	656
PsuI	RGATCY	1 cut(s)	314
PsyI	GACNNNGTC	1 cut(s)	1037
SaqAI	TTAA	2 cut(s)	219, 237
Sau3AI	GATC	2 cut(s)	314, 673
Sau96I	GGNCC	3 cut(s)	721, 934, 1108
SchI	GAGTC	5 cut(s)	47, 347, 538, 688, 740
ScrFI	CCNGG	4 cut(s)	262, 600, 724, 1002
SduI	GDGCHC	2 cut(s)	117, 499
SfaNI	GCATC	5 cut(s)	89, 257, 757, 782, 946
SfcI	CTRYAG	1 cut(s)	915
SinI	GGWCC	1 cut(s)	934
SmlI	CTYRAG	2 cut(s)	118, 929
SmoI	CTYRAG	2 cut(s)	118, 929
Sse9I	AATT	9 cut(s)	84, 276, 413, 462, 510, 798, 854, 875, 1089
SseBI	AGGCCT	1 cut(s)	214
SsiI	CCGC	2 cut(s)	585, 1021
SspMI	CTAG	3 cut(s)	110, 197, 210
StuI	AGGCCT	1 cut(s)	214
StyD4I	CCNGG	4 cut(s)	260, 598, 722, 1000
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	366
TaqII	GACCGA	1 cut(s)	938
TasI	AATT	9 cut(s)	84, 276, 413, 462, 510, 798, 854, 875, 1089
TauI	GCSGC	2 cut(s)	587, 1024
TfiI	GAWTC	1 cut(s)	833
Tru1I	TTAA	2 cut(s)	219, 237
Tru9I	TTAA	2 cut(s)	219, 237
TscAI	CASTG	2 cut(s)	769, 1056
TseFI	GTSAC	3 cut(s)	62, 124, 730
TseI	GCWGC	8 cut(s)	17, 709, 770, 911, 977, 1013, 1055, 1064
Tsp45I	GTSAC	3 cut(s)	62, 124, 730
TspDTI	ATGAA	2 cut(s)	207, 339
TspGWI	ACGGA	4 cut(s)	81, 628, 845, 935
TspRI	CASTG	2 cut(s)	769, 1056
Tth111I	GACNNNGTC	1 cut(s)	1037
VpaK11BI	GGWCC	1 cut(s)	934
XmiI	GTMKAC	1 cut(s)	682
XspI	CTAG	3 cut(s)	110, 197, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.