MD07G1292100.v1.1
MYB Family

Myb-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
N/A
Physical Location & Seq
Forward (+)
35335455 .. 35336789
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1292100.v1.1.491

Sequence Viewer

Length: 390 bp
ATGGACAACATCTCCCCTCCGGGCTCCTCCCTCATTCCTTCTCCTCCGTTGGACAACATCTCCTCCACTCTTTCTCTGGTTGAAAGATTAGGTGGACAAGAAAGGGCAACTCCGAAGTTGGTTCTTCAATTGATGAATTTTAAGGGTCTGGGAATAACTCATGTCAAGCGCCATCTTCAAATGTATAGGAGCAAGAAGATGGAAAACCCCAATCGAGGTGAACAAATTAACAAATTGCACACAGGCTCATCTACTCTTCCAATAGTTAATACAAAAGTTAAGGTTTACATATTTATAAACTTGAGAGATCTTGCTTTCTTATTATATGACAGATCCAGCATAATAGCTCCAATCAAACGCATAGTGTCTATTTTAATTTTCTCAGTGTGA

Protein Analysis

130

Amino Acids

14.45

Weight (kDa)

10.28

Isoelectric Point (pI)

55.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 296
AclWI GGATC 1 cut(s) 327
AcsI RAATTY 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 3 cut(s) 83, 128, 179
AluBI AGCT 1 cut(s) 347
AluI AGCT 1 cut(s) 347
AlwI GGATC 1 cut(s) 327
ApoI RAATTY 1 cut(s) 136
AspLEI GCGC 1 cut(s) 171
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 230
BanII GRGCYC 1 cut(s) 26
BccI CCATC 2 cut(s) 180, 193
BcnI CCSGG 1 cut(s) 21
BfoI RGCGCY 1 cut(s) 172
BglII AGATCT 1 cut(s) 307
Bme1390I CCNGG 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 322
BpuMI CCSGG 1 cut(s) 21
BsaXI ACNNNNNCTCC 5 cut(s) 26, 44, 47, 74, 77
Bsc4I CCNNNNNNNGG 1 cut(s) 215
BseLI CCNNNNNNNGG 1 cut(s) 215
BseRI GAGGAG 3 cut(s) 16, 33, 52
BsiSI CCGG 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 2 cut(s) 307, 332
BspLI GGNNCC 1 cut(s) 25
BspPI GGATC 1 cut(s) 327
BssMI GATC 2 cut(s) 307, 332
Bst6I CTCTTC 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 382
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 2 cut(s) 310, 335
BstMBI GATC 2 cut(s) 307, 332
BstSCI CCNGG 1 cut(s) 19
BstX2I RGATCY 2 cut(s) 307, 332
BstYI RGATCY 2 cut(s) 307, 332
BtsIMutI CAGTG 1 cut(s) 390
CfoI GCGC 1 cut(s) 171
CviAII CATG 1 cut(s) 161
CviJI RGCY 3 cut(s) 24, 246, 347
CviKI_1 RGCY 3 cut(s) 24, 246, 347
DdeI CTNAG 1 cut(s) 382
DpnI GATC 2 cut(s) 309, 334
DpnII GATC 2 cut(s) 307, 332
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 26
EcoT38I GRGCYC 1 cut(s) 26
FaeI CATG 1 cut(s) 164
FaiI YATR 8 cut(s) 162, 186, 290, 296, 325, 327, 341, 362
FatI CATG 1 cut(s) 160
FriOI GRGCYC 1 cut(s) 26
GlaI GCGC 1 cut(s) 170
HaeII RGCGCY 1 cut(s) 172
HapII CCGG 1 cut(s) 20
HhaI GCGC 1 cut(s) 171
Hin1II CATG 1 cut(s) 164
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 3 cut(s) 95, 221, 286
Hpy188I TCNGA 1 cut(s) 114
Hpy8I GTNNAC 3 cut(s) 95, 221, 286
HpyAV CCTTC 1 cut(s) 48
HpyCH4V TGCA 1 cut(s) 238
HpyF3I CTNAG 1 cut(s) 382
Hsp92II CATG 1 cut(s) 164
HspAI GCGC 1 cut(s) 169
Kzo9I GATC 2 cut(s) 307, 332
LmnI GCTCC 3 cut(s) 29, 189, 352
LpnPI CCDG 5 cut(s) 33, 62, 134, 228, 349
MalI GATC 2 cut(s) 309, 334
MboI GATC 2 cut(s) 307, 332
MboII GAAGA 4 cut(s) 116, 167, 208, 248
MfeI CAATTG 1 cut(s) 128
MflI RGATCY 2 cut(s) 307, 332
MhlI GDGCHC 1 cut(s) 26
MluCI AATT 5 cut(s) 128, 136, 225, 233, 375
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 6 cut(s) 27, 37, 41, 54, 73, 209
MseI TTAA 5 cut(s) 141, 228, 267, 279, 374
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 21
MunI CAATTG 1 cut(s) 128
NciI CCSGG 1 cut(s) 21
NdeII GATC 2 cut(s) 307, 332
NlaIII CATG 1 cut(s) 164
NlaIV GGNNCC 1 cut(s) 25
PsiI TTATAA 1 cut(s) 296
PspN4I GGNNCC 1 cut(s) 25
PsuI RGATCY 2 cut(s) 307, 332
SaqAI TTAA 5 cut(s) 141, 228, 267, 279, 374
Sau3AI GATC 2 cut(s) 307, 332
ScrFI CCNGG 1 cut(s) 21
SduI GDGCHC 1 cut(s) 26
SetI ASST 4 cut(s) 94, 220, 285, 349
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
Sse9I AATT 5 cut(s) 128, 136, 225, 233, 375
StyD4I CCNGG 1 cut(s) 19
TaqI TCGA 1 cut(s) 214
TasI AATT 5 cut(s) 128, 136, 225, 233, 375
Tru1I TTAA 5 cut(s) 141, 228, 267, 279, 374
Tru9I TTAA 5 cut(s) 141, 228, 267, 279, 374
TscAI CASTG 1 cut(s) 390
TspDTI ATGAA 1 cut(s) 149
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 1 cut(s) 390
XapI RAATTY 1 cut(s) 136
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.