MD09G1057100.v1.1
WRKY Family

Domain of unknown function (DUF3598)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
N/A
Physical Location & Seq
Reverse (-)
3767164 .. 3768745
1582 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1057100.v1.1.491

Sequence Viewer

Length: 516 bp
ATGATATCTTGCTTTGCAGATTATATATTAAGCACTGCGTTTTGTGAATTAGAAGATGAGGTGGAGGGGGCAGAATACAGAATTAAAGAAACCAACATGTTTACTGTATACAAGTATCAACAGATTGGGTTCTTCCCCAATGAGAAAGCGTTGTCCCTAAGGTACCAGATGGCTGGGATGTTAGAAACTATGCTAAGACAAGGGGTTCTTGGGGAAGATGACACCGTTGAAGAATCACCAAAAGCTTTCCACATCATGGACCCAAAAGGCATTATCGAAATGATTGTCATCTTCCTGGAGGAAAGAGGAGATGGGGCAGTTCTTCCTCCTGCGCTCAACAATAACTTGGAAAACAGAGACAGGATTTTGCCATTTCGTACGTGGAAAGATCACTCTGTAGCAAAACAAGGTGGCGCTTATGAATGGAGTGCGCTATCCACACATCCCTTTTCACCTCTTGTTAATTTATGTCCTTTGATATTATTCAATTCATCCAATCCGACAGCCGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3598 WRKY

Protein Analysis

172

Amino Acids

19.4

Weight (kDa)

4.66

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 162
AccB1I GGYRCC 1 cut(s) 162
AccB7I CCANNNNNTGG 1 cut(s) 256
AccI GTMKAC 1 cut(s) 108
AfaI GTAC 2 cut(s) 164, 379
AfiI CCNNNNNNNGG 1 cut(s) 256
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 2 cut(s) 230, 487
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 351
ArsI GACNNNNNNTTYG 2 cut(s) 270, 302
Asp718I GGTACC 1 cut(s) 162
AspLEI GCGC 3 cut(s) 334, 416, 433
AspS9I GGNCC 1 cut(s) 259
AsuHPI GGTGA 2 cut(s) 228, 444
AvaII GGWCC 1 cut(s) 259
AxyI CCTNAGG 1 cut(s) 158
BanI GGYRCC 1 cut(s) 162
BccI CCATC 2 cut(s) 163, 305
BciT130I CCWGG 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 351
BfmI CTRYAG 1 cut(s) 396
BfoI RGCGCY 1 cut(s) 417
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 2 cut(s) 164, 261
BmrFI CCNGG 1 cut(s) 296
BpmI CTGGAG 1 cut(s) 317
BsaAI YACGTR 1 cut(s) 381
BsaBI GATNNNNATC 1 cut(s) 287
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse21I CCTNAGG 1 cut(s) 158
Bse8I GATNNNNATC 1 cut(s) 287
BseBI CCWGG 1 cut(s) 296
BseGI GGATG 3 cut(s) 183, 442, 491
BseJI GATNNNNATC 1 cut(s) 287
BseLI CCNNNNNNNGG 1 cut(s) 256
BseRI GAGGAG 1 cut(s) 321
BseYI CCCAGC 1 cut(s) 173
BshNI GGYRCC 1 cut(s) 162
BsiWI CGTACG 1 cut(s) 377
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 1 cut(s) 351
BsmFI GGGAC 1 cut(s) 139
Bsp143I GATC 1 cut(s) 388
BspLI GGNNCC 2 cut(s) 164, 261
BspT107I GGYRCC 1 cut(s) 162
BssMI GATC 1 cut(s) 388
BssNAI GTATAC 1 cut(s) 109
Bst1107I GTATAC 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 2 cut(s) 106, 226
BstBAI YACGTR 1 cut(s) 381
BstDEI CTNAG 2 cut(s) 158, 194
BstF5I GGATG 3 cut(s) 183, 442, 491
BstH2I RGCGCY 1 cut(s) 417
BstHHI GCGC 3 cut(s) 334, 416, 433
BstKTI GATC 1 cut(s) 391
BstMAI GTCTC 1 cut(s) 351
BstMBI GATC 1 cut(s) 388
BstNI CCWGG 1 cut(s) 296
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 294
BstSFI CTRYAG 1 cut(s) 396
BstXI CCANNNNNNTGG 1 cut(s) 173
BstZ17I GTATAC 1 cut(s) 109
Bsu36I CCTNAGG 1 cut(s) 158
BtsCI GGATG 3 cut(s) 183, 442, 491
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 33
CfoI GCGC 3 cut(s) 334, 416, 433
Cfr13I GGNCC 1 cut(s) 259
Csp6I GTAC 2 cut(s) 163, 378
CviAII CATG 2 cut(s) 97, 256
CviJI RGCY 3 cut(s) 173, 245, 506
CviKI_1 RGCY 3 cut(s) 173, 245, 506
CviQI GTAC 2 cut(s) 163, 378
DdeI CTNAG 2 cut(s) 158, 194
DpnI GATC 1 cut(s) 390
DpnII GATC 1 cut(s) 388
Eco32I GATATC 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 259
Eco81I CCTNAGG 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 294
EcoRV GATATC 1 cut(s) 6
FaeI CATG 2 cut(s) 100, 259
FaiI YATR 8 cut(s) 24, 26, 98, 109, 191, 257, 420, 469
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FaqI GGGAC 1 cut(s) 139
FatI CATG 2 cut(s) 96, 255
FblI GTMKAC 1 cut(s) 108
FokI GGATG 3 cut(s) 190, 429, 478
GlaI GCGC 3 cut(s) 333, 415, 432
GsaI CCCAGC 1 cut(s) 177
GsuI CTGGAG 1 cut(s) 317
HaeII RGCGCY 1 cut(s) 417
HhaI GCGC 3 cut(s) 334, 416, 433
Hin1II CATG 2 cut(s) 100, 259
Hin6I GCGC 3 cut(s) 332, 414, 431
HinP1I GCGC 3 cut(s) 332, 414, 431
HindIII AAGCTT 1 cut(s) 243
HinfI GANTC 1 cut(s) 233
HphI GGTGA 2 cut(s) 228, 444
Hpy166II GTNNAC 2 cut(s) 102, 109
Hpy188I TCNGA 1 cut(s) 501
Hpy8I GTNNAC 2 cut(s) 102, 109
HpyCH4III ACNGT 2 cut(s) 106, 226
HpyCH4IV ACGT 1 cut(s) 380
HpyCH4V TGCA 1 cut(s) 17
HpyF3I CTNAG 2 cut(s) 158, 194
HpySE526I ACGT 1 cut(s) 380
Hsp92II CATG 2 cut(s) 100, 259
HspAI GCGC 3 cut(s) 332, 414, 431
KpnI GGTACC 1 cut(s) 166
Kzo9I GATC 1 cut(s) 388
LpnPI CCDG 6 cut(s) 159, 179, 281, 308, 342, 346
MaeII ACGT 1 cut(s) 380
MalI GATC 1 cut(s) 390
MboI GATC 1 cut(s) 388
MboII GAAGA 6 cut(s) 65, 124, 227, 242, 283, 314
MluCI AATT 5 cut(s) 47, 81, 463, 487, 511
MnlI CCTC 6 cut(s) 52, 58, 292, 299, 336, 465
MseI TTAA 4 cut(s) 29, 84, 462, 514
MspR9I CCNGG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 296
NdeII GATC 1 cut(s) 388
NlaIII CATG 2 cut(s) 100, 259
NlaIV GGNNCC 2 cut(s) 164, 261
NspI RCATGY 1 cut(s) 100
PciI ACATGT 1 cut(s) 96
PfeI GAWTC 1 cut(s) 233
Pfl23II CGTACG 1 cut(s) 377
PflMI CCANNNNNTGG 1 cut(s) 256
PfoI TCCNGGA 1 cut(s) 294
Ppu21I YACGTR 1 cut(s) 381
PscI ACATGT 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 294
PspFI CCCAGC 1 cut(s) 173
PspGI CCWGG 1 cut(s) 294
PspLI CGTACG 1 cut(s) 377
PspN4I GGNNCC 2 cut(s) 164, 261
PspPI GGNCC 1 cut(s) 259
RsaI GTAC 2 cut(s) 164, 379
RsaNI GTAC 2 cut(s) 163, 378
SaqAI TTAA 4 cut(s) 29, 84, 462, 514
Sau3AI GATC 1 cut(s) 388
Sau96I GGNCC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 296
SetI ASST 6 cut(s) 63, 164, 247, 383, 412, 457
SfcI CTRYAG 1 cut(s) 396
SinI GGWCC 1 cut(s) 259
Sse9I AATT 5 cut(s) 47, 81, 463, 487, 511
StyD4I CCNGG 1 cut(s) 294
TaaI ACNGT 2 cut(s) 106, 226
TaiI ACGT 1 cut(s) 383
TaqI TCGA 1 cut(s) 276
TasI AATT 5 cut(s) 47, 81, 463, 487, 511
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 4 cut(s) 29, 84, 462, 514
Tru9I TTAA 4 cut(s) 29, 84, 462, 514
TscAI CASTG 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 435, 480
TspRI CASTG 1 cut(s) 40
Van91I CCANNNNNTGG 1 cut(s) 256
VpaK11BI GGWCC 1 cut(s) 259
XceI RCATGY 1 cut(s) 100
XcmI CCANNNNNNNNNTGG 1 cut(s) 378
XmiI GTMKAC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.