Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

15057933 .. 15058421

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1096000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGACGCTCGACTTCACGAGGCCTAATGCCTTCACCTCGAACTCGAAGAGCGCGGAGATTGAATTCGCAAAGGATAACTTCAGCGTCTCATTAGGCTCGTCGTTCATGTCGTCGACGATCACTGGAGATGGTAACGTTTCGAACGGGAAGCTAGGATTGTCGTTCTTCTTGGCTCCCGCTCCGACCGTGTCCGGTGCGAAGCCTCCTCTCTCAATGGCGCCATTTAAGAAGAGGTGTCATGAGCACGACCACTTCGACGACACGTCATGCAAGTTTTCCACCTCAGGATCTGATTCCGGTTCCGACAAGTGCCATTGCTCCAAAAGAAGGAAAAATCAGGTGAAGAAAATGATTCACGTGCCGGCGATTAGTTTAAAAATCGTCGATATTCCACCGGACGAGTATTCCTGGAGAAAGTACGGTCAGAAGCCTGATAAGCTCATATTTATATATATTTTACATAAAATTCACTTGTCTTTTCTTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

163

Amino Acids

17.96

Weight (kDa)

9.3

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	76 - 129	3.1e-16	Plant zinc cluster domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	217
AccBSI	CCGCTC	1 cut(s)	179
AccI	GTMKAC	1 cut(s)	113
AccII	CGCG	1 cut(s)	53
AciI	CCGC	2 cut(s)	53, 177
AclI	AACGTT	1 cut(s)	135
AclWI	GGATC	1 cut(s)	295
AcsI	RAATTY	2 cut(s)	62, 465
AcuI	CTGAAG	1 cut(s)	64
AcvI	CACGTG	1 cut(s)	358
AcyI	GRCGYC	1 cut(s)	218
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	327
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	1 cut(s)	62
AhdI	GACNNNNNGTC	1 cut(s)	262
AjiI	CACGTC	1 cut(s)	264
AjnI	CCWGG	1 cut(s)	407
AluBI	AGCT	2 cut(s)	151, 439
AluI	AGCT	2 cut(s)	151, 439
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	1 cut(s)	295
AlwNI	CAGNNNCTG	1 cut(s)	290
AoxI	GGCC	1 cut(s)	20
ApoI	RAATTY	2 cut(s)	62, 465
AspLEI	GCGC	2 cut(s)	53, 220
AsuHPI	GGTGA	2 cut(s)	25, 352
AsuII	TTCGAA	1 cut(s)	140
AxyI	CCTNAGG	1 cut(s)	283
BanI	GGYRCC	1 cut(s)	217
BauI	CACGAG	1 cut(s)	16
BbrPI	CACGTG	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	246
BccI	CCATC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	1 cut(s)	152
BfoI	RGCGCY	1 cut(s)	221
Bme1390I	CCNGG	1 cut(s)	409
BmeRI	GACNNNNNGTC	1 cut(s)	262
BmgBI	CACGTC	1 cut(s)	264
BmiI	GGNNCC	3 cut(s)	174, 219, 301
BmrFI	CCNGG	1 cut(s)	409
BpmI	CTGGAG	2 cut(s)	144, 430
Bpu14I	TTCGAA	1 cut(s)	140
BsaAI	YACGTR	1 cut(s)	358
BsaHI	GRCGYC	1 cut(s)	218
BsaWI	WCCGGW	3 cut(s)	191, 296, 394
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
Bse118I	RCCGGY	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	127
Bse21I	CCTNAGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	409
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	53
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	22
BshNI	GGYRCC	1 cut(s)	217
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	4 cut(s)	192, 297, 362, 395
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmAI	GTCTC	1 cut(s)	91
BsmBI	CGTCTC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	22
Bsp119I	TTCGAA	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	2 cut(s)	117, 287
BspACI	CCGC	2 cut(s)	53, 177
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	1 cut(s)	296
BspFNI	CGCG	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	3 cut(s)	174, 219, 301
BspPI	GGATC	1 cut(s)	295
BspQI	GCTCTTC	1 cut(s)	41
BspT104I	TTCGAA	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	217
BsrBI	CCGCTC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	361
BssMI	GATC	2 cut(s)	117, 287
BssNI	GRCGYC	1 cut(s)	218
BssSI	CACGAG	1 cut(s)	16
Bst2BI	CACGAG	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	409
Bst4CI	ACNGT	2 cut(s)	187, 422
Bst6I	CTCTTC	2 cut(s)	41, 224
BstACI	GRCGYC	1 cut(s)	218
BstBAI	YACGTR	1 cut(s)	358
BstBI	TTCGAA	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	2 cut(s)	283, 482
BstFNI	CGCG	1 cut(s)	53
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	2 cut(s)	53, 220
BstKTI	GATC	2 cut(s)	120, 290
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	2 cut(s)	117, 287
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	1 cut(s)	436
BstNI	CCWGG	1 cut(s)	409
BstSCI	CCNGG	1 cut(s)	407
BstUI	CGCG	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
Bsu36I	CCTNAGG	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	22
BtrI	CACGTC	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	363
CaiI	CAGNNNCTG	1 cut(s)	290
CciI	TCATGA	1 cut(s)	238
CfoI	GCGC	2 cut(s)	53, 220
Cfr10I	RCCGGY	1 cut(s)	361
CseI	GACGC	2 cut(s)	13, 73
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	3 cut(s)	106, 239, 267
CviJI	RGCY	7 cut(s)	22, 96, 151, 173, 202, 430, 439
CviKI_1	RGCY	7 cut(s)	22, 96, 151, 173, 202, 430, 439
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	2 cut(s)	283, 482
DinI	GGCGCC	1 cut(s)	219
DpnI	GATC	2 cut(s)	119, 289
DpnII	GATC	2 cut(s)	117, 287
DraI	TTTAAA	1 cut(s)	375
DriI	GACNNNNNGTC	1 cut(s)	262
Eam1104I	CTCTTC	2 cut(s)	41, 224
Eam1105I	GACNNNNNGTC	1 cut(s)	262
EarI	CTCTTC	2 cut(s)	41, 224
Eco147I	AGGCCT	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	64
Eco72I	CACGTG	1 cut(s)	358
Eco81I	CCTNAGG	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	407
EgeI	GGCGCC	1 cut(s)	219
EheI	GGCGCC	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	3 cut(s)	109, 242, 270
FaiI	YATR	8 cut(s)	107, 240, 268, 443, 449, 451, 453, 462
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FatI	CATG	3 cut(s)	105, 238, 266
FauI	CCCGC	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	113
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	2 cut(s)	52, 219
GsuI	CTGGAG	2 cut(s)	144, 430
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	4 cut(s)	192, 297, 362, 395
HgaI	GACGC	2 cut(s)	13, 73
HhaI	GCGC	2 cut(s)	53, 220
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	3 cut(s)	109, 242, 270
Hin6I	GCGC	2 cut(s)	51, 218
HinP1I	GCGC	2 cut(s)	51, 218
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	2 cut(s)	293, 352
HpaII	CCGG	4 cut(s)	192, 297, 362, 395
HphI	GGTGA	2 cut(s)	25, 352
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	4 cut(s)	183, 292, 304, 426
Hpy188III	TCNNGA	3 cut(s)	16, 239, 285
Hpy8I	GTNNAC	1 cut(s)	114
Hpy99I	CGWCG	5 cut(s)	103, 115, 118, 260, 386
HpyAV	CCTTC	2 cut(s)	40, 321
HpyCH4III	ACNGT	2 cut(s)	187, 422
HpyCH4IV	ACGT	3 cut(s)	135, 263, 357
HpyCH4V	TGCA	1 cut(s)	270
HpyF10VI	GCNNNNNNNGC	1 cut(s)	436
HpyF3I	CTNAG	2 cut(s)	283, 482
HpySE526I	ACGT	3 cut(s)	135, 263, 357
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	3 cut(s)	109, 242, 270
HspAI	GCGC	2 cut(s)	51, 218
KasI	GGCGCC	1 cut(s)	217
KroI	GCCGGC	1 cut(s)	361
KroNI	GCCGGC	1 cut(s)	363
Kzo9I	GATC	2 cut(s)	117, 287
LguI	GCTCTTC	1 cut(s)	41
LmnI	GCTCC	3 cut(s)	178, 184, 323
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	3 cut(s)	135, 263, 357
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	2 cut(s)	119, 289
MbiI	CCGCTC	1 cut(s)	179
MboI	GATC	2 cut(s)	117, 287
MboII	GAAGA	4 cut(s)	58, 157, 241, 355
MflI	RGATCY	1 cut(s)	287
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	2 cut(s)	62, 465
Mly113I	GGCGCC	1 cut(s)	218
MmeI	TCCRAC	2 cut(s)	206, 327
MnlI	CCTC	6 cut(s)	12, 46, 213, 216, 225, 292
MroNI	GCCGGC	1 cut(s)	361
MseI	TTAA	2 cut(s)	225, 374
MspI	CCGG	4 cut(s)	192, 297, 362, 395
MspR9I	CCNGG	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	409
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	436
NaeI	GCCGGC	1 cut(s)	363
NarI	GGCGCC	1 cut(s)	218
NdeII	GATC	2 cut(s)	117, 287
NgoMIV	GCCGGC	1 cut(s)	361
NlaIII	CATG	3 cut(s)	109, 242, 270
NlaIV	GGNNCC	3 cut(s)	174, 219, 301
NspV	TTCGAA	1 cut(s)	140
PagI	TCATGA	1 cut(s)	238
PceI	AGGCCT	1 cut(s)	22
PciSI	GCTCTTC	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	2 cut(s)	107, 252
PdiI	GCCGGC	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	293, 352
PflFI	GACNNNGTC	1 cut(s)	187
PfoI	TCCNGGA	1 cut(s)	407
PluTI	GGCGCC	1 cut(s)	221
PmaCI	CACGTG	1 cut(s)	358
PmlI	CACGTG	1 cut(s)	358
Ppu21I	YACGTR	1 cut(s)	358
Psp1406I	AACGTT	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	407
PspCI	CACGTG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	407
PspN4I	GGNNCC	3 cut(s)	174, 219, 301
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	287
PsyI	GACNNNGTC	1 cut(s)	187
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SalI	GTCGAC	1 cut(s)	112
SapI	GCTCTTC	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	225, 374
Sau3AI	GATC	2 cut(s)	117, 287
ScrFI	CCNGG	1 cut(s)	409
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	9 cut(s)	38, 138, 153, 236, 266, 284, 342, 360, 441
SfoI	GGCGCC	1 cut(s)	219
SfuI	TTCGAA	1 cut(s)	140
SgrDI	CGTCGACG	1 cut(s)	112
Sse9I	AATT	2 cut(s)	62, 465
SseBI	AGGCCT	1 cut(s)	22
SsiI	CCGC	2 cut(s)	53, 177
SspDI	GGCGCC	1 cut(s)	217
SspMI	CTAG	1 cut(s)	152
StuI	AGGCCT	1 cut(s)	22
StyD4I	CCNGG	1 cut(s)	407
TaaI	ACNGT	2 cut(s)	187, 422
TaiI	ACGT	3 cut(s)	138, 266, 360
TaqI	TCGA	7 cut(s)	9, 38, 44, 113, 140, 255, 384
TasI	AATT	2 cut(s)	62, 465
TfiI	GAWTC	2 cut(s)	293, 352
Tru1I	TTAA	2 cut(s)	225, 374
Tru9I	TTAA	2 cut(s)	225, 374
TscAI	CASTG	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	127
Tth111I	GACNNNGTC	1 cut(s)	187
XapI	RAATTY	2 cut(s)	62, 465
XmiI	GTMKAC	1 cut(s)	113
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.