Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

20595865 .. 20597487

Gene Structure 1623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1125800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTTAGATTGCAGTGATCAGATTGACAAGGAGGAGGATGTGAAATATCAGAGGAGGAGGACAAGGAAATGGCCTCGATCCAAAAACCTTATTGCTGATAGAAAAAGAAGGAAAAAGTTTTGTGACAGACTTTATGCTCTTAGGTCTTTGGTTCCCATTATTTCCAAATTGGACAGGGCGTCCATTCTTGGGGATGCCATTGAATATGTGATACAGCCGCAGAAGCAAGCTAAACAGCTTCAGGATAAGCTTGACGATCATGCAGAGGATGATGGTGCTAACAACAATGTCAAATCAGAGATTCAGAGCCAAAGTGGAGTTGAGCACATTAGGCCTAAAACTGATGATCATCAAGATGATCATAAAGCTTCAAATGGATTTCATTTTGGAACACCGGGAGACTGCAGCTTCTCGAAACAAAGCCAAGATTATTCATATGTTGTCCATGATCACAAGACAGAACAGATGGAGAAAAAGGATAGCGAGATGGTTGAAGTTGATGATGTGAGGGACTCGTTGCTAGAGCTAAAAAGGAACCCATCAATACGGCGTGGTGAGACGGCTAAAGCGGCAGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

194

Amino Acids

22.38

Weight (kDa)

6.66

Isoelectric Point (pI)

65.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	27 - 70	1.9e-06	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	218, 569
AclWI	GGATC	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgsI	TTSAA	3 cut(s)	203, 372, 494
AhdI	GACNNNNNGTC	1 cut(s)	178
AluBI	AGCT	6 cut(s)	230, 238, 250, 368, 408, 526
AluI	AGCT	6 cut(s)	230, 238, 250, 368, 408, 526
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	2 cut(s)	393, 551
AlwI	GGATC	1 cut(s)	72
AoxI	GGCC	2 cut(s)	71, 332
ApeKI	GCWGC	1 cut(s)	405
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	1 cut(s)	566
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	417
BccI	CCATC	4 cut(s)	266, 460, 481, 547
BceAI	ACGGC	2 cut(s)	563, 576
BclI	TGATCA	4 cut(s)	16, 346, 358, 448
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	2 cut(s)	393, 551
BfaI	CTAG	1 cut(s)	521
BfmI	CTRYAG	1 cut(s)	403
BisI	GCNGC	3 cut(s)	218, 406, 570
BlsI	GCNGC	3 cut(s)	219, 407, 571
Bme1390I	CCNGG	1 cut(s)	396
BmeRI	GACNNNNNGTC	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	153, 536
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	184
BpuMI	CCSGG	1 cut(s)	396
BsaBI	GATNNNNATC	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse8I	GATNNNNATC	1 cut(s)	348
BseGI	GGATG	3 cut(s)	43, 199, 274
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseRI	GAGGAG	3 cut(s)	47, 67, 70
BseXI	GCAGC	1 cut(s)	417
BshFI	GGCC	2 cut(s)	73, 334
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	2 cut(s)	393, 551
BsmBI	CGTCTC	1 cut(s)	551
BsmFI	GGGAC	1 cut(s)	524
BsnI	GGCC	2 cut(s)	73, 334
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	6 cut(s)	16, 77, 256, 346, 358, 448
BspACI	CCGC	2 cut(s)	218, 569
BspANI	GGCC	2 cut(s)	73, 334
BspLI	GGNNCC	2 cut(s)	153, 536
BspMAI	CTGCAG	1 cut(s)	407
BspPI	GGATC	1 cut(s)	72
BssMI	GATC	6 cut(s)	16, 77, 256, 346, 358, 448
BssNI	GRCGYC	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	140
BstF5I	GGATG	3 cut(s)	43, 199, 274
BstKTI	GATC	6 cut(s)	19, 80, 259, 349, 361, 451
BstMAI	GTCTC	2 cut(s)	393, 551
BstMBI	GATC	6 cut(s)	16, 77, 256, 346, 358, 448
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 331, 569
BstSCI	CCNGG	1 cut(s)	394
BstSFI	CTRYAG	1 cut(s)	403
BstV1I	GCAGC	1 cut(s)	417
BsuRI	GGCC	2 cut(s)	73, 334
BtsCI	GGATG	3 cut(s)	43, 199, 274
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	228
CseI	GACGC	1 cut(s)	168
CviAII	CATG	2 cut(s)	260, 446
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	6 cut(s)	18, 79, 258, 348, 360, 450
DpnII	GATC	6 cut(s)	16, 77, 256, 346, 358, 448
DriI	GACNNNNNGTC	1 cut(s)	178
Eam1105I	GACNNNNNGTC	1 cut(s)	178
Eco147I	AGGCCT	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	224
Esp3I	CGTCTC	1 cut(s)	551
FaeI	CATG	2 cut(s)	263, 449
FaiI	YATR	7 cut(s)	135, 207, 261, 363, 436, 438, 447
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	2 cut(s)	259, 445
FauNDI	CATATG	1 cut(s)	436
FbaI	TGATCA	4 cut(s)	16, 346, 358, 448
Fnu4HI	GCNGC	3 cut(s)	218, 406, 570
FokI	GGATG	3 cut(s)	50, 206, 281
Fsp4HI	GCNGC	3 cut(s)	218, 406, 570
FspBI	CTAG	1 cut(s)	521
GluI	GCNGC	3 cut(s)	218, 406, 570
HaeIII	GGCC	2 cut(s)	73, 334
HapII	CCGG	1 cut(s)	395
HgaI	GACGC	1 cut(s)	168
Hin1I	GRCGYC	1 cut(s)	179
Hin1II	CATG	2 cut(s)	263, 449
HindIII	AAGCTT	2 cut(s)	248, 366
HinfI	GANTC	2 cut(s)	301, 512
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	1 cut(s)	566
Hpy188I	TCNGA	4 cut(s)	21, 51, 298, 306
Hpy188III	TCNNGA	3 cut(s)	242, 353, 412
HpyAV	CCTTC	1 cut(s)	102
HpyCH4V	TGCA	3 cut(s)	12, 263, 405
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 331, 569
HpyF3I	CTNAG	1 cut(s)	140
Hsp92I	GRCGYC	1 cut(s)	179
Hsp92II	CATG	2 cut(s)	263, 449
Ksp22I	TGATCA	4 cut(s)	16, 346, 358, 448
Kzo9I	GATC	6 cut(s)	16, 77, 256, 346, 358, 448
LpnPI	CCDG	3 cut(s)	160, 227, 408
Lsp1109I	GCAGC	1 cut(s)	417
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	521
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	6 cut(s)	18, 79, 258, 348, 360, 450
MboI	GATC	6 cut(s)	16, 77, 256, 346, 358, 448
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	2 cut(s)	167, 577
MlyI	GAGTC	1 cut(s)	506
MnlI	CCTC	8 cut(s)	25, 28, 45, 48, 51, 84, 259, 501
MslI	CAYNNNNRTG	1 cut(s)	354
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	3 cut(s)	223, 331, 569
NciI	CCSGG	1 cut(s)	396
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	6 cut(s)	16, 77, 256, 346, 358, 448
NlaIII	CATG	2 cut(s)	263, 449
NlaIV	GGNNCC	2 cut(s)	153, 536
NmuCI	GTSAC	1 cut(s)	122
PceI	AGGCCT	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	301
PkrI	GCNGC	3 cut(s)	219, 407, 571
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
PspN4I	GGNNCC	2 cut(s)	153, 536
PstI	CTGCAG	1 cut(s)	407
RseI	CAYNNNNRTG	1 cut(s)	354
SatI	GCNGC	3 cut(s)	218, 406, 570
Sau3AI	GATC	6 cut(s)	16, 77, 256, 346, 358, 448
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	1 cut(s)	396
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	8 cut(s)	90, 146, 232, 240, 252, 370, 410, 528
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	354
Sse9I	AATT	2 cut(s)	167, 577
SseBI	AGGCCT	1 cut(s)	334
SsiI	CCGC	2 cut(s)	218, 569
SspMI	CTAG	1 cut(s)	521
StuI	AGGCCT	1 cut(s)	334
StyD4I	CCNGG	1 cut(s)	394
TaqI	TCGA	2 cut(s)	76, 413
TasI	AATT	2 cut(s)	167, 577
TauI	GCSGC	2 cut(s)	220, 572
TfiI	GAWTC	1 cut(s)	301
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	1 cut(s)	405
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	371, 423
TspRI	CASTG	1 cut(s)	19
XspI	CTAG	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.