Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

36170541 .. 36171762

Gene Structure 1222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1249600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCTACCCCTTCGACTATATGGAGGAGCTGCATTTGAAAGGGTTATGCATGGATTCCACTGTGCTGCATATTCAATTGAATGTCCTCCAGTGTCTAGGGAGAAGGTGGCAAATATCCTACTTGCCCATGCTAGCCGAGGTGGGGGTAGAGGAGTGACGGAGGCGGCTGCAGAGATTGCACGCTCATGGCTTGCTCCTCTTCTTGACACTGCATGTGATCGGCTTGCATTTGTTTTGAGAAACCTTTTTGATCTTGCCATAGAACGAACTCGCAACTGTGATTCAGAATGTGGGAGGAAATCTGGAAATATGGATGGGTATAGTGGTTTCCATGCTGCTCTTAGGCAGGCACACAACAGATTTATAAAGGAGCTTGCTAAACAGCGCAAGCAACTAGTTCGGCACCACCTCGATTCAGTTACAAGTCCACACTCATTGGTTTGTTATGGCAATGACTTTCAACGCAGTTTTGGTTCCAGTACCGCTTCTTCTTACAACTTTAACCACCCTTCAGTCACTTCATTATTACTTGAGTTATCTGATGCCACGATGAAGGATCAGAAAAGAACGCACACCAAACAACTCCCGCAAAAGGTGCAGATTCCTGAGACCCCATCACCTGATCAGCCATGTGATGGTGGTTTGAAGAAAGATCTTGGGAATGGCATTGACATAGGAGCAAGAAAGCGGATCTCAAGAATGACTGGAAACGACAGAAATCCTGACAATGCAAGAATACAGCAAAATGGTGGTTCCCTTTTGTTTGGAAATGCTGATGGTACTTTAAAATCAGCCACGGCTTATACTGAAATCTGTTTATCAGCTGCACAGCATTTCGGGCGGATACGTGAAGTTCTTATTGAGAGAAATGTGGCATCAGCTTTATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022402 GO:0032506 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051301 GO:0061640 GO:0071840 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_N

Protein Analysis

297

Amino Acids

32.47

Weight (kDa)

9.25

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	365
AccB1I	GGYRCC	1 cut(s)	402
AccB7I	CCANNNNNTGG	1 cut(s)	635
AciI	CCGC	5 cut(s)	164, 483, 587, 688, 841
AclWI	GGATC	2 cut(s)	564, 698
AcuI	CTGAAG	1 cut(s)	495
AfaI	GTAC	2 cut(s)	481, 781
AfiI	CCNNNNNNNGG	3 cut(s)	142, 592, 635
AgsI	TTSAA	5 cut(s)	38, 75, 80, 461, 646
AhlI	ACTAGT	1 cut(s)	394
AluBI	AGCT	4 cut(s)	29, 373, 824, 881
AluI	AGCT	4 cut(s)	29, 373, 824, 881
Alw26I	GTCTC	1 cut(s)	602
AlwI	GGATC	2 cut(s)	564, 698
ApeKI	GCWGC	5 cut(s)	29, 65, 167, 335, 824
AspLEI	GCGC	1 cut(s)	387
AsuHPI	GGTGA	1 cut(s)	609
AsuNHI	GCTAGC	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	402
BarI	GAAGNNNNNNTAC	2 cut(s)	472, 504
BbvI	GCAGC	5 cut(s)	16, 52, 154, 322, 811
BccI	CCATC	4 cut(s)	308, 622, 629, 770
BceAI	ACGGC	1 cut(s)	813
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciVI	GTATCC	1 cut(s)	837
BclI	TGATCA	1 cut(s)	622
BcoDI	GTCTC	1 cut(s)	602
BcuI	ACTAGT	1 cut(s)	394
BfaI	CTAG	3 cut(s)	96, 132, 395
BfmI	CTRYAG	1 cut(s)	168
BfuI	GTATCC	1 cut(s)	837
BglII	AGATCT	1 cut(s)	652
BisI	GCNGC	6 cut(s)	30, 66, 165, 168, 336, 825
BlsI	GCNGC	6 cut(s)	31, 67, 166, 169, 337, 826
BmiI	GGNNCC	3 cut(s)	404, 475, 754
BmsI	GCATC	2 cut(s)	532, 884
BmtI	GCTAGC	1 cut(s)	135
BpmI	CTGGAG	1 cut(s)	72
BpuEI	CTTGAG	2 cut(s)	551, 679
BsaAI	YACGTR	1 cut(s)	848
BsaI	GGTCTC	1 cut(s)	602
BsaJI	CCNNGG	2 cut(s)	136, 795
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 592, 635
Bse1I	ACTGG	3 cut(s)	89, 477, 709
Bse3DI	GCAATG	1 cut(s)	457
BseDI	CCNNGG	2 cut(s)	136, 795
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	3 cut(s)	142, 592, 635
BseMI	GCAATG	1 cut(s)	457
BseMII	CTCAG	1 cut(s)	597
BseNI	ACTGG	3 cut(s)	89, 477, 709
BseRI	GAGGAG	3 cut(s)	39, 165, 186
BseXI	GCAGC	5 cut(s)	16, 52, 154, 322, 811
BsgI	GTGCAG	2 cut(s)	617, 810
BshNI	GGYRCC	1 cut(s)	402
BslI	CCNNNNNNNGG	3 cut(s)	142, 592, 635
BsmAI	GTCTC	1 cut(s)	602
Bso31I	GGTCTC	1 cut(s)	602
Bsp143I	GATC	6 cut(s)	217, 250, 556, 622, 652, 690
BspACI	CCGC	5 cut(s)	164, 483, 587, 688, 841
BspCNI	CTCAG	1 cut(s)	598
BspLI	GGNNCC	3 cut(s)	404, 475, 754
BspMAI	CTGCAG	1 cut(s)	172
BspOI	GCTAGC	1 cut(s)	135
BspPI	GGATC	2 cut(s)	564, 698
BspT107I	GGYRCC	1 cut(s)	402
BspTNI	GGTCTC	1 cut(s)	602
BsrDI	GCAATG	1 cut(s)	457
BsrI	ACTGG	3 cut(s)	89, 477, 709
BssECI	CCNNGG	2 cut(s)	136, 795
BssMI	GATC	6 cut(s)	217, 250, 556, 622, 652, 690
Bst4CI	ACNGT	2 cut(s)	62, 278
Bst6I	CTCTTC	1 cut(s)	204
BstAPI	GCANNNNNTGC	2 cut(s)	176, 595
BstBAI	YACGTR	1 cut(s)	848
BstC8I	GCNNGC	7 cut(s)	133, 181, 192, 225, 348, 375, 389
BstDEI	CTNAG	2 cut(s)	341, 606
BstDSI	CCRYGG	1 cut(s)	795
BstF5I	GGATG	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	6 cut(s)	220, 253, 559, 625, 655, 693
BstMAI	GTCTC	1 cut(s)	602
BstMBI	GATC	6 cut(s)	217, 250, 556, 622, 652, 690
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 595, 838
BstNSI	RCATGY	1 cut(s)	216
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	5 cut(s)	16, 52, 154, 322, 811
BstX2I	RGATCY	2 cut(s)	652, 690
BstYI	RGATCY	2 cut(s)	652, 690
BsuI	GTATCC	1 cut(s)	837
BtgI	CCRYGG	1 cut(s)	795
BtsCI	GGATG	1 cut(s)	319
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	3 cut(s)	58, 96, 207
Cac8I	GCNNGC	7 cut(s)	133, 181, 192, 225, 348, 375, 389
CfoI	GCGC	1 cut(s)	387
Csp6I	GTAC	2 cut(s)	480, 780
CspCI	CAANNNNNGTGG	2 cut(s)	417, 452
CviAII	CATG	6 cut(s)	50, 128, 186, 213, 332, 630
CviQI	GTAC	2 cut(s)	480, 780
DdeI	CTNAG	2 cut(s)	341, 606
DpnI	GATC	6 cut(s)	219, 252, 558, 624, 654, 692
DpnII	GATC	6 cut(s)	217, 250, 556, 622, 652, 690
DraI	TTTAAA	1 cut(s)	786
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
EciI	GGCGGA	1 cut(s)	856
Eco31I	GGTCTC	1 cut(s)	602
Eco57I	CTGAAG	1 cut(s)	495
EcoT22I	ATGCAT	1 cut(s)	51
FaeI	CATG	6 cut(s)	53, 131, 189, 216, 335, 633
FatI	CATG	6 cut(s)	49, 127, 185, 212, 331, 629
FauI	CCCGC	1 cut(s)	594
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	6 cut(s)	30, 66, 165, 168, 336, 825
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	6 cut(s)	30, 66, 165, 168, 336, 825
FspBI	CTAG	3 cut(s)	96, 132, 395
GlaI	GCGC	1 cut(s)	386
GluI	GCNGC	6 cut(s)	30, 66, 165, 168, 336, 825
GsuI	CTGGAG	1 cut(s)	72
HhaI	GCGC	1 cut(s)	387
Hin1II	CATG	6 cut(s)	53, 131, 189, 216, 335, 633
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HinfI	GANTC	4 cut(s)	54, 281, 413, 601
HphI	GGTGA	1 cut(s)	609
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	3 cut(s)	286, 541, 561
Hpy188III	TCNNGA	5 cut(s)	203, 303, 605, 696, 722
Hpy8I	GTNNAC	1 cut(s)	428
HpyAV	CCTTC	4 cut(s)	20, 97, 519, 547
HpyCH4III	ACNGT	2 cut(s)	62, 278
HpyCH4IV	ACGT	1 cut(s)	847
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 595, 838
HpyF3I	CTNAG	2 cut(s)	341, 606
HpySE526I	ACGT	1 cut(s)	847
Hsp92II	CATG	6 cut(s)	53, 131, 189, 216, 335, 633
HspAI	GCGC	1 cut(s)	385
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	6 cut(s)	217, 250, 556, 622, 652, 690
LmnI	GCTCC	4 cut(s)	26, 199, 370, 677
LpnPI	CCDG	8 cut(s)	102, 288, 332, 490, 618, 633, 690, 735
Lsp1109I	GCAGC	5 cut(s)	16, 52, 154, 322, 811
LweI	GCATC	2 cut(s)	532, 884
MaeI	CTAG	3 cut(s)	96, 132, 395
MaeII	ACGT	1 cut(s)	847
MaeIII	GTNAC	3 cut(s)	154, 418, 514
MalI	GATC	6 cut(s)	219, 252, 558, 624, 654, 692
MboI	GATC	6 cut(s)	217, 250, 556, 622, 652, 690
MboII	GAAGA	3 cut(s)	191, 480, 658
MfeI	CAATTG	1 cut(s)	75
MflI	RGATCY	2 cut(s)	652, 690
MluCI	AATT	1 cut(s)	75
MnlI	CCTC	8 cut(s)	17, 96, 131, 143, 154, 207, 288, 419
Mph1103I	ATGCAT	1 cut(s)	51
MseI	TTAA	2 cut(s)	501, 785
MslI	CAYNNNNRTG	1 cut(s)	184
MspA1I	CMGCKG	1 cut(s)	824
MunI	CAATTG	1 cut(s)	75
MwoI	GCNNNNNNNGC	3 cut(s)	176, 595, 838
NdeII	GATC	6 cut(s)	217, 250, 556, 622, 652, 690
NheI	GCTAGC	1 cut(s)	131
NlaIII	CATG	6 cut(s)	53, 131, 189, 216, 335, 633
NlaIV	GGNNCC	3 cut(s)	404, 475, 754
NmeAIII	GCCGAG	1 cut(s)	161
NmuCI	GTSAC	2 cut(s)	154, 514
NsiI	ATGCAT	1 cut(s)	51
NspI	RCATGY	1 cut(s)	216
PfeI	GAWTC	4 cut(s)	54, 281, 413, 601
PflMI	CCANNNNNTGG	1 cut(s)	635
PkrI	GCNGC	6 cut(s)	31, 67, 166, 169, 337, 826
Ppu21I	YACGTR	1 cut(s)	848
PsiI	TTATAA	1 cut(s)	365
PspN4I	GGNNCC	3 cut(s)	404, 475, 754
PstI	CTGCAG	1 cut(s)	172
PsuI	RGATCY	2 cut(s)	652, 690
PvuII	CAGCTG	1 cut(s)	824
RsaI	GTAC	2 cut(s)	481, 781
RsaNI	GTAC	2 cut(s)	480, 780
RseI	CAYNNNNRTG	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	501, 785
SatI	GCNGC	6 cut(s)	30, 66, 165, 168, 336, 825
Sau3AI	GATC	6 cut(s)	217, 250, 556, 622, 652, 690
SfaNI	GCATC	2 cut(s)	532, 884
SfcI	CTRYAG	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	184
SmlI	CTYRAG	2 cut(s)	530, 694
SmoI	CTYRAG	2 cut(s)	530, 694
SpeI	ACTAGT	1 cut(s)	394
Sse9I	AATT	1 cut(s)	75
SsiI	CCGC	5 cut(s)	164, 483, 587, 688, 841
SspMI	CTAG	3 cut(s)	96, 132, 395
TaaI	ACNGT	2 cut(s)	62, 278
TaiI	ACGT	1 cut(s)	850
TaqI	TCGA	2 cut(s)	13, 411
TasI	AATT	1 cut(s)	75
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	4 cut(s)	54, 281, 413, 601
Tru1I	TTAA	2 cut(s)	501, 785
Tru9I	TTAA	2 cut(s)	501, 785
TscAI	CASTG	3 cut(s)	65, 96, 214
TseFI	GTSAC	2 cut(s)	154, 514
TseI	GCWGC	5 cut(s)	29, 65, 167, 335, 824
Tsp45I	GTSAC	2 cut(s)	154, 514
TspDTI	ATGAA	2 cut(s)	510, 566
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	3 cut(s)	65, 96, 214
Van91I	CCANNNNNTGG	1 cut(s)	635
XceI	RCATGY	1 cut(s)	216
XspI	CTAG	3 cut(s)	96, 132, 395
Zsp2I	ATGCAT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.