MD11G1263600.v1.1

Rab3 gtpase-activating protein non-catalytic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
N/A
Physical Location & Seq
Reverse (-)
37880041 .. 37883569
3529 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1263600.v1.1.491

Sequence Viewer

Length: 978 bp
ATGGTATATCCCGAGCGGATTATAAGGTTGAGAGTCCGTGGAACGAAGAGAGATTTTACCCATGAAACATCCTCAGAGGAGGTTTGTGTTGTTATGCCTGGCATAGTTGCTCGTTTTGATGGCTCGGATATTCAGAATATGCTGCTCCAGTGGTTTGAAGATACACAGTCTCAGTTCTGGGATCAAACACTCAAAAAGCGAGGCTCAGATGATTTTGAACATTCCTATGGTAAATTACCTTACCAGTTATGGAGTGTCAGCAAGTATGGTACTTGTGCTGATGCAGCCATTACTGGCATTATGCCTCCGCCACTGATGGAAATCCAGTCAACTGAACATTATTTATGTGGAATCACTGTTGGAGAGGATGCAGTGATTTCGGCCTTCAGACTATCGGAAGACAATAATAGGTCTTTGGTGGGGGCAATCTTGTCTAAAGTTGTGCCTGCAACATTTTCAACAATAGCTTCATTATCAAAAATGATTTGGGGGAGCGATCAGACTTCATCTAAAAAATCAGAGGAGAAACCTCAACCATTTGCACAAGCTTCTCCATTGACATGTTTGAAGGATTTCCCAAGAAAGGGTGAGAAGCTTACCTTATCACCTAGTGGCACATTGACTGCGATTACAGATTCACTTGGTCGTATATTGCTTTTAGATACTCAAGCACTTGTGATAGTGCGGCTTTGGAAGGGATATCGGGATGCTAGTTGCCTATTCATGGAGATGCTGGTCAAAAAAGATACTGCAGCTTCAAATTCAAGTCACTATGAACCCACGAAGAGTGATTACTGCCTGTGTTTGGTTATTCATGCCCCTCGAAAAGGAATTATTGAGGTAGTTTCTTTTACCGTTTCCTTTAAGGAACTCTCTCCTTTTTCGGACATGCAAGCAATCAAAGATCTTTTTCATTCTCTTAGTTGCATTTTTTGTAGTTTATATATTTACAATAATGAGACTGCAAAATTAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RAB3GAP2_N

Protein Analysis

326

Amino Acids

36.42

Weight (kDa)

6.6

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RAB3GAP2_N PF14655 1 - 283 6e-90 Rab3 GTPase-activating protein regulatory subunit N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 23
AccBSI CCGCTC 1 cut(s) 16
AciI CCGC 3 cut(s) 16, 308, 685
AclWI GGATC 1 cut(s) 189
AcsI RAATTY 1 cut(s) 760
AcuI CTGAAG 1 cut(s) 370
AdeI CACNNNGTG 1 cut(s) 611
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 5 cut(s) 583, 584, 724, 805, 827
AflIII ACRYGT 1 cut(s) 560
AgsI TTSAA 6 cut(s) 158, 218, 459, 568, 759, 765
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 4 cut(s) 467, 548, 595, 755
AluI AGCT 4 cut(s) 467, 548, 595, 755
Alw26I GTCTC 2 cut(s) 174, 953
AlwI GGATC 1 cut(s) 189
Ama87I CYCGRG 1 cut(s) 11
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 3 cut(s) 142, 284, 752
ApoI RAATTY 1 cut(s) 760
Asp700I GAANNNNTTC 1 cut(s) 572
AsuHPI GGTGA 2 cut(s) 597, 599
AvaI CYCGRG 1 cut(s) 11
BarI GAAGNNNNNNTAC 2 cut(s) 776, 808
BbsI GAAGAC 1 cut(s) 405
BbvI GCAGC 3 cut(s) 129, 296, 764
BccI CCATC 2 cut(s) 113, 310
BcgI CGANNNNNNTGC 2 cut(s) 360, 394
BciT130I CCWGG 1 cut(s) 99
BcoDI GTCTC 2 cut(s) 174, 953
BfaI CTAG 2 cut(s) 609, 711
BfmI CTRYAG 1 cut(s) 750
BglII AGATCT 1 cut(s) 904
BisI GCNGC 4 cut(s) 143, 285, 686, 753
BlsI GCNGC 4 cut(s) 144, 286, 687, 754
Bme1390I CCNGG 1 cut(s) 99
BmeT110I CYCGRG 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 99
BmsI GCATC 4 cut(s) 271, 358, 697, 720
BpiI GAAGAC 1 cut(s) 405
BpmI CTGGAG 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 651
BsaBI GATNNNNATC 1 cut(s) 320
BsaJI CCNNGG 1 cut(s) 37
Bsc4I CCNNNNNNNGG 5 cut(s) 583, 584, 724, 805, 827
Bse1I ACTGG 4 cut(s) 148, 244, 298, 325
Bse8I GATNNNNATC 1 cut(s) 320
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 3 cut(s) 68, 373, 712
BseJI GATNNNNATC 1 cut(s) 320
BseLI CCNNNNNNNGG 5 cut(s) 583, 584, 724, 805, 827
BseMII CTCAG 3 cut(s) 87, 185, 219
BseNI ACTGG 4 cut(s) 148, 244, 298, 325
BseRI GAGGAG 2 cut(s) 92, 536
BseXI GCAGC 3 cut(s) 129, 296, 764
BshFI GGCC 1 cut(s) 383
BsiHKCI CYCGRG 1 cut(s) 11
BslI CCNNNNNNNGG 5 cut(s) 583, 584, 724, 805, 827
BsmAI GTCTC 2 cut(s) 174, 953
BsnI GGCC 1 cut(s) 383
BsoBI CYCGRG 1 cut(s) 11
Bsp143I GATC 3 cut(s) 181, 496, 904
BspACI CCGC 3 cut(s) 16, 308, 685
BspANI GGCC 1 cut(s) 383
BspCNI CTCAG 3 cut(s) 86, 184, 218
BspMAI CTGCAG 1 cut(s) 754
BspPI GGATC 1 cut(s) 189
BsrBI CCGCTC 1 cut(s) 16
BsrI ACTGG 4 cut(s) 148, 244, 298, 325
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 3 cut(s) 181, 496, 904
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 3 cut(s) 168, 358, 856
Bst6I CTCTTC 2 cut(s) 41, 779
BstC8I GCNNGC 2 cut(s) 447, 894
BstDEI CTNAG 4 cut(s) 73, 171, 205, 920
BstDSI CCRYGG 1 cut(s) 37
BstENI CCTNNNNNAGG 1 cut(s) 825
BstF5I GGATG 3 cut(s) 68, 373, 712
BstKTI GATC 3 cut(s) 184, 499, 907
BstMAI GTCTC 2 cut(s) 174, 953
BstMBI GATC 3 cut(s) 181, 496, 904
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 2 cut(s) 564, 892
BstSCI CCNGG 1 cut(s) 97
BstSFI CTRYAG 1 cut(s) 750
BstV1I GCAGC 3 cut(s) 129, 296, 764
BstV2I GAAGAC 1 cut(s) 405
BstX2I RGATCY 1 cut(s) 904
BstYI RGATCY 1 cut(s) 904
BsuRI GGCC 1 cut(s) 383
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 3 cut(s) 68, 373, 712
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 4 cut(s) 155, 311, 354, 378
Cac8I GCNNGC 2 cut(s) 447, 894
Csp6I GTAC 1 cut(s) 270
CviAII CATG 5 cut(s) 62, 561, 724, 815, 889
CviJI RGCY 9 cut(s) 123, 204, 287, 383, 467, 548, 595, 688, 755
CviKI_1 RGCY 9 cut(s) 123, 204, 287, 383, 467, 548, 595, 688, 755
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 4 cut(s) 73, 171, 205, 920
DpnI GATC 3 cut(s) 183, 498, 906
DpnII GATC 3 cut(s) 181, 496, 904
DraIII CACNNNGTG 1 cut(s) 611
Eam1104I CTCTTC 2 cut(s) 41, 779
EarI CTCTTC 2 cut(s) 41, 779
EciI GGCGGA 1 cut(s) 297
Eco32I GATATC 1 cut(s) 701
Eco57I CTGAAG 1 cut(s) 370
Eco88I CYCGRG 1 cut(s) 11
EcoNI CCTNNNNNAGG 1 cut(s) 825
EcoRII CCWGG 1 cut(s) 97
EcoRV GATATC 1 cut(s) 701
FaeI CATG 5 cut(s) 65, 564, 727, 818, 892
FalI AAGNNNNNCTT 2 cut(s) 584, 616
FatI CATG 5 cut(s) 61, 560, 723, 814, 888
Fnu4HI GCNGC 4 cut(s) 143, 285, 686, 753
FokI GGATG 3 cut(s) 55, 380, 719
Fsp4HI GCNGC 4 cut(s) 143, 285, 686, 753
FspBI CTAG 2 cut(s) 609, 711
GluI GCNGC 4 cut(s) 143, 285, 686, 753
GsuI CTGGAG 1 cut(s) 131
HaeIII GGCC 1 cut(s) 383
Hin1II CATG 5 cut(s) 65, 564, 727, 818, 892
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HindIII AAGCTT 2 cut(s) 546, 593
HinfI GANTC 3 cut(s) 33, 351, 635
HphI GGTGA 2 cut(s) 597, 599
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 9 cut(s) 76, 127, 135, 208, 389, 397, 501, 520, 886
Hpy188III TCNNGA 2 cut(s) 11, 704
Hpy8I GTNNAC 1 cut(s) 330
HpyAV CCTTC 3 cut(s) 394, 562, 688
HpyCH4III ACNGT 3 cut(s) 168, 358, 856
HpyCH4V TGCA 8 cut(s) 284, 371, 449, 542, 752, 892, 927, 965
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 4 cut(s) 73, 171, 205, 920
Hsp92II CATG 5 cut(s) 65, 564, 727, 818, 892
Kzo9I GATC 3 cut(s) 181, 496, 904
LmnI GCTCC 2 cut(s) 150, 492
Lsp1109I GCAGC 3 cut(s) 129, 296, 764
LweI GCATC 4 cut(s) 271, 358, 697, 720
MaeI CTAG 2 cut(s) 609, 711
MaeIII GTNAC 1 cut(s) 767
MalI GATC 3 cut(s) 183, 498, 906
MbiI CCGCTC 1 cut(s) 16
MboI GATC 3 cut(s) 181, 496, 904
MboII GAAGA 4 cut(s) 58, 170, 410, 796
MflI RGATCY 1 cut(s) 904
MluCI AATT 4 cut(s) 233, 760, 831, 968
MlyI GAGTC 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 340
MroXI GAANNNNTTC 1 cut(s) 572
MseI TTAA 2 cut(s) 864, 971
MslI CAYNNNNRTG 3 cut(s) 225, 559, 728
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 284
NdeII GATC 3 cut(s) 181, 496, 904
NlaIII CATG 5 cut(s) 65, 564, 727, 818, 892
NmuCI GTSAC 1 cut(s) 767
NspI RCATGY 2 cut(s) 564, 892
PciI ACATGT 1 cut(s) 560
PdmI GAANNNNTTC 1 cut(s) 572
PfeI GAWTC 2 cut(s) 351, 635
PkrI GCNGC 4 cut(s) 144, 286, 687, 754
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PscI ACATGT 1 cut(s) 560
PsiI TTATAA 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PstI CTGCAG 1 cut(s) 754
PsuI RGATCY 1 cut(s) 904
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
RseI CAYNNNNRTG 3 cut(s) 225, 559, 728
SaqAI TTAA 2 cut(s) 864, 971
SatI GCNGC 4 cut(s) 143, 285, 686, 753
Sau3AI GATC 3 cut(s) 181, 496, 904
SchI GAGTC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 99
SfaNI GCATC 4 cut(s) 271, 358, 697, 720
SfcI CTRYAG 1 cut(s) 750
SmiMI CAYNNNNRTG 3 cut(s) 225, 559, 728
SmlI CTYRAG 1 cut(s) 666
SmoI CTYRAG 1 cut(s) 666
Sse9I AATT 4 cut(s) 233, 760, 831, 968
SsiI CCGC 3 cut(s) 16, 308, 685
SspMI CTAG 2 cut(s) 609, 711
StyD4I CCNGG 1 cut(s) 97
TaaI ACNGT 3 cut(s) 168, 358, 856
TaqI TCGA 1 cut(s) 823
TasI AATT 4 cut(s) 233, 760, 831, 968
TauI GCSGC 1 cut(s) 688
TfiI GAWTC 2 cut(s) 351, 635
Tru1I TTAA 2 cut(s) 864, 971
Tru9I TTAA 2 cut(s) 864, 971
TscAI CASTG 4 cut(s) 155, 318, 361, 378
TseFI GTSAC 1 cut(s) 767
TseI GCWGC 3 cut(s) 142, 284, 752
Tsp45I GTSAC 1 cut(s) 767
TspDTI ATGAA 7 cut(s) 78, 459, 495, 712, 789, 803, 902
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 4 cut(s) 155, 318, 361, 378
XagI CCTNNNNNAGG 1 cut(s) 825
XapI RAATTY 1 cut(s) 760
XceI RCATGY 2 cut(s) 564, 892
XmnI GAANNNNTTC 1 cut(s) 572
XspI CTAG 2 cut(s) 609, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.