Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

41054946 .. 41057478

Gene Structure 2533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1291100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCTGCGGCCGCTCTCAGAAACCCTAGCTCCAAGCGCATCCTCTCCTACTCGCCGCAATCCTACTTGTTCGGCCGAGGATTGATCGCCGCCGCCGGTTCTCCAATCGCCGACTCTGCTGTCGGAAATGACCGATCTTTTAGCCCTAGTCCTTGGTGGCGATCCATGGCCACCTTCACCGGCATAAAACCTCATGTGAATGTTGGATTTGATCATGGAAAAACGACGCTGACCGCCGCACTTACAAAGGGTTTTGCAACTGGTGCCACTGGCCCTGTTGAACAAGGGACCGTTAGTCCTAATAACATGAACCTTCGCCCATTATCTCCTCATCTTCCTGTTTATAAGCCACATCTCAATTCGACATTTTCAATTACCAATAGAATCTCAGGGGTTGTCCTAGCTACTGTAGTTCTTCTTTTTTATCTTCTTTATATGAAAATGGGTTTGATTTGCTTCACCTTTGAAAAATACTACCAACTCCTCTTTTATTCATCAAAGCTCATCCCCATCACCCTCGAGATTTCAGCTTTAGCCCTGGCCTATCATACGTTATATGGGGTTCGCAGCTTTGTTCGCAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0016020 GO:0032991 GO:0044424 GO:0044425 GO:0044464 GO:0045273 GO:0070469 GO:0098796 GO:0098803

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

HSP70 Sdh_cyt

Protein Analysis

196

Amino Acids

21.31

Weight (kDa)

10.04

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sdh_cyt	PF01127	106 - 192	2.9e-14	Succinate dehydrogenase/Fumarate reductase transmembrane subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AasI	GACNNNNNNGTC	1 cut(s)	119
AccB1I	GGYRCC	1 cut(s)	263
AccBSI	CCGCTC	1 cut(s)	14
AciI	CCGC	7 cut(s)	8, 12, 56, 90, 93, 234, 237
AclWI	GGATC	1 cut(s)	156
AcoI	YGGCCR	3 cut(s)	9, 73, 168
AgsI	TTSAA	3 cut(s)	281, 372, 467
AhdI	GACNNNNNGTC	1 cut(s)	294
AjnI	CCWGG	1 cut(s)	537
AluBI	AGCT	5 cut(s)	30, 404, 502, 530, 570
AluI	AGCT	5 cut(s)	30, 404, 502, 530, 570
AlwI	GGATC	1 cut(s)	156
Ama87I	CYCGRG	1 cut(s)	518
AoxI	GGCC	5 cut(s)	9, 73, 168, 271, 540
ApeKI	GCWGC	2 cut(s)	5, 567
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	2 cut(s)	272, 288
AsuHPI	GGTGA	3 cut(s)	169, 451, 505
AvaI	CYCGRG	1 cut(s)	518
AvaII	GGWCC	1 cut(s)	288
BalI	TGGCCA	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	579
BccI	CCATC	1 cut(s)	518
BciT130I	CCWGG	1 cut(s)	539
BclI	TGATCA	1 cut(s)	211
BfaI	CTAG	3 cut(s)	27, 147, 401
BfmI	CTRYAG	1 cut(s)	408
BisI	GCNGC	8 cut(s)	6, 9, 12, 56, 90, 93, 237, 568
BlsI	GCNGC	8 cut(s)	7, 10, 13, 57, 91, 94, 238, 569
Bme1390I	CCNGG	1 cut(s)	539
Bme18I	GGWCC	1 cut(s)	288
BmeRI	GACNNNNNGTC	1 cut(s)	294
BmeT110I	CYCGRG	1 cut(s)	518
BmgT120I	GGNCC	2 cut(s)	272, 288
BmiI	GGNNCC	2 cut(s)	265, 289
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	1 cut(s)	48
BsaJI	CCNNGG	4 cut(s)	76, 152, 165, 537
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bse118I	RCCGGY	2 cut(s)	95, 179
Bse1I	ACTGG	2 cut(s)	265, 274
BseBI	CCWGG	1 cut(s)	539
BseDI	CCNNGG	4 cut(s)	76, 152, 165, 537
BseGI	GGATG	2 cut(s)	39, 504
BseMII	CTCAG	2 cut(s)	31, 402
BseNI	ACTGG	2 cut(s)	265, 274
BseRI	GAGGAG	2 cut(s)	318, 473
BseX3I	CGGCCG	2 cut(s)	9, 73
BseXI	GCAGC	1 cut(s)	579
Bsh1285I	CGRYCG	2 cut(s)	12, 76
BshFI	GGCC	5 cut(s)	11, 75, 170, 273, 542
BshNI	GGYRCC	1 cut(s)	263
BsiEI	CGRYCG	2 cut(s)	12, 76
BsiHKCI	CYCGRG	1 cut(s)	518
BsiSI	CCGG	2 cut(s)	96, 180
BslFI	GGGAC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	5 cut(s)	11, 75, 170, 273, 542
BsoBI	CYCGRG	1 cut(s)	518
Bsp143I	GATC	4 cut(s)	84, 134, 161, 211
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	7 cut(s)	8, 12, 56, 90, 93, 234, 237
BspANI	GGCC	5 cut(s)	11, 75, 170, 273, 542
BspCNI	CTCAG	2 cut(s)	30, 401
BspLI	GGNNCC	2 cut(s)	265, 289
BspPI	GGATC	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	263
BsrBI	CCGCTC	1 cut(s)	14
BsrFI	RCCGGY	2 cut(s)	95, 179
BsrI	ACTGG	2 cut(s)	265, 274
BssAI	RCCGGY	2 cut(s)	95, 179
BssECI	CCNNGG	4 cut(s)	76, 152, 165, 537
BssMI	GATC	4 cut(s)	84, 134, 161, 211
BssT1I	CCWWGG	2 cut(s)	152, 165
Bst2UI	CCWGG	1 cut(s)	539
Bst4CI	ACNGT	2 cut(s)	292, 409
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	17, 388
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	39, 504
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	4 cut(s)	87, 137, 164, 214
BstMBI	GATC	4 cut(s)	84, 134, 161, 211
BstMCI	CGRYCG	2 cut(s)	12, 76
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 36, 116, 263, 576
BstNI	CCWGG	1 cut(s)	539
BstSCI	CCNGG	1 cut(s)	537
BstSFI	CTRYAG	1 cut(s)	408
BstV1I	GCAGC	1 cut(s)	579
BstZI	CGGCCG	2 cut(s)	9, 73
BsuRI	GGCC	5 cut(s)	11, 75, 170, 273, 542
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	39, 504
BtsIMutI	CAGTG	1 cut(s)	267
CciNI	GCGGCCGC	1 cut(s)	9
CfoI	GCGC	1 cut(s)	39
Cfr10I	RCCGGY	2 cut(s)	95, 179
Cfr13I	GGNCC	2 cut(s)	272, 288
CseI	GACGC	1 cut(s)	235
CviAII	CATG	4 cut(s)	166, 194, 215, 307
DdeI	CTNAG	2 cut(s)	17, 388
DpnI	GATC	4 cut(s)	86, 136, 163, 213
DpnII	GATC	4 cut(s)	84, 134, 161, 211
DrdI	GACNNNNNNGTC	1 cut(s)	119
DriI	GACNNNNNGTC	1 cut(s)	294
DseDI	GACNNNNNNGTC	1 cut(s)	119
EaeI	YGGCCR	3 cut(s)	9, 73, 168
EagI	CGGCCG	2 cut(s)	9, 73
Eam1105I	GACNNNNNGTC	1 cut(s)	294
EclXI	CGGCCG	2 cut(s)	9, 73
Eco130I	CCWWGG	2 cut(s)	152, 165
Eco47I	GGWCC	1 cut(s)	288
Eco52I	CGGCCG	2 cut(s)	9, 73
Eco88I	CYCGRG	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	537
EcoT14I	CCWWGG	2 cut(s)	152, 165
ErhI	CCWWGG	2 cut(s)	152, 165
FaeI	CATG	4 cut(s)	169, 197, 218, 310
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	4 cut(s)	165, 193, 214, 306
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	8 cut(s)	6, 9, 12, 56, 90, 93, 237, 568
FokI	GGATG	2 cut(s)	26, 491
Fsp4HI	GCNGC	8 cut(s)	6, 9, 12, 56, 90, 93, 237, 568
FspBI	CTAG	3 cut(s)	27, 147, 401
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	8 cut(s)	6, 9, 12, 56, 90, 93, 237, 568
HaeIII	GGCC	5 cut(s)	11, 75, 170, 273, 542
HapII	CCGG	2 cut(s)	96, 180
HgaI	GACGC	1 cut(s)	235
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	4 cut(s)	169, 197, 218, 310
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HinfI	GANTC	2 cut(s)	113, 384
HpaII	CCGG	2 cut(s)	96, 180
HphI	GGTGA	3 cut(s)	169, 451, 505
Hpy188I	TCNGA	2 cut(s)	20, 125
Hpy188III	TCNNGA	1 cut(s)	520
Hpy99I	CGWCG	1 cut(s)	229
HpyAV	CCTTC	2 cut(s)	184, 323
HpyCH4III	ACNGT	2 cut(s)	292, 409
HpyCH4IV	ACGT	1 cut(s)	551
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 36, 116, 263, 576
HpyF3I	CTNAG	2 cut(s)	17, 388
HpySE526I	ACGT	1 cut(s)	551
Hsp92II	CATG	4 cut(s)	169, 197, 218, 310
HspAI	GCGC	1 cut(s)	37
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	84, 134, 161, 211
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	9 cut(s)	109, 193, 246, 255, 288, 351, 375, 524, 551
Lsp1109I	GCAGC	1 cut(s)	579
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	3 cut(s)	27, 147, 401
MaeII	ACGT	1 cut(s)	551
MalI	GATC	4 cut(s)	86, 136, 163, 213
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	4 cut(s)	84, 134, 161, 211
MboII	GAAGA	3 cut(s)	326, 407, 419
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	3 cut(s)	358, 372, 581
MluNI	TGGCCA	1 cut(s)	170
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	2 cut(s)	103, 184
MnlI	CCTC	6 cut(s)	53, 71, 201, 339, 494, 527
Mox20I	TGGCCA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	170
MslI	CAYNNNNRTG	1 cut(s)	198
Msp20I	TGGCCA	1 cut(s)	170
MspI	CCGG	2 cut(s)	96, 180
MspR9I	CCNGG	1 cut(s)	539
MvaI	CCWGG	1 cut(s)	539
MwoI	GCNNNNNNNGC	5 cut(s)	11, 36, 116, 263, 576
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	4 cut(s)	84, 134, 161, 211
NlaIII	CATG	4 cut(s)	169, 197, 218, 310
NlaIV	GGNNCC	2 cut(s)	265, 289
NmeAIII	GCCGAG	1 cut(s)	101
NotI	GCGGCCGC	1 cut(s)	9
PaeR7I	CTCGAG	1 cut(s)	518
PfeI	GAWTC	1 cut(s)	384
PkrI	GCNGC	8 cut(s)	7, 10, 13, 57, 91, 94, 238, 569
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PsiI	TTATAA	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	537
PspGI	CCWGG	1 cut(s)	537
PspN4I	GGNNCC	2 cut(s)	265, 289
PspPI	GGNCC	2 cut(s)	272, 288
RseI	CAYNNNNRTG	1 cut(s)	198
SatI	GCNGC	8 cut(s)	6, 9, 12, 56, 90, 93, 237, 568
Sau3AI	GATC	4 cut(s)	84, 134, 161, 211
Sau96I	GGNCC	2 cut(s)	272, 288
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	539
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	1 cut(s)	408
Sfr274I	CTCGAG	1 cut(s)	518
SinI	GGWCC	1 cut(s)	288
SlaI	CTCGAG	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	3 cut(s)	358, 372, 581
SsiI	CCGC	7 cut(s)	8, 12, 56, 90, 93, 234, 237
SspMI	CTAG	3 cut(s)	27, 147, 401
StyD4I	CCNGG	1 cut(s)	537
StyI	CCWWGG	2 cut(s)	152, 165
TaaI	ACNGT	2 cut(s)	292, 409
TaiI	ACGT	1 cut(s)	554
TaqI	TCGA	2 cut(s)	362, 519
TaqII	GACCGA	1 cut(s)	147
TasI	AATT	3 cut(s)	358, 372, 581
TauI	GCSGC	6 cut(s)	11, 14, 58, 92, 95, 239
TfiI	GAWTC	1 cut(s)	384
TscAI	CASTG	1 cut(s)	274
TseI	GCWGC	2 cut(s)	5, 567
TspDTI	ATGAA	3 cut(s)	323, 452, 483
TspRI	CASTG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	288
XhoI	CTCGAG	1 cut(s)	518
XspI	CTAG	3 cut(s)	27, 147, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.