MD12G1019400.v1.1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
N/A
Physical Location & Seq
Reverse (-)
1910618 .. 1918046
7429 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1019400.v1.1.491

Sequence Viewer

Length: 342 bp
ATGTCTTGCTCTTCTAAGAAAGAGCTGGAGGAGCAGCTCAAGGAGGCTGGAAATATTCTCCTCAACCCTCCTTTTGCTACCAAGGAGCTTCTCAAATTCCTTGGTGTTTCTGTGTGTGTATTTGGTTTTCTTTGTGCAACGGTGGAGAAGCCATATCCCTATCTATCCAAAAATTACACCTCTGAGGACAGACTACTTGAGCAGTGTGAAAAGATAAATCAGCAGCTAAGATCTCTATTTACTGTGTTGATTCAGAATGCTCCCAATGTAGAGAATCTGCAAGACCAGCATAACGGGCATTGCACCAAGCGGAGTTGCTCAAGAAGGATGACCCGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006355 GO:0006357 GO:0006810 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009628 GO:0009629 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009888 GO:0009889 GO:0009893 GO:0009914 GO:0009926 GO:0009987 GO:0010016 GO:0010033 GO:0010052 GO:0010103 GO:0010235 GO:0010374 GO:0010376 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010564 GO:0010604 GO:0010638 GO:0010817 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0022622 GO:0030104 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032506 GO:0032875 GO:0033043 GO:0033044 GO:0033993 GO:0034293 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043934 GO:0044212 GO:0044424 GO:0044464 GO:0044703 GO:0047484 GO:0048229 GO:0048236 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048871 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051301 GO:0051321 GO:0051704 GO:0051726 GO:0060255 GO:0060918 GO:0061085 GO:0061087 GO:0061640 GO:0065007 GO:0065008 GO:0080022 GO:0080090 GO:0080134 GO:0090329 GO:0090436 GO:0090558 GO:0090626 GO:0090627 GO:0090696 GO:0090698 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1901000 GO:1901002 GO:1901333 GO:1901363 GO:1901700 GO:1901987 GO:1902275 GO:1902410 GO:1902584 GO:1902806 GO:1903046 GO:1903047 GO:1903506 GO:1905269 GO:2000023 GO:2000026 GO:2000037 GO:2000069 GO:2000070 GO:2000112 GO:2000280 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

13.0

Weight (kDa)

8.8

Isoelectric Point (pI)

69.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 310
AcsI RAATTY 1 cut(s) 95
AluBI AGCT 4 cut(s) 25, 37, 88, 226
AluI AGCT 4 cut(s) 25, 37, 88, 226
ApeKI GCWGC 2 cut(s) 34, 223
ApoI RAATTY 1 cut(s) 95
BbvI GCAGC 2 cut(s) 46, 235
BglII AGATCT 1 cut(s) 230
BisI GCNGC 2 cut(s) 35, 224
BlsI GCNGC 2 cut(s) 36, 225
BpmI CTGGAG 1 cut(s) 47
BpuEI CTTGAG 3 cut(s) 23, 218, 304
BsaJI CCNNGG 2 cut(s) 81, 100
Bse3DI GCAATG 1 cut(s) 298
BseDI CCNNGG 2 cut(s) 81, 100
BseGI GGATG 1 cut(s) 333
BseMI GCAATG 1 cut(s) 298
BseMII CTCAG 1 cut(s) 174
BseRI GAGGAG 2 cut(s) 44, 50
BseXI GCAGC 2 cut(s) 46, 235
BsmI GAATGC 1 cut(s) 262
Bsp143I GATC 1 cut(s) 230
BspACI CCGC 1 cut(s) 310
BspCNI CTCAG 1 cut(s) 175
BspQI GCTCTTC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 81, 100
BssMI GATC 1 cut(s) 230
BssT1I CCWWGG 2 cut(s) 81, 100
Bst4CI ACNGT 2 cut(s) 142, 244
Bst6I CTCTTC 1 cut(s) 16
BstDEI CTNAG 3 cut(s) 15, 183, 227
BstF5I GGATG 1 cut(s) 333
BstKTI GATC 1 cut(s) 233
BstMBI GATC 1 cut(s) 230
BstMWI GCNNNNNNNGC 3 cut(s) 31, 286, 295
BstV1I GCAGC 2 cut(s) 46, 235
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
BtsCI GGATG 1 cut(s) 333
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 1 cut(s) 209
CviJI RGCY 6 cut(s) 25, 37, 47, 88, 151, 226
CviKI_1 RGCY 6 cut(s) 25, 37, 47, 88, 151, 226
DdeI CTNAG 3 cut(s) 15, 183, 227
DpnI GATC 1 cut(s) 232
DpnII GATC 1 cut(s) 230
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco130I CCWWGG 2 cut(s) 81, 100
EcoT14I CCWWGG 2 cut(s) 81, 100
ErhI CCWWGG 2 cut(s) 81, 100
FaiI YATR 2 cut(s) 154, 291
Fnu4HI GCNGC 2 cut(s) 35, 224
Fsp4HI GCNGC 2 cut(s) 35, 224
GluI GCNGC 2 cut(s) 35, 224
GsuI CTGGAG 1 cut(s) 47
HinfI GANTC 2 cut(s) 250, 274
Hpy188I TCNGA 2 cut(s) 184, 255
Hpy188III TCNNGA 1 cut(s) 321
HpyAV CCTTC 1 cut(s) 318
HpyCH4III ACNGT 2 cut(s) 142, 244
HpyCH4V TGCA 3 cut(s) 137, 280, 303
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 286, 295
HpyF3I CTNAG 3 cut(s) 15, 183, 227
Kzo9I GATC 1 cut(s) 230
LguI GCTCTTC 1 cut(s) 16
LmnI GCTCC 3 cut(s) 31, 85, 265
LpnPI CCDG 3 cut(s) 11, 33, 299
Lsp1109I GCAGC 2 cut(s) 46, 235
MalI GATC 1 cut(s) 232
MboI GATC 1 cut(s) 230
MboII GAAGA 1 cut(s) 3
MflI RGATCY 1 cut(s) 230
MluCI AATT 2 cut(s) 95, 172
MnlI CCTC 6 cut(s) 22, 37, 71, 78, 178, 190
Mva1269I GAATGC 1 cut(s) 262
MwoI GCNNNNNNNGC 3 cut(s) 31, 286, 295
NdeII GATC 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 16
PctI GAATGC 1 cut(s) 262
PfeI GAWTC 2 cut(s) 250, 274
PkrI GCNGC 2 cut(s) 36, 225
PsuI RGATCY 1 cut(s) 230
SapI GCTCTTC 1 cut(s) 16
SatI GCNGC 2 cut(s) 35, 224
Sau3AI GATC 1 cut(s) 230
SetI ASST 5 cut(s) 27, 39, 90, 182, 228
SmlI CTYRAG 3 cut(s) 38, 197, 319
SmoI CTYRAG 3 cut(s) 38, 197, 319
Sse9I AATT 2 cut(s) 95, 172
SsiI CCGC 1 cut(s) 310
SspI AATATT 1 cut(s) 55
StyI CCWWGG 2 cut(s) 81, 100
TaaI ACNGT 2 cut(s) 142, 244
TasI AATT 2 cut(s) 95, 172
TfiI GAWTC 2 cut(s) 250, 274
TscAI CASTG 1 cut(s) 209
TseI GCWGC 2 cut(s) 34, 223
TspRI CASTG 1 cut(s) 209
XapI RAATTY 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.