MD12G1097200.v1.1
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
N/A
Physical Location & Seq
Forward (+)
15273544 .. 15275979
2436 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1097200.v1.1.491

Sequence Viewer

Length: 312 bp
ATGAGTAGGCAGCGGGCCATCAGGCATCTTGAAAAAGGCAGGGTTGCAATTTTTGCTGGAATTGGTGCTGGCACTGAAAATCATCTCTTTTCCACTGACACGCACTTCAAGCTTTGGAGATTCTCAGTTAATGCAGAGGCAGCACTCAAGGGTACCAATGCAGATGGTGTCTATGACTGCAACTCTCAAGACAATAATTTTACATTTGATCACATCTCTATGAGGGAGTTGGTCACAAGAGGCGCCACCTCCATGGACATGATGGCACTGACTTTCTGCGAAGAAAACAGGATTCCGGTTGTGGTCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_kinase Myb_DNA-bind_4

Protein Analysis

104

Amino Acids

11.55

Weight (kDa)

6.4

Isoelectric Point (pI)

25.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_kinase PF00696 4 - 102 7.2e-10 Amino acid kinase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 310
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 2 cut(s) 152, 242
AciI CCGC 1 cut(s) 13
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 1 cut(s) 154
AgsI TTSAA 2 cut(s) 32, 109
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AoxI GGCC 1 cut(s) 15
ApeKI GCWGC 2 cut(s) 10, 140
Asp718I GGTACC 1 cut(s) 152
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 15
BanI GGYRCC 2 cut(s) 152, 242
BbvI GCAGC 2 cut(s) 22, 152
BccI CCATC 3 cut(s) 26, 158, 256
BclI TGATCA 1 cut(s) 208
BfoI RGCGCY 1 cut(s) 246
BisI GCNGC 2 cut(s) 11, 141
BlsI GCNGC 2 cut(s) 12, 142
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 2 cut(s) 154, 244
BmsI GCATC 1 cut(s) 34
BpuEI CTTGAG 2 cut(s) 131, 171
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 252
BseMII CTCAG 1 cut(s) 138
BseXI GCAGC 2 cut(s) 22, 152
BshFI GGCC 1 cut(s) 17
BshNI GGYRCC 2 cut(s) 152, 242
BsiSI CCGG 1 cut(s) 296
BsnI GGCC 1 cut(s) 17
Bsp143I GATC 1 cut(s) 208
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 1 cut(s) 13
BspANI GGCC 1 cut(s) 17
BspCNI CTCAG 1 cut(s) 137
BspLI GGNNCC 2 cut(s) 154, 244
BspT107I GGYRCC 2 cut(s) 152, 242
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 1 cut(s) 208
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 252
BstACI GRCGYC 1 cut(s) 243
BstAPI GCANNNNNTGC 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 15, 70
BstDEI CTNAG 1 cut(s) 124
BstDSI CCRYGG 1 cut(s) 252
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstMWI GCNNNNNNNGC 3 cut(s) 53, 109, 140
BstV1I GCAGC 2 cut(s) 22, 152
BstXI CCANNNNNNTGG 1 cut(s) 253
BsuRI GGCC 1 cut(s) 17
BtgI CCRYGG 1 cut(s) 252
BtsIMutI CAGTG 3 cut(s) 72, 93, 266
Cac8I GCNNGC 2 cut(s) 15, 70
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 15
Csp6I GTAC 1 cut(s) 153
CviAII CATG 2 cut(s) 253, 259
CviJI RGCY 2 cut(s) 17, 112
CviKI_1 RGCY 2 cut(s) 17, 112
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 1 cut(s) 124
DinI GGCGCC 1 cut(s) 244
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 252
EgeI GGCGCC 1 cut(s) 244
EheI GGCGCC 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 2 cut(s) 256, 262
FaiI YATR 5 cut(s) 174, 221, 254, 260, 310
FatI CATG 2 cut(s) 252, 258
FauI CCCGC 1 cut(s) 6
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 2 cut(s) 11, 141
Fsp4HI GCNGC 2 cut(s) 11, 141
GlaI GCGC 1 cut(s) 244
GluI GCNGC 2 cut(s) 11, 141
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 1 cut(s) 17
HapII CCGG 1 cut(s) 296
HhaI GCGC 1 cut(s) 245
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 2 cut(s) 256, 262
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 2 cut(s) 120, 292
HpaII CCGG 1 cut(s) 296
Hpy188III TCNNGA 2 cut(s) 29, 188
HpyCH4V TGCA 4 cut(s) 47, 134, 161, 180
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 109, 140
HpyF3I CTNAG 1 cut(s) 124
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 2 cut(s) 256, 262
HspAI GCGC 1 cut(s) 243
KasI GGCGCC 1 cut(s) 242
KpnI GGTACC 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 1 cut(s) 208
LpnPI CCDG 5 cut(s) 7, 25, 42, 54, 274
Lsp1109I GCAGC 2 cut(s) 22, 152
LweI GCATC 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 232
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 1 cut(s) 293
MluCI AATT 3 cut(s) 48, 60, 196
Mly113I GGCGCC 1 cut(s) 243
MnlI CCTC 4 cut(s) 130, 216, 233, 259
MseI TTAA 1 cut(s) 129
MslI CAYNNNNRTG 3 cut(s) 218, 251, 257
MspA1I CMGCKG 1 cut(s) 13
MspI CCGG 1 cut(s) 296
MwoI GCNNNNNNNGC 3 cut(s) 53, 109, 140
NarI GGCGCC 1 cut(s) 243
NcoI CCATGG 1 cut(s) 252
NdeII GATC 1 cut(s) 208
NlaIII CATG 2 cut(s) 256, 262
NlaIV GGNNCC 2 cut(s) 154, 244
NmuCI GTSAC 1 cut(s) 232
PfeI GAWTC 2 cut(s) 120, 292
PkrI GCNGC 2 cut(s) 12, 142
PluTI GGCGCC 1 cut(s) 246
PsiI TTATAA 1 cut(s) 310
PspN4I GGNNCC 2 cut(s) 154, 244
PspPI GGNCC 1 cut(s) 15
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
RseI CAYNNNNRTG 3 cut(s) 218, 251, 257
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 2 cut(s) 11, 141
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 1 cut(s) 15
SetI ASST 2 cut(s) 114, 251
SfaNI GCATC 1 cut(s) 34
SfoI GGCGCC 1 cut(s) 244
SmiMI CAYNNNNRTG 3 cut(s) 218, 251, 257
SmlI CTYRAG 2 cut(s) 146, 186
SmoI CTYRAG 2 cut(s) 146, 186
Sse9I AATT 3 cut(s) 48, 60, 196
SsiI CCGC 1 cut(s) 13
SspDI GGCGCC 1 cut(s) 242
StyI CCWWGG 1 cut(s) 252
TasI AATT 3 cut(s) 48, 60, 196
TfiI GAWTC 2 cut(s) 120, 292
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 3 cut(s) 79, 100, 273
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 2 cut(s) 10, 140
Tsp45I GTSAC 1 cut(s) 232
TspRI CASTG 3 cut(s) 79, 100, 273
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.