MD12G1183300.v1.1
NAC Family

NAC domain-containing protein 86-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
N/A
Physical Location & Seq
Forward (+)
26342175 .. 26349644
7470 bp
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UTR
Exon/CDS
Intron
MD12G1183300.v1.1.491

Sequence Viewer

Length: 141 bp
ATGGATGAAGAGTTTGTTGCTTACTATCTAGATCGAAAAATCAATGGTCGCACCATTGAGCTAGAAATTATCCCAGAGGTCGACCTCTACAAATGTGAGCCGCGGGATTTTCCTAAGAAAGCAACACGAAGATGGACTTAG

Protein Analysis

47

Amino Acids

5.65

Weight (kDa)

5.28

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 2 - 41 1.5e-09 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 81
AccII CGCG 1 cut(s) 103
AciI CCGC 2 cut(s) 101, 103
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
BccI CCATC 1 cut(s) 126
BfaI CTAG 2 cut(s) 29, 62
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 101
BseGI GGATG 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 103
Bsp143I GATC 1 cut(s) 31
BspACI CCGC 2 cut(s) 101, 103
BspFNI CGCG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 3
BstDEI CTNAG 2 cut(s) 114, 138
BstDSI CCRYGG 1 cut(s) 101
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 103
BstKTI GATC 1 cut(s) 34
BstMBI GATC 1 cut(s) 31
BstUI CGCG 1 cut(s) 103
BtgI CCRYGG 1 cut(s) 101
BtsCI GGATG 1 cut(s) 10
Cfr42I CCGCGG 1 cut(s) 104
CviJI RGCY 2 cut(s) 61, 100
CviKI_1 RGCY 2 cut(s) 61, 100
DdeI CTNAG 2 cut(s) 114, 138
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
FalI AAGNNNNNCTT 1 cut(s) 121
FauI CCCGC 1 cut(s) 96
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 101
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 101
FspBI CTAG 2 cut(s) 29, 62
GluI GCNGC 1 cut(s) 101
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 1 cut(s) 82
HpyF3I CTNAG 2 cut(s) 114, 138
KspI CCGCGG 1 cut(s) 104
Kzo9I GATC 1 cut(s) 31
LpnPI CCDG 1 cut(s) 87
MaeI CTAG 2 cut(s) 29, 62
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 2 cut(s) 20, 141
MluCI AATT 1 cut(s) 66
MnlI CCTC 2 cut(s) 70, 95
MslI CAYNNNNRTG 1 cut(s) 130
MspA1I CMGCKG 1 cut(s) 103
MvnI CGCG 1 cut(s) 103
NdeII GATC 1 cut(s) 31
PkrI GCNGC 1 cut(s) 102
RseI CAYNNNNRTG 1 cut(s) 130
SacII CCGCGG 1 cut(s) 104
SalI GTCGAC 1 cut(s) 80
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 1 cut(s) 31
SetI ASST 3 cut(s) 63, 81, 87
Sfr303I CCGCGG 1 cut(s) 104
SgeI CNNG 5 cut(s) 41, 74, 86, 114, 116
SgrBI CCGCGG 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 130
Sse9I AATT 1 cut(s) 66
SsiI CCGC 2 cut(s) 101, 103
SspMI CTAG 2 cut(s) 29, 62
TaqI TCGA 2 cut(s) 34, 81
TasI AATT 1 cut(s) 66
TauI GCSGC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 21
XbaI TCTAGA 1 cut(s) 28
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 2 cut(s) 29, 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.