Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

31680697 .. 31684345

Gene Structure 3649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1246500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGTTAAAGTAGAACTTTTTAGCCTACTAGAGCACGATAATGCCAAGTATCTGCTTACTGAGAAAGTAGACAAACGGAAAAAGGATGGTCCCAAGCGCAGTGCCAATGGACCTAGTACTTCTGTCCCTGTGATAGGAGATTTTGATGAAGACGAACTGAAAAATACTAGCATGTCTAATGACTATATAGTTCCATGTTTTTACGATCCCCGTGTTATATGCTGGCTCATTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009870 GO:0009889 GO:0009987 GO:0010204 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032502 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Myb_Cef Myb_DNA-binding

Protein Analysis

79

Amino Acids

8.96

Weight (kDa)

5.57

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	69
AclWI	GGATC	1 cut(s)	200
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	1 cut(s)	134
Alw21I	GWGCWC	1 cut(s)	36
AlwI	GGATC	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	2 cut(s)	89, 110
AvaII	GGWCC	2 cut(s)	89, 110
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	36
BccI	CCATC	1 cut(s)	80
BfaI	CTAG	3 cut(s)	29, 114, 168
BmcAI	AGTACT	1 cut(s)	118
Bme18I	GGWCC	2 cut(s)	89, 110
BmgT120I	GGNCC	2 cut(s)	89, 110
BmiI	GGNNCC	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	36
BslFI	GGGAC	2 cut(s)	75, 110
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmFI	GGGAC	2 cut(s)	75, 110
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	205
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	91
BspPI	GGATC	1 cut(s)	200
BssMI	GATC	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	224
BstDEI	CTNAG	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstNSI	RCATGY	1 cut(s)	175
BstV2I	GAAGAC	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	224
CfoI	GCGC	1 cut(s)	99
Cfr13I	GGNCC	2 cut(s)	89, 110
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	2 cut(s)	172, 195
CviJI	RGCY	2 cut(s)	24, 226
CviKI_1	RGCY	2 cut(s)	24, 226
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
Eco47I	GGWCC	2 cut(s)	89, 110
EcoNI	CCTNNNNNAGG	1 cut(s)	132
FaeI	CATG	2 cut(s)	175, 198
FaiI	YATR	6 cut(s)	173, 186, 188, 196, 218, 220
FalI	AAGNNNNNCTT	1 cut(s)	32
FaqI	GGGAC	2 cut(s)	75, 110
FatI	CATG	2 cut(s)	171, 194
FblI	GTMKAC	1 cut(s)	69
FokI	GGATG	1 cut(s)	98
FspBI	CTAG	3 cut(s)	29, 114, 168
GlaI	GCGC	1 cut(s)	98
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	2 cut(s)	175, 198
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	70
Hpy8I	GTNNAC	1 cut(s)	70
HpyF3I	CTNAG	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	175, 198
HspAI	GCGC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	205
LpnPI	CCDG	2 cut(s)	141, 208
MaeI	CTAG	3 cut(s)	29, 114, 168
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	1 cut(s)	161
MhlI	GDGCHC	1 cut(s)	36
MseI	TTAA	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	39
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	2 cut(s)	175, 198
NlaIV	GGNNCC	1 cut(s)	91
NspI	RCATGY	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	2 cut(s)	89, 110
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
RseI	CAYNNNNRTG	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	2 cut(s)	89, 110
ScaI	AGTACT	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	1 cut(s)	115
SinI	GGWCC	2 cut(s)	89, 110
SmiMI	CAYNNNNRTG	1 cut(s)	39
SspMI	CTAG	3 cut(s)	29, 114, 168
TatI	WGTACW	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	1 cut(s)	106
TspDTI	ATGAA	2 cut(s)	162, 221
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	106
VpaK11BI	GGWCC	2 cut(s)	89, 110
XagI	CCTNNNNNAGG	1 cut(s)	132
XceI	RCATGY	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	69
XspI	CTAG	3 cut(s)	29, 114, 168
ZrmI	AGTACT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.