Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10053775 .. 10054116

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1132400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCTTCCTCAGTAGTCATCTCCCAACCACGCTCCAAGATCGAGTCTTATGTCGATAACAAGTGCAAGGAGGGCATTCGCCAGGTGAACATCACCGCCTCTCGCGCAATCACCGATGTCGCCCGAACCAACCTGGGACCCAAGGGTATGGATAAGATGATCTTCACCACCAACAGTGAGGTTATCATCACCAACAATGGCACCACGATTCTTAACAAGATGAAGGTCCTCCAACCGGTCGCCAAGATGCTTGTCGAGCTTTCTAAGTCCCAGGACGCAGCCGCTGGCGACGGCACCACTACTGTCGTCGTCATTGCCGGTGCTCTCCTGAAACAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0032991 GO:0042221 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

114

Amino Acids

12.04

Weight (kDa)

9.47

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	37 - 113	1.4e-30	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	200, 293
AccII	CGCG	1 cut(s)	105
AciI	CCGC	2 cut(s)	96, 282
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgeI	ACCGGT	1 cut(s)	235
AjnI	CCWGG	3 cut(s)	81, 132, 270
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Alw21I	GWGCWC	1 cut(s)	325
AlwNI	CAGNNNCTG	1 cut(s)	284
ApeKI	GCWGC	1 cut(s)	278
AsiGI	ACCGGT	1 cut(s)	235
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	2 cut(s)	137, 226
AsuHPI	GGTGA	5 cut(s)	85, 97, 103, 157, 181
AvaII	GGWCC	2 cut(s)	137, 226
BanI	GGYRCC	2 cut(s)	200, 293
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	290
BceAI	ACGGC	1 cut(s)	307
BciT130I	CCWGG	3 cut(s)	83, 134, 272
BisI	GCNGC	2 cut(s)	279, 282
BlsI	GCNGC	2 cut(s)	280, 283
Bme1390I	CCNGG	3 cut(s)	83, 134, 272
Bme18I	GGWCC	2 cut(s)	137, 226
BmgT120I	GGNCC	2 cut(s)	137, 226
BmiI	GGNNCC	4 cut(s)	138, 139, 202, 295
BmrFI	CCNGG	3 cut(s)	83, 134, 272
BmsI	GCATC	1 cut(s)	237
BsaJI	CCNNGG	3 cut(s)	133, 141, 270
BsaWI	WCCGGW	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse118I	RCCGGY	2 cut(s)	235, 317
Bse3DI	GCAATG	1 cut(s)	312
BseBI	CCWGG	3 cut(s)	83, 134, 272
BseDI	CCNNGG	3 cut(s)	133, 141, 270
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	290
Bsh1236I	CGCG	1 cut(s)	105
Bsh1285I	CGRYCG	1 cut(s)	240
BshNI	GGYRCC	2 cut(s)	200, 293
BshTI	ACCGGT	1 cut(s)	235
BsiEI	CGRYCG	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	236, 318
BslFI	GGGAC	2 cut(s)	150, 253
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmFI	GGGAC	2 cut(s)	150, 253
BsmI	GAATGC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	2 cut(s)	39, 159
BspACI	CCGC	2 cut(s)	96, 282
BspCNI	CTCAG	1 cut(s)	23
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	4 cut(s)	138, 139, 202, 295
BspT107I	GGYRCC	2 cut(s)	200, 293
BsrDI	GCAATG	1 cut(s)	312
BsrFI	RCCGGY	2 cut(s)	235, 317
BssAI	RCCGGY	2 cut(s)	235, 317
BssECI	CCNNGG	3 cut(s)	133, 141, 270
BssMI	GATC	2 cut(s)	39, 159
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	3 cut(s)	83, 134, 272
Bst4CI	ACNGT	2 cut(s)	176, 304
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	2 cut(s)	10, 264
BstFNI	CGCG	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	2 cut(s)	42, 162
BstMBI	GATC	2 cut(s)	39, 159
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 104, 256
BstNI	CCWGG	3 cut(s)	83, 134, 272
BstSCI	CCNGG	3 cut(s)	81, 132, 270
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	290
BstXI	CCANNNNNNTGG	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	286
CaiI	CAGNNNCTG	1 cut(s)	284
CfoI	GCGC	1 cut(s)	107
Cfr10I	RCCGGY	2 cut(s)	235, 317
Cfr13I	GGNCC	2 cut(s)	137, 226
CseI	GACGC	1 cut(s)	284
CspAI	ACCGGT	1 cut(s)	235
CviJI	RGCY	3 cut(s)	5, 259, 281
CviKI_1	RGCY	3 cut(s)	5, 259, 281
DdeI	CTNAG	2 cut(s)	10, 264
DpnI	GATC	2 cut(s)	41, 161
DpnII	GATC	2 cut(s)	39, 159
Eco130I	CCWWGG	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	137, 226
EcoO109I	RGGNCCY	2 cut(s)	137, 226
EcoRII	CCWGG	3 cut(s)	81, 132, 270
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaiI	YATR	2 cut(s)	51, 149
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	2 cut(s)	150, 253
Fnu4HI	GCNGC	2 cut(s)	279, 282
Fsp4HI	GCNGC	2 cut(s)	279, 282
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	2 cut(s)	279, 282
HapII	CCGG	2 cut(s)	236, 318
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HinfI	GANTC	2 cut(s)	44, 208
HpaII	CCGG	2 cut(s)	236, 318
HphI	GGTGA	5 cut(s)	85, 97, 103, 157, 181
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	328
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	2 cut(s)	293, 311
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	2 cut(s)	176, 304
HpyCH4V	TGCA	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 104, 256
HpyF3I	CTNAG	2 cut(s)	10, 264
HspAI	GCGC	1 cut(s)	105
KflI	GGGWCCC	1 cut(s)	137
Kzo9I	GATC	2 cut(s)	39, 159
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	9 cut(s)	68, 95, 119, 146, 249, 257, 270, 284, 331
Lsp1109I	GCAGC	1 cut(s)	290
LweI	GCATC	1 cut(s)	237
MalI	GATC	2 cut(s)	41, 161
MboI	GATC	2 cut(s)	39, 159
MboII	GAAGA	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	325
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	5 cut(s)	19, 64, 109, 172, 239
MseI	TTAA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	2 cut(s)	236, 318
MspR9I	CCNGG	3 cut(s)	83, 134, 272
Mva1269I	GAATGC	1 cut(s)	75
MvaI	CCWGG	3 cut(s)	83, 134, 272
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	3 cut(s)	72, 104, 256
NdeII	GATC	2 cut(s)	39, 159
NlaIV	GGNNCC	4 cut(s)	138, 139, 202, 295
PctI	GAATGC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	208
PinAI	ACCGGT	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	280, 283
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PpuMI	RGGWCCY	2 cut(s)	137, 226
Psp5II	RGGWCCY	2 cut(s)	137, 226
Psp6I	CCWGG	3 cut(s)	81, 132, 270
PspGI	CCWGG	3 cut(s)	81, 132, 270
PspN4I	GGNNCC	4 cut(s)	138, 139, 202, 295
PspPI	GGNCC	2 cut(s)	137, 226
PspPPI	RGGWCCY	2 cut(s)	137, 226
PstNI	CAGNNNCTG	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	279, 282
Sau3AI	GATC	2 cut(s)	39, 159
Sau96I	GGNCC	2 cut(s)	137, 226
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	3 cut(s)	83, 134, 272
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	5 cut(s)	87, 135, 183, 228, 261
SfaNI	GCATC	1 cut(s)	237
SinI	GGWCC	2 cut(s)	137, 226
SsiI	CCGC	2 cut(s)	96, 282
StyD4I	CCNGG	3 cut(s)	81, 132, 270
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	176, 304
TaqI	TCGA	3 cut(s)	42, 54, 255
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	236
TspRI	CASTG	1 cut(s)	181
VpaK11BI	GGWCC	2 cut(s)	137, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.